mRNA_H-canaliculatus_M_contigs761.2.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs761.2.1
Unique NamemRNA_H-canaliculatus_M_contigs761.2.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs761.2.1 vs.
Match: SET (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5T1_9PHAE)

HSP 1 Score: 468 bits (1203), Expect = 8.120e-156
Identity = 336/622 (54.02%), Postives = 375/622 (60.29%), Query Frame = 1
Query:    1 MGTPVRAAVGGLRALGPRAGLFADLLSCESKGFISANEGISESFPLVVRRGGAMGYGLCCGSRPA--------------RAGEEVLRVPPGLWLPYCAEAAVRKAEAGAPDVLARLSNACASVGGGADGSKLAPVACLALELLFSLERNGAKEPYLGLLWEASRSTGVLPHPLLMGPEHLELLQ--------ASPLRDSIMAASGIYGNIHRSLFGLKEDEDSGSPERENDHR---KRAPSASSTRDFLWAMGVILSRGVSEDAAGGTGLVPYLDFANHGDGP-----ARLDGGGWNSRASCERGFDASTGNHVLRALRDIEPGEELLIDYGSAAKGIYRFARTYGFLTYAKATATNTKSANGHDFDVNSVVKDGNNNGNEXXXXXXXE------------ERGQLAAGINNPPSPGSESCPYSGSALAKDSFRVRVGSSTPQTPQQXXXXXXPVVVPVLLADATGAQGRTCAQADTGHGAGENAASAGKSVTGAPDTMA-AVPAGARVASDETAAPSGAGAGAVAAEVIALEERLRRYPTSVEEDLELLLRKADDGPVEVEGA------------QESAAAAAAG---------GAVTAGWEGMCISVRVAEKLALKRALR 1674
            MGTPVRAAVG LRALGP A  FAD LSC +KGF++ANE +SESFPLVVRR GA GYGL CG RPA              R GEE+LRVPP +WLPYCAEAAVRKAEAGAPD LARLSN CA +GGG D  ++APVACLALELLF+LER+ A+EPYLGLLWEAS S   LPHPLLMGP+HL+LLQ        ASPLRDSI AAS IY  +HRSLFGL E  D+ S  R   H    + +PSAS+TRDFLWA+GVILSRGVSE+ AGG GLVPYLDFANHGDG      A  DGG     ASCERGFDA+TG HVLRALRDI PGEELLIDYGSAAKG YRFARTYGF+ + + T                           XXXXXXX              RG+   G               G     DS RV VG S+P   +Q  XXXX   VPV LAD       T  +           +        A D  + AV A A+ A+   AA  G      AAEV ALEERLRRYPT+ +EDLELL   A DG  E   A            + SAAA A G         GAVTA W   CIS+R AEK+AL+RALR
Sbjct:    1 MGTPVRAAVGRLRALGPHASGFADYLSCNTKGFLAANEEVSESFPLVVRRSGAKGYGLLCGPRPASLPLRPPQCSVPMERVGEELLRVPPAVWLPYCAEAAVRKAEAGAPDFLARLSNTCAKIGGG-DALEVAPVACLALELLFTLERD-AREPYLGLLWEASTSEDALPHPLLMGPDHLDLLQVGADTSAQASPLRDSITAASKIYSTLHRSLFGL-EGGDADSSSRGGVHHAGIQVSPSASTTRDFLWALGVILSRGVSEEGAGGVGLVPYLDFANHGDGGKGGGVALGDGG-----ASCERGFDAATGRHVLRALRDIAPGEELLIDYGSAAKGAYRFARTYGFVNFRQTTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRGRRLIG---------------GIPSGSDSLRVHVGLSSPAGQEQKEXXXX-XXVPVRLADVAXXXXXTFEEQVLEEPNRRLLSPETDQEGEAADVFSGAVAATAKFAAGARAAQPGTRVAVAAAEVEALEERLRRYPTTWQEDLELLGLVASDGTEEDNSADGTGGTRRPQTEKTSAAAGAKGAALKAGAASGAVTAEWAETCISLRAAEKIALQRALR 598          
BLAST of mRNA_H-canaliculatus_M_contigs761.2.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0R8_ECTSI)

