mRNA_H-canaliculatus_M_contigs76327.2.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs76327.2.1
Unique NamemRNA_H-canaliculatus_M_contigs76327.2.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs76327.2.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs76327contigH-canaliculatus_M_contigs76327:6..524 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1027273.GZ77_25885
PFAMsHemolysinCabind
Model size519
Max annot lvl135619|Oceanospirillales
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.00036
EggNOG OGsCOG2931@1|root,COG2931@2|Bacteria,1MU7T@1224|Proteobacteria,1RNK8@1236|Gammaproteobacteria,1XM3T@135619|Oceanospirillales
DescriptionHaemolysin-type calcium-binding repeat (2 copies)
Cds size519
COG categoryQ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854101.789897-CDS-H-canaliculatus_M_contigs76327:5..5241696854101.789897-CDS-H-canaliculatus_M_contigs76327:5..524Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs76327 6..524 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs76327.2.1prot_H-canaliculatus_M_contigs76327.2.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs76327 6..524 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs76327.2.1

>prot_H-canaliculatus_M_contigs76327.2.1 ID=prot_H-canaliculatus_M_contigs76327.2.1|Name=mRNA_H-canaliculatus_M_contigs76327.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=173bp
SSDTVFTLAGNDSVQASLGADSLDGGLGVDVIDYSGLLGVSRIQLSLDGS
QPAQVDVDGADDDIISSFENVIGTSGGDDIEGDSENNVFDGLAGNDVLAG
NGGDDELLGGQGDDWLSGGDGNDVLDGEQGRDTISYINAAGGVAVDLSVN
QTTNDGYGGTDVLRSIENVEGSA
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mRNA from alignment at H-canaliculatus_M_contigs76327:6..524+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs76327.2.1 ID=mRNA_H-canaliculatus_M_contigs76327.2.1|Name=mRNA_H-canaliculatus_M_contigs76327.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=519bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76327:6..524+ (Hapterophycus canaliculatus Oshoro7m male)
TCAAGTGATACGGTTTTTACTTTAGCGGGAAATGATTCAGTGCAAGCAAG
TCTGGGTGCTGATTCCTTGGATGGTGGCCTGGGTGTGGATGTCATTGACT
ATTCGGGATTGTTAGGCGTTTCTCGTATTCAATTGTCTTTGGATGGTTCT
CAACCTGCACAGGTTGACGTCGATGGTGCAGACGATGACATCATTAGTAG
TTTTGAGAATGTTATTGGAACCTCTGGTGGAGATGATATTGAGGGAGATT
CCGAAAACAATGTGTTCGACGGATTGGCTGGTAATGATGTTTTGGCAGGC
AATGGCGGCGACGATGAATTGTTGGGTGGTCAGGGAGACGATTGGCTTAG
TGGTGGCGATGGGAACGATGTGCTCGATGGCGAGCAAGGCCGTGACACCA
TAAGCTACATTAATGCAGCAGGTGGTGTGGCGGTAGATTTGTCAGTAAAC
CAGACAACTAATGATGGTTATGGTGGAACTGATGTGCTGCGTAGTATTGA
AAATGTTGAAGGTAGTGCG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs76327:6..524+

>mRNA_H-canaliculatus_M_contigs76327.2.1 ID=mRNA_H-canaliculatus_M_contigs76327.2.1|Name=mRNA_H-canaliculatus_M_contigs76327.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=519bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76327:6..524+ (Hapterophycus canaliculatus Oshoro7m male)
TCAAGTGATACGGTTTTTACTTTAGCGGGAAATGATTCAGTGCAAGCAAG
TCTGGGTGCTGATTCCTTGGATGGTGGCCTGGGTGTGGATGTCATTGACT
ATTCGGGATTGTTAGGCGTTTCTCGTATTCAATTGTCTTTGGATGGTTCT
CAACCTGCACAGGTTGACGTCGATGGTGCAGACGATGACATCATTAGTAG
TTTTGAGAATGTTATTGGAACCTCTGGTGGAGATGATATTGAGGGAGATT
CCGAAAACAATGTGTTCGACGGATTGGCTGGTAATGATGTTTTGGCAGGC
AATGGCGGCGACGATGAATTGTTGGGTGGTCAGGGAGACGATTGGCTTAG
TGGTGGCGATGGGAACGATGTGCTCGATGGCGAGCAAGGCCGTGACACCA
TAAGCTACATTAATGCAGCAGGTGGTGTGGCGGTAGATTTGTCAGTAAAC
CAGACAACTAATGATGGTTATGGTGGAACTGATGTGCTGCGTAGTATTGA
AAATGTTGAAGGTAGTGCG
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