mRNA_H-canaliculatus_M_contigs75867.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs75867.1.1
Unique NamemRNA_H-canaliculatus_M_contigs75867.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs75867.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6TWS2_POCDA)

HSP 1 Score: 149 bits (377), Expect = 5.280e-44
Identity = 73/80 (91.25%), Postives = 73/80 (91.25%), Query Frame = 1
Query:    1 TRLKEHQKAVFFCKKENSALSEHTCLTNHTIGWDNSKIIITNRRYH*CLCLEALHINSAHAPLNRDDGGLLPDAYLHLVR 240
            TRLKEHQKAVF  KKENSALSEHTCLTNHTIGWDNSKII TNRRYH  L LEA HINSAHAPLNRDDGGLLPDAYLHLVR
Sbjct:  125 TRLKEHQKAVFLGKKENSALSEHTCLTNHTIGWDNSKIITTNRRYHQRLRLEAWHINSAHAPLNRDDGGLLPDAYLHLVR 204          
BLAST of mRNA_H-canaliculatus_M_contigs75867.1.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6V5T8_POCDA)

HSP 1 Score: 133 bits (334), Expect = 1.400e-38
Identity = 68/80 (85.00%), Postives = 68/80 (85.00%), Query Frame = 1
Query:    1 TRLKEHQKAVFFCKKENSALSEHTCLTNHTIGWDNSKIIITNRRYH*CLCLEALHINSAHAPLNRDDGGLLPDAYLHLVR 240
            TRLKEHQKA      ENSALSEHTCLTNHTIG DNSKII TNRRYH  LCLEA HINSAHAPLN DDGGLLPDAYLHLVR
Sbjct:   44 TRLKEHQKA------ENSALSEHTCLTNHTIGCDNSKIITTNRRYHQRLCLEAWHINSAHAPLNLDDGGLLPDAYLHLVR 117          
BLAST of mRNA_H-canaliculatus_M_contigs75867.1.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6UJI4_POCDA)

HSP 1 Score: 134 bits (338), Expect = 5.440e-36
Identity = 65/80 (81.25%), Postives = 67/80 (83.75%), Query Frame = 1
Query:    1 TRLKEHQKAVFFCKKENSALSEHTCLTNHTIGWDNSKIIITNRRYH*CLCLEALHINSAHAPLNRDDGGLLPDAYLHLVR 240
            T LKEHQK VFFCKKENSAL EHTCLTNHTI WD SKII TNR Y+  LCLEA HINSAHAPLN DDG +LPDAYL LVR
Sbjct:  348 THLKEHQKVVFFCKKENSALWEHTCLTNHTIEWDKSKIISTNRHYYHPLCLEARHINSAHAPLNHDDGRVLPDAYLCLVR 427          
BLAST of mRNA_H-canaliculatus_M_contigs75867.1.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6UJ31_POCDA)

HSP 1 Score: 132 bits (333), Expect = 2.950e-35
Identity = 62/71 (87.32%), Postives = 64/71 (90.14%), Query Frame = 1
Query:    1 TRLKEHQKAVFFCKKENSALSEHTCLTNHTIGWDNSKIIITNRRYH*CLCLEALHINSAHAPLNRDDGGLL 213
            T LKEHQKAVF CKKENSALSEH+CLTNHTIGWDNSKII TN RYH CLCLEA HINSAHAPLNRDDG L+
Sbjct:  248 TWLKEHQKAVFLCKKENSALSEHSCLTNHTIGWDNSKIITTNWRYHQCLCLEAWHINSAHAPLNRDDGDLV 318          
BLAST of mRNA_H-canaliculatus_M_contigs75867.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6UN35_POCDA)

HSP 1 Score: 101 bits (252), Expect = 2.320e-25
Identity = 50/62 (80.65%), Postives = 50/62 (80.65%), Query Frame = 1
Query:    1 TRLKEHQKAVFFCKKENSALSEHTCLTNHTIGWDNSKIIITNRRYH*CLCLEALHINSAHAP 186
            T LKEHQKA FFCKKEN ALSEHTCLTNHTI  DNSKII TN  YH  LCLEA HIN AHAP
Sbjct:  125 THLKEHQKAAFFCKKENLALSEHTCLTNHTIEKDNSKIITTNPCYHQHLCLEAWHINFAHAP 186          
BLAST of mRNA_H-canaliculatus_M_contigs75867.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6UR58_POCDA)

HSP 1 Score: 93.6 bits (231), Expect = 6.480e-22
Identity = 44/56 (78.57%), Postives = 45/56 (80.36%), Query Frame = 1
Query:    1 TRLKEHQKAVFFCKKENSALSEHTCLTNHTIGWDNSKIIITNRRYH*CLCLEALHI 168
            T LKEH+KAVFF KKENS  SEHTCLTNHTIGWDNS  I T RRYH  LCLEA HI
Sbjct:  154 THLKEHKKAVFFSKKENSTSSEHTCLTNHTIGWDNSTTITTKRRYHQRLCLEAWHI 209          
BLAST of mRNA_H-canaliculatus_M_contigs75867.1.1 vs.
Match: Ig-like (domain-containing protein n=1 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6ULI1_POCDA)

HSP 1 Score: 88.2 bits (217), Expect = 1.350e-18
Identity = 40/44 (90.91%), Postives = 41/44 (93.18%), Query Frame = 1
Query:    1 TRLKEHQKAVFFCKKENSALSEHTCLTNHTIGWDNSKIIITNRR 132
            TRLKEHQKAVF CKKENSALSEHTCLTNHTIGWDNSKII T R+
Sbjct:  327 TRLKEHQKAVFLCKKENSALSEHTCLTNHTIGWDNSKIITTKRQ 370          
BLAST of mRNA_H-canaliculatus_M_contigs75867.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6TYB8_POCDA)