HSP 1 Score: 390 bits (1003), Expect = 1.220e-129
Identity = 223/329 (67.78%), Postives = 241/329 (73.25%), Query Frame = 1
Query:    1 MGTPVRAAVGGLRALGPRAGLFADLLSCESKGFISANEGISESFPLVVRRGGAMGYGLCCGSRPARAGEEVLRVPPGLWLPYCAEAAVRKAEAGAPDVLARLSNACASVGGGADGSKLAPVACLALELLFSLER-------------------------NGAK---EPYLGLLWEASRSTGVLPHPLLMGPEHLELLQASPLRDSIMAASGIYGNIHRSLFGLKEDEDSGSPERENDHR---KRAPSASSTRDFLWAMGVILSRGVSEDAAGGTGLVPYLDFANHGDGP-----ARLDGGGWNSRASCERGFDASTGNHVLRALRDIEP 879
            MGTPVRAAVG LRALGP A  FAD LSC +KGF++ANE ISESFPLV RR GA GYGL CG RPARAGEE+LRVPP +WLPYCAEAAVRKAEAGAPD LARLSN CA +GGG D SK+APVACLALELLF+LER                         NGA+   EPYLGLLWEAS S   LPHPLLMGPEHL+LLQASPLRDSI AAS IY  +HR LFGL E  D+ S  R   H    + +PSAS+T DFLWA+GVILSRGVSE+ AGG GLVPYLDFANHGDG      A  DGG     ASCERGFD +TG HVLRALRDI P
Sbjct:    1 MGTPVRAAVGRLRALGPHASGFADYLSCNTKGFLAANEEISESFPLVARRSGAKGYGLLCGPRPARAGEELLRVPPAVWLPYCAEAAVRKAEAGAPDFLARLSNTCAKIGGG-DASKVAPVACLALELLFTLERIAKIVFTPQYSIEKEAGETFEKRHDNGARDAREPYLGLLWEASASEDALPHPLLMGPEHLDLLQASPLRDSITAASEIYSTLHRRLFGL-EGGDADSSSRGGVHHAGIEASPSASTTTDFLWALGVILSRGVSEEGAGGVGLVPYLDFANHGDGGRGGGVALGDGG-----ASCERGFDPATGRHVLRALRDIAP 322          
BLAST of mRNA_H-canaliculatus_M_contigs761.2.1 vs.
Match: SET (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL99_9STRA)

HSP 1 Score: 138 bits (347), Expect = 1.140e-31
Identity = 115/294 (39.12%), Postives = 143/294 (48.64%), Query Frame = 1
Query:  124 ESFPLVVRRGGAMGYGLCCGSRPARAGEEVLRVPPGLWLPYCAEAAVRKAEAGAPDVLARLSNACASVGGGADGSKLAPVACLALELLFSLERNG------AKEPYLGLLWEA-SRSTGVLPHPLLMGP-EHLELLQASPLRDSIMAASGIYGNIHRSLFGLKEDEDSGSPERENDHRKRAPSASSTRDFLWAMGVILSRGVSEDAAGGT--GLVPYLDFANHGDGPARLDGGGWNSRASCERGFDASTGNHVLRALRDIEPGEELLIDYGSAAKGIYRFARTYGFLTYAKATA 975
            +  PL+ R  G  GYGL   +R  RA + VLRVPP +WLP   E A ++A + AP    RL    A V    D   LA  A LAL L F+           A+    G + E   R +G  P PL     E LE LQASPL   I   +  Y  IH +LF        GSP  E+D R R       R F+  + ++LSR  S    GG    LVPY D  NH   P            SC + F+A+TG++ + ALRD  PGEELLIDYG+ AKG+Y+  RTYGF     A A
Sbjct:   35 DGLPLLFR--GPAGYGLRAPARGCRAADCVLRVPPEVWLPCSGEFAQQQAASRAPAFARRLHALHARV----DSPHLAHTAALALALQFAAAAEADPLHTYARLICGGAMGEGVERGSGPPPLPLARASAESLEHLQASPLAQDIRRRAAAYERIHAALF-------QGSP-LESDERAR-------RAFVGNVALLLSRATS---GGGMPFALVPYFDMLNHAAAPP-----------SCAQAFEAATGSYTVTALRDHAPGEELLIDYGARAKGVYQMVRTYGFADLRCAAA 293          
BLAST of mRNA_H-canaliculatus_M_contigs761.2.1 vs.
