mRNA_H-canaliculatus_M_contigs76384.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs76384.1.1
Unique NamemRNA_H-canaliculatus_M_contigs76384.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs76384.1.1 vs.
Match: K+ (homeostasis protein Kha1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLK5_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 5.230e-15
Identity = 38/44 (86.36%), Postives = 40/44 (90.91%), Query Frame = 1 
Query:    1 FLFIVGLELDPALLQSNAKKATILSITGQGVTWVLSLGASRAMI 132
            FLFIVGLELDPALL+SNAKKA ILSITGQ VTWVLSLG S+ MI
Sbjct:  104 FLFIVGLELDPALLKSNAKKAGILSITGQAVTWVLSLGVSQTMI 147
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BLAST of mRNA_H-canaliculatus_M_contigs76384.1.1 vs.
Match: Sodium/hydrogen (exchanger family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3U5_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 2.090e-7
Identity = 23/37 (62.16%), Postives = 31/37 (83.78%), Query Frame = 1 
Query:    1 FLFIVGLELDPALLQSNAKKATILSITGQGVTWVLSL 111
            FLFIVGLELDP LL+ NAK++ ++S+ GQG+TWV  +
Sbjct:  100 FLFIVGLELDPRLLKDNAKRSLMISVGGQGLTWVFGV 136
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs76384.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
K+5.230e-1586.36homeostasis protein Kha1 n=1 Tax=Ectocarpus silicu... [more]
Sodium/hydrogen2.090e-762.16exchanger family-domain-containing protein n=1 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs76384contigH-canaliculatus_M_contigs76384:16..156 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LLK5
PFAMsNa_H_Exchanger
Model size141
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue8.58e-16
EggNOG OGsCOG0475@1|root,KOG1650@2759|Eukaryota
Descriptionsolute:proton antiporter activity
Cds size141
COG categoryP
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854102.3570428-CDS-H-canaliculatus_M_contigs76384:15..1561696854102.3570428-CDS-H-canaliculatus_M_contigs76384:15..156Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs76384 16..156 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs76384.1.1prot_H-canaliculatus_M_contigs76384.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs76384 16..156 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs76384.1.1

>prot_H-canaliculatus_M_contigs76384.1.1 ID=prot_H-canaliculatus_M_contigs76384.1.1|Name=mRNA_H-canaliculatus_M_contigs76384.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=47bp
FLFIVGLELDPALLQSNAKKATILSITGQGVTWVLSLGASRAMITW*
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mRNA from alignment at H-canaliculatus_M_contigs76384:16..156-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs76384.1.1 ID=mRNA_H-canaliculatus_M_contigs76384.1.1|Name=mRNA_H-canaliculatus_M_contigs76384.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=141bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76384:16..156- (Hapterophycus canaliculatus Oshoro7m male)
TTTCTGTTTATCGTGGGGCTGGAGCTAGACCCTGCGCTCCTGCAGTCGAA
CGCGAAGAAGGCGACCATCCTGTCCATCACGGGGCAAGGGGTCACGTGGG
TGCTCTCTCTGGGGGCGTCGAGGGCGATGATCACGTGGTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs76384:16..156-

>mRNA_H-canaliculatus_M_contigs76384.1.1 ID=mRNA_H-canaliculatus_M_contigs76384.1.1|Name=mRNA_H-canaliculatus_M_contigs76384.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=141bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76384:16..156- (Hapterophycus canaliculatus Oshoro7m male)
TTTCTGTTTATCGTGGGGCTGGAGCTAGACCCTGCGCTCCTGCAGTCGAA
CGCGAAGAAGGCGACCATCCTGTCCATCACGGGGCAAGGGGTCACGTGGG
TGCTCTCTCTGGGGGCGTCGAGGGCGATGATCACGTGGTGA
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