HSP 1 Score: 73.6 bits (179), Expect = 1.440e-13
Identity = 33/35 (94.29%), Postives = 33/35 (94.29%), Query Frame = 1
Query:    1 TRLKEHQKAVFFCKKENSALSEHTCLTNHTIGWDN 105
            TRLKE QKAVFFCKKENSALSEHTCLT HTIGWDN
Sbjct:  306 TRLKELQKAVFFCKKENSALSEHTCLTKHTIGWDN 340          
BLAST of mRNA_H-canaliculatus_M_contigs75867.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6TL40_POCDA)

HSP 1 Score: 65.1 bits (157), Expect = 1.120e-11
Identity = 30/32 (93.75%), Postives = 30/32 (93.75%), Query Frame = 1
Query:    1 TRLKEHQKAVFFCKKENSALSEHTCLTNHTIG 96
            TRLKEHQKAVFF KKENSA SEHTCLTNHTIG
Sbjct:   95 TRLKEHQKAVFFSKKENSASSEHTCLTNHTIG 126          
BLAST of mRNA_H-canaliculatus_M_contigs75867.1.1 vs.
Match: uncharacterized (protein LOC120347973 n=1 Tax=Styela clava TaxID=7725 RepID=UPI00193A372E)

HSP 1 Score: 64.7 bits (156), Expect = 2.440e-10
Identity = 36/80 (45.00%), Postives = 44/80 (55.00%), Query Frame = 1
Query:    1 TRLKEHQKAVFFCKKENSALSEHTCLTNHTIGWDNSKIIITNRRYH*CLCLEALHINSAHAPLNRDDGGLLPDAYLHLVR 240
            TR KEHQ+ V   K E SALS+H   T+H+I WDNS+I+     Y   L LE+ HIN     +N  D  L P  Y  L R
Sbjct:  539 TRRKEHQRDVKQKKFEKSALSKHALSTDHSIDWDNSRILEHEIHYRKRLFLESYHINKEKNSMNNKDTTLFPHVYKSLFR 618          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs75867.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
Uncharacterized5.280e-4491.25protein n=1 Tax=Pocillopora damicornis TaxID=46731... [more]
Uncharacterized1.400e-3885.00protein (Fragment) n=1 Tax=Pocillopora damicornis ... [more]
Uncharacterized5.440e-3681.25protein (Fragment) n=1 Tax=Pocillopora damicornis ... [more]
Uncharacterized2.950e-3587.32protein (Fragment) n=1 Tax=Pocillopora damicornis ... [more]
Uncharacterized2.320e-2580.65protein n=1 Tax=Pocillopora damicornis TaxID=46731... [more]
Uncharacterized6.480e-2278.57protein n=1 Tax=Pocillopora damicornis TaxID=46731... [more]
Ig-like1.350e-1890.91domain-containing protein n=1 Tax=Pocillopora dami... [more]
Uncharacterized1.440e-1394.29protein n=1 Tax=Pocillopora damicornis TaxID=46731... [more]
Uncharacterized1.120e-1193.75protein n=1 Tax=Pocillopora damicornis TaxID=46731... [more]
uncharacterized2.440e-1045.00protein LOC120347973 n=1 Tax=Styela clava TaxID=77... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs75867contigH-canaliculatus_M_contigs75867:295..534 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start0
Model size240
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size141
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854096.1409445-UTR-H-canaliculatus_M_contigs75867:294..3931696854096.1409445-UTR-H-canaliculatus_M_contigs75867:294..393Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs75867 295..393 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854096.1545608-CDS-H-canaliculatus_M_contigs75867:393..5341696854096.1545608-CDS-H-canaliculatus_M_contigs75867:393..534Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs75867 394..534 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs75867.1.1prot_H-canaliculatus_M_contigs75867.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs75867 394..534 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs75867.1.1

>prot_H-canaliculatus_M_contigs75867.1.1 ID=prot_H-canaliculatus_M_contigs75867.1.1|Name=mRNA_H-canaliculatus_M_contigs75867.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=47bp
TRLKEHQKAVFFCKKENSALSEHTCLTNHTIGWDNSKIIITNRRYH*
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mRNA from alignment at H-canaliculatus_M_contigs75867:295..534-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs75867.1.1 ID=mRNA_H-canaliculatus_M_contigs75867.1.1|Name=mRNA_H-canaliculatus_M_contigs75867.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=240bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75867:295..534- (Hapterophycus canaliculatus Oshoro7m male)
ACACGTCTGAAAGAGCACCAAAAAGCGGTTTTCTTTTGCAAAAAGGAAAA TTCAGCTTTATCGGAGCACACATGCCTAACCAACCATACAATTGGGTGGG ATAATTCTAAAATTATCATCACTAATCGGCGTTACCACTAATGCCTTTGT TTGGAGGCTTTGCATATTAACTCCGCCCACGCTCCTTTAAATCGTGACGA TGGCGGCTTGCTTCCTGACGCCTATTTACACCTCGTCAGA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs75867:295..534-

>mRNA_H-canaliculatus_M_contigs75867.1.1 ID=mRNA_H-canaliculatus_M_contigs75867.1.1|Name=mRNA_H-canaliculatus_M_contigs75867.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=141bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75867:295..534- (Hapterophycus canaliculatus Oshoro7m male)
ACACGTCTGAAAGAGCACCAAAAAGCGGTTTTCTTTTGCAAAAAGGAAAA
TTCAGCTTTATCGGAGCACACATGCCTAACCAACCATACAATTGGGTGGG
ATAATTCTAAAATTATCATCACTAATCGGCGTTACCACTAA
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