Match: Uncharacterized (protein n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2JFC6_9CHLO)

HSP 1 Score: 63.9 bits (154), Expect = 3.480e-7
Identity = 42/100 (42.00%), Postives = 54/100 (54.00%), Query Frame = 1
Query:  658 TRDFL-WAMGVILSRGVSEDAAGG-TGLVPYLDFANHGDGPARLDGGGWNSRASCERGFDASTGNHVLRALRDIEPGEELLIDYGSAAKGIYRFARTYGF 951
            TRD + WA+GV+LSR V  D+AGG T LVP+ DFANH            +  A C   FDA +G   +R  R   PGE++ I YG  + G      +YGF
Sbjct:  126 TRDSVRWAVGVLLSRSVRLDSAGGETVLVPFADFANH------------SVDADCFLDFDAGSGAVGVRLDRGYAPGEQVFISYGPKSSG--ELLLSYGF 211          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs761.2.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
SET8.120e-15654.02domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Uncharacterized1.220e-12967.78protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
SET1.140e-3139.12domain-containing protein n=1 Tax=Tribonema minus ... [more]
Uncharacterized3.480e-742.00protein n=1 Tax=Monoraphidium neglectum TaxID=1453... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs761contigH-canaliculatus_M_contigs761:3483..8485 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog296587.XP_002501628.1
PFAMsSET
Model size1674
Max annot lvl2759|Eukaryota
KEGG rclassRC00003,RC00060,RC00181,RC00496
KEGG koko:K19199
KEGG ReactionR03875,R04866,R04867
KEGG Pathwayko00310,map00310
Hectar predicted targeting categoryother localisation
Exons8
Evalue5.15e-09
EggNOG OGsKOG1337@1|root,KOG1337@2759|Eukaryota
EC2.1.1.43
Descriptionpeptidyl-lysine monomethylation
Cds size1674
COG categoryI
BRITEko00000,ko00001,ko01000,ko03036
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs761.2.1prot_H-canaliculatus_M_contigs761.2.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs761 3483..8485 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854098.813809-CDS-H-canaliculatus_M_contigs761:3482..42761696854098.813809-CDS-H-canaliculatus_M_contigs761:3482..4276Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs761 3483..4276 -
1696854098.8286972-CDS-H-canaliculatus_M_contigs761:4487..47391696854098.8286972-CDS-H-canaliculatus_M_contigs761:4487..4739Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs761 4488..4739 -
1696854098.8391252-CDS-H-canaliculatus_M_contigs761:5121..52391696854098.8391252-CDS-H-canaliculatus_M_contigs761:5121..5239Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs761 5122..5239 -
