mRNA_H-canaliculatus_M_contigs75867.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male
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Overview
Homology
BLAST of mRNA_H-canaliculatus_M_contigs75867.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6TWS2_POCDA) HSP 1 Score: 149 bits (377), Expect = 5.280e-44 Identity = 73/80 (91.25%), Postives = 73/80 (91.25%), Query Frame = 1
Query: 1 TRLKEHQKAVFFCKKENSALSEHTCLTNHTIGWDNSKIIITNRRYH*CLCLEALHINSAHAPLNRDDGGLLPDAYLHLVR 240
TRLKEHQKAVF KKENSALSEHTCLTNHTIGWDNSKII TNRRYH L LEA HINSAHAPLNRDDGGLLPDAYLHLVR
Sbjct: 125 TRLKEHQKAVFLGKKENSALSEHTCLTNHTIGWDNSKIITTNRRYHQRLRLEAWHINSAHAPLNRDDGGLLPDAYLHLVR 204
BLAST of mRNA_H-canaliculatus_M_contigs75867.1.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6V5T8_POCDA) HSP 1 Score: 133 bits (334), Expect = 1.400e-38 Identity = 68/80 (85.00%), Postives = 68/80 (85.00%), Query Frame = 1
Query: 1 TRLKEHQKAVFFCKKENSALSEHTCLTNHTIGWDNSKIIITNRRYH*CLCLEALHINSAHAPLNRDDGGLLPDAYLHLVR 240
TRLKEHQKA ENSALSEHTCLTNHTIG DNSKII TNRRYH LCLEA HINSAHAPLN DDGGLLPDAYLHLVR
Sbjct: 44 TRLKEHQKA------ENSALSEHTCLTNHTIGCDNSKIITTNRRYHQRLCLEAWHINSAHAPLNLDDGGLLPDAYLHLVR 117
BLAST of mRNA_H-canaliculatus_M_contigs75867.1.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6UJI4_POCDA) HSP 1 Score: 134 bits (338), Expect = 5.440e-36 Identity = 65/80 (81.25%), Postives = 67/80 (83.75%), Query Frame = 1
Query: 1 TRLKEHQKAVFFCKKENSALSEHTCLTNHTIGWDNSKIIITNRRYH*CLCLEALHINSAHAPLNRDDGGLLPDAYLHLVR 240
T LKEHQK VFFCKKENSAL EHTCLTNHTI WD SKII TNR Y+ LCLEA HINSAHAPLN DDG +LPDAYL LVR
Sbjct: 348 THLKEHQKVVFFCKKENSALWEHTCLTNHTIEWDKSKIISTNRHYYHPLCLEARHINSAHAPLNHDDGRVLPDAYLCLVR 427
BLAST of mRNA_H-canaliculatus_M_contigs75867.1.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6UJ31_POCDA) HSP 1 Score: 132 bits (333), Expect = 2.950e-35 Identity = 62/71 (87.32%), Postives = 64/71 (90.14%), Query Frame = 1
Query: 1 TRLKEHQKAVFFCKKENSALSEHTCLTNHTIGWDNSKIIITNRRYH*CLCLEALHINSAHAPLNRDDGGLL 213
T LKEHQKAVF CKKENSALSEH+CLTNHTIGWDNSKII TN RYH CLCLEA HINSAHAPLNRDDG L+
Sbjct: 248 TWLKEHQKAVFLCKKENSALSEHSCLTNHTIGWDNSKIITTNWRYHQCLCLEAWHINSAHAPLNRDDGDLV 318
BLAST of mRNA_H-canaliculatus_M_contigs75867.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6UN35_POCDA) HSP 1 Score: 101 bits (252), Expect = 2.320e-25 Identity = 50/62 (80.65%), Postives = 50/62 (80.65%), Query Frame = 1
Query: 1 TRLKEHQKAVFFCKKENSALSEHTCLTNHTIGWDNSKIIITNRRYH*CLCLEALHINSAHAP 186
T LKEHQKA FFCKKEN ALSEHTCLTNHTI DNSKII TN YH LCLEA HIN AHAP
Sbjct: 125 THLKEHQKAAFFCKKENLALSEHTCLTNHTIEKDNSKIITTNPCYHQHLCLEAWHINFAHAP 186
BLAST of mRNA_H-canaliculatus_M_contigs75867.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6UR58_POCDA) HSP 1 Score: 93.6 bits (231), Expect = 6.480e-22 Identity = 44/56 (78.57%), Postives = 45/56 (80.36%), Query Frame = 1
Query: 1 TRLKEHQKAVFFCKKENSALSEHTCLTNHTIGWDNSKIIITNRRYH*CLCLEALHI 168
T LKEH+KAVFF KKENS SEHTCLTNHTIGWDNS I T RRYH LCLEA HI
Sbjct: 154 THLKEHKKAVFFSKKENSTSSEHTCLTNHTIGWDNSTTITTKRRYHQRLCLEAWHI 209
BLAST of mRNA_H-canaliculatus_M_contigs75867.1.1 vs.
