mRNA_H-canaliculatus_M_contigs76534.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs76534.1.1
Unique NamemRNA_H-canaliculatus_M_contigs76534.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs76534.1.1 vs.
Match: ABC1 (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNM7_ECTSI)

HSP 1 Score: 73.6 bits (179), Expect = 1.970e-14
Identity = 36/37 (97.30%), Postives = 36/37 (97.30%), Query Frame = 1 
Query:    4 SERVAFAQLIDRVFLLARSFNFVVPPYFISNVRALGE 114
            SERVAFAQLIDRVFLLARSFNF VPPYFISNVRALGE
Sbjct:  112 SERVAFAQLIDRVFLLARSFNFRVPPYFISNVRALGE 148
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BLAST of mRNA_H-canaliculatus_M_contigs76534.1.1 vs.
Match: Integrase (catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Y4_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 4.060e-14
Identity = 36/37 (97.30%), Postives = 36/37 (97.30%), Query Frame = 1 
Query:    4 SERVAFAQLIDRVFLLARSFNFVVPPYFISNVRALGE 114
            SERVAFAQLIDRVFLLARSFNF VPPYFISNVRALGE
Sbjct:  658 SERVAFAQLIDRVFLLARSFNFRVPPYFISNVRALGE 694
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BLAST of mRNA_H-canaliculatus_M_contigs76534.1.1 vs.
Match: ABC1 (family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ71_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 2.790e-8
Identity = 23/34 (67.65%), Postives = 30/34 (88.24%), Query Frame = 1 
Query:   13 VAFAQLIDRVFLLARSFNFVVPPYFISNVRALGE 114
            + FA ++DR+F LA+ FNFVVPPYF+SN+RALGE
Sbjct:  432 IPFASIVDRLFSLAQEFNFVVPPYFLSNLRALGE 465
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs76534.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
ABC11.970e-1497.30domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Integrase4.060e-1497.30catalytic domain-containing protein n=1 Tax=Ectoca... [more]
ABC12.790e-867.65family-domain-containing protein n=1 Tax=Tribonema... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs76534contigH-canaliculatus_M_contigs76534:163..294 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FNM7
PFAMsABC1,APH,DCP2,NUDIX
Model size132
Max annot lvl2759|Eukaryota
KEGG koko:K08869
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue3.23e-15
EggNOG OGsCOG0661@1|root,KOG1235@2759|Eukaryota
Descriptionregulation of tocopherol cyclase activity
Cds size132
COG categoryE
BRITEko00000,ko01001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854103.988513-CDS-H-canaliculatus_M_contigs76534:162..2941696854103.988513-CDS-H-canaliculatus_M_contigs76534:162..294Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs76534 163..294 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs76534.1.1prot_H-canaliculatus_M_contigs76534.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs76534 163..294 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs76534.1.1

>prot_H-canaliculatus_M_contigs76534.1.1 ID=prot_H-canaliculatus_M_contigs76534.1.1|Name=mRNA_H-canaliculatus_M_contigs76534.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=44bp
SSERVAFAQLIDRVFLLARSFNFVVPPYFISNVRALGESLPSW*
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mRNA from alignment at H-canaliculatus_M_contigs76534:163..294+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs76534.1.1 ID=mRNA_H-canaliculatus_M_contigs76534.1.1|Name=mRNA_H-canaliculatus_M_contigs76534.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=132bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76534:163..294+ (Hapterophycus canaliculatus Oshoro7m male)
TCGTCCGAGCGTGTGGCGTTTGCGCAGCTGATCGATCGCGTCTTCCTCTT
GGCGAGGTCATTCAACTTCGTCGTGCCCCCTTACTTCATCAGCAACGTGA
GGGCCTTGGGTGAGTCACTTCCCAGCTGGTAG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs76534:163..294+

>mRNA_H-canaliculatus_M_contigs76534.1.1 ID=mRNA_H-canaliculatus_M_contigs76534.1.1|Name=mRNA_H-canaliculatus_M_contigs76534.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=132bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76534:163..294+ (Hapterophycus canaliculatus Oshoro7m male)
TCGTCCGAGCGTGTGGCGTTTGCGCAGCTGATCGATCGCGTCTTCCTCTT
GGCGAGGTCATTCAACTTCGTCGTGCCCCCTTACTTCATCAGCAACGTGA
GGGCCTTGGGTGAGTCACTTCCCAGCTGGTAG
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