1696854098.8519425-CDS-H-canaliculatus_M_contigs761:5733..58421696854098.8519425-CDS-H-canaliculatus_M_contigs761:5733..5842Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs761 5734..5842 -
1696854098.8622239-CDS-H-canaliculatus_M_contigs761:6889..70201696854098.8622239-CDS-H-canaliculatus_M_contigs761:6889..7020Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs761 6890..7020 -
1696854098.8723893-CDS-H-canaliculatus_M_contigs761:7524..75971696854098.8723893-CDS-H-canaliculatus_M_contigs761:7524..7597Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs761 7525..7597 -
1696854098.8819275-CDS-H-canaliculatus_M_contigs761:7995..80991696854098.8819275-CDS-H-canaliculatus_M_contigs761:7995..8099Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs761 7996..8099 -
1696854098.8954158-CDS-H-canaliculatus_M_contigs761:8392..84851696854098.8954158-CDS-H-canaliculatus_M_contigs761:8392..8485Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs761 8393..8485 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs761.2.1

>prot_H-canaliculatus_M_contigs761.2.1 ID=prot_H-canaliculatus_M_contigs761.2.1|Name=mRNA_H-canaliculatus_M_contigs761.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=558bp
MGTPVRAAVGGLRALGPRAGLFADLLSCESKGFISANEGISESFPLVVRR
GGAMGYGLCCGSRPARAGEEVLRVPPGLWLPYCAEAAVRKAEAGAPDVLA
RLSNACASVGGGADGSKLAPVACLALELLFSLERNGAKEPYLGLLWEASR
STGVLPHPLLMGPEHLELLQASPLRDSIMAASGIYGNIHRSLFGLKEDED
SGSPERENDHRKRAPSASSTRDFLWAMGVILSRGVSEDAAGGTGLVPYLD
FANHGDGPARLDGGGWNSRASCERGFDASTGNHVLRALRDIEPGEELLID
YGSAAKGIYRFARTYGFLTYAKATATNTKSANGHDFDVNSVVKDGNNNGN
ESRNDLRNEERGQLAAGINNPPSPGSESCPYSGSALAKDSFRVRVGSSTP
QTPQQQQQQPQPVVVPVLLADATGAQGRTCAQADTGHGAGENAASAGKSV
TGAPDTMAAVPAGARVASDETAAPSGAGAGAVAAEVIALEERLRRYPTSV
EEDLELLLRKADDGPVEVEGAQESAAAAAAGGAVTAGWEGMCISVRVAEK
LALKRALR
back to top

mRNA from alignment at H-canaliculatus_M_contigs761:3483..8485-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs761.2.1 ID=mRNA_H-canaliculatus_M_contigs761.2.1|Name=mRNA_H-canaliculatus_M_contigs761.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=5003bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs761:3483..8485- (Hapterophycus canaliculatus Oshoro7m male)
