mRNA_H-canaliculatus_M_contigs76261.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs76261.1.1
Unique NamemRNA_H-canaliculatus_M_contigs76261.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs76261.1.1 vs.
Match: Beta-galactosidase (n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC76_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 1.010e-18
Identity = 38/43 (88.37%), Postives = 40/43 (93.02%), Query Frame = 1 
Query:    1 MVERDKNHPSIIAWSLGNEAGLGPAHYAMAKWARGRDASRIIM 129
            MVERDKNHPSII+WSLGNEAGLGPAHYAM+KW R RD SRIIM
Sbjct:  216 MVERDKNHPSIISWSLGNEAGLGPAHYAMSKWLRVRDPSRIIM 258
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs76261.1.1 vs.
Match: Beta-galactosidase (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS01_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 1.220e-17
Identity = 37/43 (86.05%), Postives = 39/43 (90.70%), Query Frame = 1 
Query:    1 MVERDKNHPSIIAWSLGNEAGLGPAHYAMAKWARGRDASRIIM 129
            MVERDKNHPSII+WSLGNEAGLG AHYAM+KW R RD SRIIM
Sbjct:  628 MVERDKNHPSIISWSLGNEAGLGAAHYAMSKWLRVRDPSRIIM 670
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs76261.1.1 vs.
Match: Glyco_hydro_2_C ((Fragment) n=1 Tax=uncultured Caldicellulosiruptor sp. TaxID=569407 RepID=A0A060BUM5_9FIRM)

HSP 1 Score: 73.2 bits (178), Expect = 4.870e-16
Identity = 32/42 (76.19%), Postives = 34/42 (80.95%), Query Frame = 1 
Query:    1 MVERDKNHPSIIAWSLGNEAGLGPAHYAMAKWARGRDASRII 126
            MVERDKNHPSII WSLGNE+G G  H AMA W R RDASR+I
Sbjct:   35 MVERDKNHPSIIVWSLGNESGYGRNHDAMANWIRSRDASRLI 76
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs76261.1.1 vs.
Match: hypothetical (protein n=1 Tax=Lewinella persica TaxID=70998 RepID=UPI0003A98A1C)

HSP 1 Score: 79.0 bits (193), Expect = 5.150e-16
Identity = 33/42 (78.57%), Postives = 37/42 (88.10%), Query Frame = 1 
Query:    1 MVERDKNHPSIIAWSLGNEAGLGPAHYAMAKWARGRDASRII 126
            MVERDKNHPSI++WSLGNEAG GP H AMA W +GRDASR+I
Sbjct:  507 MVERDKNHPSIVSWSLGNEAGTGPNHAAMAAWIKGRDASRLI 548
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs76261.1.1 vs.
Match: hypothetical (protein n=1 Tax=Lewinella lacunae TaxID=1517758 RepID=UPI00165359E4)

HSP 1 Score: 76.6 bits (187), Expect = 3.350e-15
Identity = 31/42 (73.81%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:    1 MVERDKNHPSIIAWSLGNEAGLGPAHYAMAKWARGRDASRII 126
            MVERDKNHPSI++WSLGNEAG GP H AMA W +GRD SR++
Sbjct:  471 MVERDKNHPSIVSWSLGNEAGTGPNHAAMAAWVKGRDGSRML 512
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs76261.1.1 vs.
Match: Beta-galactosidase (n=1 Tax=Lewinella agarilytica TaxID=478744 RepID=A0A1H9K1K7_9BACT)

HSP 1 Score: 75.9 bits (185), Expect = 6.250e-15
Identity = 30/42 (71.43%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:    1 MVERDKNHPSIIAWSLGNEAGLGPAHYAMAKWARGRDASRII 126
            MVERDKNHPS+++WSLGNEAG GP H AMA W +GRD SR++
Sbjct:  472 MVERDKNHPSVVSWSLGNEAGTGPNHAAMAAWIKGRDGSRML 513
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs76261.1.1 vs.
Match: Beta-galactosidase (n=3 Tax=Azospirillaceae TaxID=2829815 RepID=A0A239J1X9_9PROT)

HSP 1 Score: 75.5 bits (184), Expect = 8.530e-15
Identity = 31/42 (73.81%), Postives = 35/42 (83.33%), Query Frame = 1 
Query:    1 MVERDKNHPSIIAWSLGNEAGLGPAHYAMAKWARGRDASRII 126
            MVERDKNHPSII WSLGNEAG+GP   AM KW +GRD SR++
Sbjct:  466 MVERDKNHPSIIFWSLGNEAGIGPTFEAMGKWVKGRDPSRLV 507
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs76261.1.1 vs.
Match: Beta-galactosidase (n=2 Tax=Cephaloticoccus capnophilus TaxID=1548208 RepID=A0A139SHF0_9BACT)

HSP 1 Score: 74.7 bits (182), Expect = 1.590e-14
Identity = 31/42 (73.81%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:    1 MVERDKNHPSIIAWSLGNEAGLGPAHYAMAKWARGRDASRII 126
            M+ERDKNHPSIIAWS+GNE+G GP H A+A WAR RD SR+I
Sbjct:  441 MIERDKNHPSIIAWSMGNESGYGPHHDAVAAWARHRDPSRVI 482
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs76261.1.1 vs.
Match: Beta-galactosidase (n=1 Tax=Caldilineae bacterium TaxID=2420332 RepID=A0A3M1HTB1_9CHLR)

