mRNA_H-canaliculatus_M_contigs76602.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs76602.1.1
Unique NamemRNA_H-canaliculatus_M_contigs76602.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs76602.1.1 vs.
Match: DUF115 (domain-containing protein n=1 Tax=Granulosicoccus sp. TaxID=1943584 RepID=A0A848U359_9GAMM)

HSP 1 Score: 62.8 bits (151), Expect = 1.050e-9
Identity = 30/70 (42.86%), Postives = 46/70 (65.71%), Query Frame = 1 
Query:    1 LIEECLVRMTQCCIAGEDYESALESLGMLCEMLPSYVVSYAKMLNLCGQRDFAIELLESYIELYPSNKKA 210
            L+EE L  +T+  +  +D ESA+ +LG LCE+ P Y+ SYA +L + GQ D A+ELL  Y++ Y  + +A
Sbjct:  722 LVEETLTNLTRLYLDRQDGESAINTLGTLCEISPQYIPSYANLLTMLGQHDAALELLTVYLDNYTHDWRA 791
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BLAST of mRNA_H-canaliculatus_M_contigs76602.1.1 vs.
Match: MAF_flag10 (domain-containing protein n=1 Tax=Granulosicoccus antarcticus IMCC3135 TaxID=1192854 RepID=A0A2Z2NYB7_9GAMM)

HSP 1 Score: 60.5 bits (145), Expect = 6.820e-9
Identity = 30/70 (42.86%), Postives = 45/70 (64.29%), Query Frame = 1 
Query:    1 LIEECLVRMTQCCIAGEDYESALESLGMLCEMLPSYVVSYAKMLNLCGQRDFAIELLESYIELYPSNKKA 210
            LIEE L  +T+  +  +D +SA  +LG LCE+ P Y+ SYA +LNL G  + A+ELLE Y+  +  + +A
Sbjct:  722 LIEESLTNLTRIYLDQQDGDSAASTLGTLCEITPQYIPSYANLLNLLGNYESAVELLEIYLANFKHDYRA 791
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs76602.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
DUF1151.050e-942.86domain-containing protein n=1 Tax=Granulosicoccus ... [more]
MAF_flag106.820e-942.86domain-containing protein n=1 Tax=Granulosicoccus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs76602contigH-canaliculatus_M_contigs76602:4..234 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start1
Model size231
Hectar predicted targeting categoryother localisation
Exons1
Cds size207
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854104.4587617-UTR-H-canaliculatus_M_contigs76602:3..271696854104.4587617-UTR-H-canaliculatus_M_contigs76602:3..27Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs76602 4..27 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854104.4705973-CDS-H-canaliculatus_M_contigs76602:27..2341696854104.4705973-CDS-H-canaliculatus_M_contigs76602:27..234Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs76602 28..234 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs76602.1.1prot_H-canaliculatus_M_contigs76602.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs76602 28..234 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs76602.1.1

>prot_H-canaliculatus_M_contigs76602.1.1 ID=prot_H-canaliculatus_M_contigs76602.1.1|Name=mRNA_H-canaliculatus_M_contigs76602.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=69bp
MTQCCIAGEDYESALESLGMLCEMLPSYVVSYAKMLNLCGQRDFAIELLE
SYIELYPSNKKARFVLEGL
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mRNA from alignment at H-canaliculatus_M_contigs76602:4..234+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs76602.1.1 ID=mRNA_H-canaliculatus_M_contigs76602.1.1|Name=mRNA_H-canaliculatus_M_contigs76602.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=231bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76602:4..234+ (Hapterophycus canaliculatus Oshoro7m male)
TTGATTGAAGAATGTCTTGTCCGAATGACGCAGTGTTGTATCGCTGGCGA
AGACTATGAATCAGCCCTGGAATCACTAGGCATGCTTTGCGAGATGCTAC
CGTCATATGTCGTCAGTTACGCAAAGATGCTCAATCTTTGCGGCCAACGC
GACTTCGCCATAGAACTGTTGGAGTCATATATTGAGCTTTATCCGTCAAA
CAAAAAAGCTCGATTTGTACTGGAGGGCTTA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs76602:4..234+

>mRNA_H-canaliculatus_M_contigs76602.1.1 ID=mRNA_H-canaliculatus_M_contigs76602.1.1|Name=mRNA_H-canaliculatus_M_contigs76602.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=207bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76602:4..234+ (Hapterophycus canaliculatus Oshoro7m male)
ATGACGCAGTGTTGTATCGCTGGCGAAGACTATGAATCAGCCCTGGAATC
ACTAGGCATGCTTTGCGAGATGCTACCGTCATATGTCGTCAGTTACGCAA
AGATGCTCAATCTTTGCGGCCAACGCGACTTCGCCATAGAACTGTTGGAG
TCATATATTGAGCTTTATCCGTCAAACAAAAAAGCTCGATTTGTACTGGA
GGGCTTA
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