ATGGGAACTCCCGTCCGCGCTGCCGTCGGAGGGCTGAGGGCCCTCGGGCC TCGTGCAGGCCTTTTCGCGGATCTCCTGTCGTGCGAGAGCAAGGTGACGG GAGAATGTAGCTCCAAAGCTTTGGAGTATCGGTTGGCACAATCTTATGTT GCCCGCCTTGAACGGTTGCTTCGCTTCGCGTGAGACCAGGCCCACGGCAG CACCTTTGATATCATACCTCATTCTGACCTCGTTCTGTTAGAGGGTGCAT TTTGAAGTACCTGACTTCTTTGCGGAACAGGTCCACCTACTACACGCAAG CACGTTGCAACTACAGGATAAAACCCGCGAAGACTTGGGTGTATAAATGA GGTCTTTCTGTCTGTCCGTGTTGTGTGCTCCGTTAGGGCTTCATCTCTGC AAACGAAGGAATCTCCGAGAGCTTTCCGCTCGTGGTGAGAAGAGGCGGCG CAATGGGGTACGGGCTATGTTGCGGATCACGCCCGGCGAGGTAATTTGTT TTCGAGCAGCAATCTTTAGATCTTCGACTGGTTTGCCGTGTCACCTTACC TTCAGCAAGCCGGCATTTTGCGTACAGTGTGCACCTCGCACGACAGTCGT CACGGAGTTGCGGCCCTCGTTCGTGTAAGATGTAAGGCGATTTCGCGGTC GAAGGAAGCGGCGTAGGAGAGGAAGACGCGGAACAAGTTCTTCCTTGCTG GCCTCTACCCGTATCTCTGTACCGTGTGCTCCAAAACGAGCGAGCGCCGC TCGAATATCGCGCACCTGGTCTTGTGTTTTCGGTGCTGGCGCTCTCCGCT TACGGGTATAGGTCATCAAACCCATCACGATGCATCCCCCTTTCCCCGAT GCCTGTTGGCCCCATATTGTTCGCTTCCGTCTTGGGAGGGCTGGAGAGGA GGTGCTACGAGTACCCCCCGGGTTGTGGCTACCCTACTGCGCGGAAGCTG CTGTTCGAAAGGTCAAATGTCGCTCATCGTGTTGATCAAGAATGACTGTC GCTACTGCAAGCGCTCCGTGGTCGAACAGCAGAAGTCGACCGCCGCGGGT TTCGACGACTCGAAAATCGTAGCGTGAAAGGAAGTGTCTATCGTAGTTTG TGGCCTGCCCAGTGCCCACCACAGCACGCTTTTGACGGTTTCGGCAGTGA TAGGCGATGGTTGTGGCATGGATTTTGGAAGTGCTTGTCGTGGTGGAGGT GGGGGTGGCGGCCGCGCTGATTACGTTGGCGGCAGCAAAGTTTGAGGTTG GCGATCTTAGTAGAGATTTGGCGAATTCGTACCACGGCTTTTGATCAAGG AAATGGAGTTTCACGGCGACGATGGGACGATCCGTTCGGTGGGCGATCAT GTGTTGTCTATCCTTTTCCGCCTTCTCCACGGGATTGTTTCCGAGGCAAT CCCATCCTTCATTTCCGCGATCTCGAGTCTTCCGCTCCCTTTCTACCTTT CCAACCCGTCCACAGGCCGAAGCCGGGGCTCCCGACGTCCTGGCCCGCCT GAGTAACGCCTGCGCTAGTGTTGGGGGAGGCGCCGATGGTTCTAAACTAG CTCCAGTAGCCTGCCTCGCCCTGGAGCTTCTTTTTTCCCTCGAGAGGTAC TCGGCGTACCACCAGATTGCAAGAATCGTGTCTGCCGCGGGAGGTGTAGT AGGATGGGATCAAGTACTTTGCAAAGTTTCAGGTTTCGGTGTCGCCGCCA AGCCTCTCAGGTTAGCCAATACCCATACCATACCGGGCAGCATCGAGTTA CACGGAGTACCAACAAAGTCACGCGGGGCGATGAGGAAGCGATATCAGGT TAAGCTCTGATCCCAGTCCATCCCTCGTCTGGAGAAAATCACCTGATGTC GCACAAAATAAAAAGTTGTTCCGTCAGGTTCTTTCTGCCTGAGCGGTATT TTGATCTGTTCTGGTCTACGGTATATTCTAGAGATTTGGTGGCACAGAAA CCGCCGTGCGTACTCCCGCTGTATGGAGGAAAGCTGAGCCCTGTAGATTG TCAGTATATCCACGGCGGACGGTGAGCTCCCGCACAAAAGTGGTATGCCG AAGGGCCAGGATTCAGGTACCCCAAGACGAAGAGACGACGGTCTGCGAAA ATGCCGTCCCTCTTGAGCTCGAGCCAGACTTCACCGTTTGCATTTCCTCG CGCCAATGATCGCCAGCAAGTACGCCGGTAGCACGGGTTGTACTTTCCTT TTCCCGCATCATATTTGCATCTTAATCGATCGGGAGGAGGACTAGATGTA TTTGCCTGATTGACGATAACCCCGCACGGAATAGACCCCGGCATTACAAG GGTACCAAGATAGAATCAGGGTGTGTGCAAATATGCACCCCCGGTTGGTG ATGCAAATTTTCCAGTTTTTGTTTCTGTCTCACATCACTTGTAGAGAGGA GCGAAGGGCTCCAGAATTTGTCTCTGATTTATATCGCTTCGCTGACCCTT