HSP 1 Score: 74.7 bits (182), Expect = 1.590e-14
Identity = 32/42 (76.19%), Postives = 34/42 (80.95%), Query Frame = 1 
Query:    1 MVERDKNHPSIIAWSLGNEAGLGPAHYAMAKWARGRDASRII 126
            MVERDKNHPS+I WSLGNE+G GPAH AMA W RG D  RII
Sbjct:  435 MVERDKNHPSVIVWSLGNESGYGPAHDAMAGWIRGYDPDRII 476
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs76261.1.1 vs.
Match: DUF4981 (domain-containing protein n=1 Tax=Streptomyces actinomycinicus TaxID=1695166 RepID=UPI00191FD733)

HSP 1 Score: 74.7 bits (182), Expect = 1.590e-14
Identity = 32/42 (76.19%), Postives = 35/42 (83.33%), Query Frame = 1 
Query:    1 MVERDKNHPSIIAWSLGNEAGLGPAHYAMAKWARGRDASRII 126
            MVERDKNHPS++ WSLGNEAG G    AMAKW RGRDASR+I
Sbjct:  395 MVERDKNHPSVVVWSLGNEAGTGRGLTAMAKWIRGRDASRLI 436
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs76261.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Beta-galactosidase1.010e-1888.37n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 R... [more]
Beta-galactosidase1.220e-1786.05n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7... [more]
Glyco_hydro_2_C4.870e-1676.19(Fragment) n=1 Tax=uncultured Caldicellulosiruptor... [more]
hypothetical5.150e-1678.57protein n=1 Tax=Lewinella persica TaxID=70998 RepI... [more]
hypothetical3.350e-1573.81protein n=1 Tax=Lewinella lacunae TaxID=1517758 Re... [more]
Beta-galactosidase6.250e-1571.43n=1 Tax=Lewinella agarilytica TaxID=478744 RepID=A... [more]
Beta-galactosidase8.530e-1573.81n=3 Tax=Azospirillaceae TaxID=2829815 RepID=A0A239... [more]
Beta-galactosidase1.590e-1473.81n=2 Tax=Cephaloticoccus capnophilus TaxID=1548208 ... [more]
Beta-galactosidase1.590e-1476.19n=1 Tax=Caldilineae bacterium TaxID=2420332 RepID=... [more]
DUF49811.590e-1476.19domain-containing protein n=1 Tax=Streptomyces act... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs76261contigH-canaliculatus_M_contigs76261:70..201 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FS01
PFAMsBgal_small_N,DUF4981,Glyco_hydro_2,Glyco_hydro_2_C,Glyco_hydro_2_N
Model size132
Max annot lvl2759|Eukaryota
KEGG rclassRC00049,RC00452
KEGG koko:K01190
KEGG ReactionR01105,R01678,R03355,R04783,R06114
KEGG Pathwayko00052,ko00511,ko00600,ko01100,map00052,map00511,map00600,map01100
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue2e-18
EggNOG OGsCOG3250@1|root,KOG2024@2759|Eukaryota
EC3.2.1.23
Descriptionbeta-glucuronidase activity
Cds size132
COG categoryG
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854100.8753211-CDS-H-canaliculatus_M_contigs76261:69..2011696854100.8753211-CDS-H-canaliculatus_M_contigs76261:69..201Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs76261 70..201 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs76261.1.1prot_H-canaliculatus_M_contigs76261.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs76261 70..201 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs76261.1.1

>prot_H-canaliculatus_M_contigs76261.1.1 ID=prot_H-canaliculatus_M_contigs76261.1.1|Name=mRNA_H-canaliculatus_M_contigs76261.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=44bp
MVERDKNHPSIIAWSLGNEAGLGPAHYAMAKWARGRDASRIIM*
back to top

mRNA from alignment at H-canaliculatus_M_contigs76261:70..201-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs76261.1.1 ID=mRNA_H-canaliculatus_M_contigs76261.1.1|Name=mRNA_H-canaliculatus_M_contigs76261.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=132bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76261:70..201- (Hapterophycus canaliculatus Oshoro7m male)
ATGGTGGAACGGGATAAGAACCACCCGAGCATCATCGCATGGTCCCTTGG
AAACGAGGCCGGCCTAGGTCCGGCCCACTACGCCATGGCCAAGTGGGCCC
GCGGACGAGACGCGTCCAGGATCATCATGTGA
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs76261:70..201-

>mRNA_H-canaliculatus_M_contigs76261.1.1 ID=mRNA_H-canaliculatus_M_contigs76261.1.1|Name=mRNA_H-canaliculatus_M_contigs76261.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=132bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76261:70..201- (Hapterophycus canaliculatus Oshoro7m male)
ATGGTGGAACGGGATAAGAACCACCCGAGCATCATCGCATGGTCCCTTGG
AAACGAGGCCGGCCTAGGTCCGGCCCACTACGCCATGGCCAAGTGGGCCC
GCGGACGAGACGCGTCCAGGATCATCATGTGA
back to top