Match: Ig-like (domain-containing protein n=1 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6ULI1_POCDA) HSP 1 Score: 88.2 bits (217), Expect = 1.350e-18 Identity = 40/44 (90.91%), Postives = 41/44 (93.18%), Query Frame = 1
Query: 1 TRLKEHQKAVFFCKKENSALSEHTCLTNHTIGWDNSKIIITNRR 132
TRLKEHQKAVF CKKENSALSEHTCLTNHTIGWDNSKII T R+
Sbjct: 327 TRLKEHQKAVFLCKKENSALSEHTCLTNHTIGWDNSKIITTKRQ 370
BLAST of mRNA_H-canaliculatus_M_contigs75867.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6TYB8_POCDA) HSP 1 Score: 73.6 bits (179), Expect = 1.440e-13 Identity = 33/35 (94.29%), Postives = 33/35 (94.29%), Query Frame = 1
Query: 1 TRLKEHQKAVFFCKKENSALSEHTCLTNHTIGWDN 105
TRLKE QKAVFFCKKENSALSEHTCLT HTIGWDN
Sbjct: 306 TRLKELQKAVFFCKKENSALSEHTCLTKHTIGWDN 340
BLAST of mRNA_H-canaliculatus_M_contigs75867.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6TL40_POCDA) HSP 1 Score: 65.1 bits (157), Expect = 1.120e-11 Identity = 30/32 (93.75%), Postives = 30/32 (93.75%), Query Frame = 1
Query: 1 TRLKEHQKAVFFCKKENSALSEHTCLTNHTIG 96
TRLKEHQKAVFF KKENSA SEHTCLTNHTIG
Sbjct: 95 TRLKEHQKAVFFSKKENSASSEHTCLTNHTIG 126
BLAST of mRNA_H-canaliculatus_M_contigs75867.1.1 vs.
Match: uncharacterized (protein LOC120347973 n=1 Tax=Styela clava TaxID=7725 RepID=UPI00193A372E) HSP 1 Score: 64.7 bits (156), Expect = 2.440e-10 Identity = 36/80 (45.00%), Postives = 44/80 (55.00%), Query Frame = 1
Query: 1 TRLKEHQKAVFFCKKENSALSEHTCLTNHTIGWDNSKIIITNRRYH*CLCLEALHINSAHAPLNRDDGGLLPDAYLHLVR 240
TR KEHQ+ V K E SALS+H T+H+I WDNS+I+ Y L LE+ HIN +N D L P Y L R
Sbjct: 539 TRRKEHQRDVKQKKFEKSALSKHALSTDHSIDWDNSRILEHEIHYRKRLFLESYHINKEKNSMNNKDTTLFPHVYKSLFR 618 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs75867.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90) Total hits: 14
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_M_contigs75867.1.1 >prot_H-canaliculatus_M_contigs75867.1.1 ID=prot_H-canaliculatus_M_contigs75867.1.1|Name=mRNA_H-canaliculatus_M_contigs75867.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=47bp TRLKEHQKAVFFCKKENSALSEHTCLTNHTIGWDNSKIIITNRRYH*back to top mRNA from alignment at H-canaliculatus_M_contigs75867:295..534- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_M_contigs75867.1.1 ID=mRNA_H-canaliculatus_M_contigs75867.1.1|Name=mRNA_H-canaliculatus_M_contigs75867.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=240bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75867:295..534- (Hapterophycus canaliculatus Oshoro7m male)back to top Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs75867:295..534- >mRNA_H-canaliculatus_M_contigs75867.1.1 ID=mRNA_H-canaliculatus_M_contigs75867.1.1|Name=mRNA_H-canaliculatus_M_contigs75867.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=141bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75867:295..534- (Hapterophycus canaliculatus Oshoro7m male)back to top |