CGGGTCCACTTTATTAGAGTACCTTTGGGGGGTAAGTAAGCCTGTGACCA CGGGAGCCGACCTCGTCAACTGTTGGATCAGTACGGACAGATAGAGGTTC TGGGTATAGAGATCGGAAAGGTTTTTAATTTGAAGACATCACCAGCAACA AGAACAACAGCAACAACAAAACTCCACTTTTCCTTCACGGCAGGAACGGA GCCAAGGAGCCATACCTTGGGCTGCTATGGGAAGCATCCAGGTCCACGGG TGTGTTGCCTCACCCTCTCCTCATGGGACCGGAACACCTGGAGTTACTGC AGGTATCCATCTACCTGCATGAGGTGGATTTTCTCCTGCGTAAACAAATG CTTTAGTTTCGTTTGTCTTGTTTAAACCTATGCTCCTACTCCATCTACTT CCAAAACACGAGCCGGGTGTCCTGCGTAAAACACAGTTGTAATGATGGCA TTTTTTGCTTTTCAGTCTAGTTTAAACCTTCACTTCTGCTTCTAGTTGTA TTTTTCCGTTTGCAAATCACGGCATGCCTAATGTTTGTCTGCCTGTGAAC ACCGAATGACGTCGTATCCCGTGATCGCTATGAAAGTGCGTAAAAGGGAA ATTGTCTTTCACCAAAAGCGAACGAGGCGATGGCTTTCAAGCCGGTGAAG ACGGAAGGTAGATATGCCACGCTGTCAAAAGGAAGGGTGGTGCTTGATTC GTTCTTCACAGTTACCCACGGCTCAACGCTCTGTTCTCCGTATATCCCCC ACCCCCTATCCCACTTCGCCGTGCTGTTTTGTGGATGTCTGTGCAGGCCA GCCCTTTGCGTGATTCCATCATGGCCGCCTCTGGGATATACGGCAATATC CACCGAAGTCTGTTCGGACTGAAGGAGGACGAAGACTCGGGGTCCCCTGA AAGGGAGAATGATCGTGGTGCGTGAGTCCCCCGCGCTCCGTAGCGAAGCA AATGTCCAGGGTTCACCAATCTACAAGGCCTTTGTGTTTTCAGTCGAAAG GTTCCGCTGCGGCCACCGGTCCCACCAGAAATACCGCTCACCCGCAGTCC CTCGCAGCATTGGGTGACGTCTCTTCTTTGACTATTGTAGAGATCACTCC GGTTGTTACTGGTACATAGCATAGCAATACCTCTGACCTCTCGTCCACCC GCTCGTTACCGCTCTGCACTCTGAGCGCTTTCCGTTCTGACTGCTGATAA CGGTTGCAATTTTCAGTCCGGTTCGGTCTGGTGTCACGCCGAAAAGGAAA TCGACCCCCTCCCCCCCCCCCCCCTCGAACTGGGATCCTACCCCAGATCG GAAAAGGGCACCCTCAGCCTCATCGACGAGGGATTTCCTATGGGCTATGG GCGTGATCCTTTCGAGAGGTGTCTCTGAGGACGCGGCGGGGGGCACAGGT CTCGTACCCTACCTCGACTTCGCCAACCACGGCGATGGCCCTGCACGACT GGATGGCGGCGGCTGGAACAGCCGCGCCTCATGCGAGAGAGGGTTCGACG CGTCTACCGGGAACCACGTGCTTCGGGCGCTACGGGATATTGAGCCTGGT GAGTTTTATGGTGTCTCGGTCCACGCTCCCCGCTGCGCAATCTCTTCATC TCGTTCCGACCCCACGGGCGTCATACCACAGCCAGCCAGCCAGCCAGCCA GCCAGCCCATGCTGTTCATTCTACAACCCTCTGCTTCACCCATATTTAAG GTGTTTTGTCTCCCACGTGTTGCTGGTTTTATGGATACCTCTGTATCTGC TACCTCCAGGGGAAGAGCTCTTGATAGACTACGGATCGGCAGCGAAGGGG ATTTATCGGTTCGCCAGAACATACGGGTTCCTAACTTACGCCAAAGCCAC CGCAACCAACACCAAGAGCGCCAACGGCCACGACTTTGACGTTAACAGCG TCGTCAAGGACGGGAACAACAACGGGAATGAGAGCAGAAACGACCTTCGA AACGAAGAGCGGGGGCAACTAGCAGCCGGCATCAACAACCCCCCTTCCCC GGGGTCGGAGTCGTGCCCGTATTCTGGCTCGGCGTTGGCGAAAGACTCCT TCCGCGTCCGCGTCGGGTCGTCGACGCCTCAAACGCCTCAGCAGCAGCAG CAGCAGCCACAGCCGGTGGTGGTGCCGGTGCTGCTTGCAGATGCCACCGG GGCACAGGGGCGGACGTGTGCCCAGGCGGATACCGGGCACGGGGCTGGAG AGAACGCGGCTTCCGCCGGTAAGTCGGTAACCGGCGCCCCTGATACGATG GCGGCAGTGCCGGCAGGAGCGAGGGTTGCATCGGACGAAACGGCGGCCCC TTCAGGCGCGGGGGCGGGGGCGGTGGCAGCAGAGGTCATTGCCCTCGAAG AGCGACTGCGCCGCTATCCCACAAGTGTGGAAGAGGATCTAGAGCTGCTG CTGCGAAAAGCAGACGACGGGCCAGTCGAGGTTGAGGGAGCGCAAGAGTC CGCAGCGGCGGCAGCAGCAGGCGGGGCGGTGACCGCTGGGTGGGAGGGTA TGTGCATCTCTGTGAGGGTAGCGGAGAAACTCGCGCTGAAGCGGGCGCTG CGC
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs761:3483..8485-

>mRNA_H-canaliculatus_M_contigs761.2.1 ID=mRNA_H-canaliculatus_M_contigs761.2.1|Name=mRNA_H-canaliculatus_M_contigs761.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=1674bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs761:3483..8485- (Hapterophycus canaliculatus Oshoro7m male)
ATGGGAACTCCCGTCCGCGCTGCCGTCGGAGGGCTGAGGGCCCTCGGGCC
TCGTGCAGGCCTTTTCGCGGATCTCCTGTCGTGCGAGAGCAAGGGCTTCA
TCTCTGCAAACGAAGGAATCTCCGAGAGCTTTCCGCTCGTGGTGAGAAGA
GGCGGCGCAATGGGGTACGGGCTATGTTGCGGATCACGCCCGGCGAGGGC
TGGAGAGGAGGTGCTACGAGTACCCCCCGGGTTGTGGCTACCCTACTGCG
CGGAAGCTGCTGTTCGAAAGGCCGAAGCCGGGGCTCCCGACGTCCTGGCC
CGCCTGAGTAACGCCTGCGCTAGTGTTGGGGGAGGCGCCGATGGTTCTAA
ACTAGCTCCAGTAGCCTGCCTCGCCCTGGAGCTTCTTTTTTCCCTCGAGA
GGAACGGAGCCAAGGAGCCATACCTTGGGCTGCTATGGGAAGCATCCAGG
TCCACGGGTGTGTTGCCTCACCCTCTCCTCATGGGACCGGAACACCTGGA
GTTACTGCAGGCCAGCCCTTTGCGTGATTCCATCATGGCCGCCTCTGGGA
TATACGGCAATATCCACCGAAGTCTGTTCGGACTGAAGGAGGACGAAGAC
TCGGGGTCCCCTGAAAGGGAGAATGATCATCGGAAAAGGGCACCCTCAGC
CTCATCGACGAGGGATTTCCTATGGGCTATGGGCGTGATCCTTTCGAGAG
GTGTCTCTGAGGACGCGGCGGGGGGCACAGGTCTCGTACCCTACCTCGAC
TTCGCCAACCACGGCGATGGCCCTGCACGACTGGATGGCGGCGGCTGGAA
CAGCCGCGCCTCATGCGAGAGAGGGTTCGACGCGTCTACCGGGAACCACG
TGCTTCGGGCGCTACGGGATATTGAGCCTGGGGAAGAGCTCTTGATAGAC
TACGGATCGGCAGCGAAGGGGATTTATCGGTTCGCCAGAACATACGGGTT
CCTAACTTACGCCAAAGCCACCGCAACCAACACCAAGAGCGCCAACGGCC
ACGACTTTGACGTTAACAGCGTCGTCAAGGACGGGAACAACAACGGGAAT
GAGAGCAGAAACGACCTTCGAAACGAAGAGCGGGGGCAACTAGCAGCCGG
CATCAACAACCCCCCTTCCCCGGGGTCGGAGTCGTGCCCGTATTCTGGCT
CGGCGTTGGCGAAAGACTCCTTCCGCGTCCGCGTCGGGTCGTCGACGCCT
CAAACGCCTCAGCAGCAGCAGCAGCAGCCACAGCCGGTGGTGGTGCCGGT
GCTGCTTGCAGATGCCACCGGGGCACAGGGGCGGACGTGTGCCCAGGCGG
ATACCGGGCACGGGGCTGGAGAGAACGCGGCTTCCGCCGGTAAGTCGGTA
ACCGGCGCCCCTGATACGATGGCGGCAGTGCCGGCAGGAGCGAGGGTTGC
ATCGGACGAAACGGCGGCCCCTTCAGGCGCGGGGGCGGGGGCGGTGGCAG
CAGAGGTCATTGCCCTCGAAGAGCGACTGCGCCGCTATCCCACAAGTGTG
GAAGAGGATCTAGAGCTGCTGCTGCGAAAAGCAGACGACGGGCCAGTCGA
GGTTGAGGGAGCGCAAGAGTCCGCAGCGGCGGCAGCAGCAGGCGGGGCGG
TGACCGCTGGGTGGGAGGGTATGTGCATCTCTGTGAGGGTAGCGGAGAAA
CTCGCGCTGAAGCGGGCGCTGCGC
back to top