mRNA_H-canaliculatus_M_contigs75777.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs75777.1.1
Unique NamemRNA_H-canaliculatus_M_contigs75777.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs75777.1.1 vs.
Match: Transporter (n=5 Tax=Sulfitobacter mediterraneus TaxID=83219 RepID=A0A061SSC3_9RHOB)

HSP 1 Score: 202 bits (514), Expect = 6.320e-60
Identity = 118/180 (65.56%), Postives = 142/180 (78.89%), Query Frame = 1
Query:    1 RALLRAADEGVAIAASALLPIIQWSAGAQRDFGRQLGATSSSTV--DVGTSNIALTASLLLYDSGSSAATIESSKETVLATRQTLVAIEQQVLLRAIEAFMGVRQASEFVALRQNNLRLLTQELRAANDRFEVGEVTRTDVALAQARLAQARSGLADAQADLLRAKAEYTNVVGHKPGRL 534
            RALLRAADE VAIA SAL P+++W+A A + FGR   A +   V  D  T++++L A +L+YD+G+    +E++KETVLATR  LV +EQQVLLRAI A+MGV +ASEFVALR NN+RLLTQELRAA DRFEVGEVTRTDVALA+A+LAQARSGLA AQ D LRA  EY N VG KPG+L
Sbjct:   52 RALLRAADEDVAIAGSALKPVVRWTAAATQSFGRVRTAATGVAVANDDLTASLSLVAEMLIYDAGARKFRVEATKETVLATRDALVNVEQQVLLRAISAYMGVLEASEFVALRTNNVRLLTQELRAARDRFEVGEVTRTDVALAEAQLAQARSGLAGAQGDRLRAIEEYRNAVGRKPGQL 231          
BLAST of mRNA_H-canaliculatus_M_contigs75777.1.1 vs.
Match: TolC (family outer membrane protein n=1 Tax=Sulfitobacter sabulilitoris TaxID=2562655 RepID=A0A5S3PLD5_9RHOB)

HSP 1 Score: 202 bits (513), Expect = 8.900e-60
Identity = 119/181 (65.75%), Postives = 144/181 (79.56%), Query Frame = 1
Query:    1 RALLRAADEGVAIAASALLPIIQWSAGAQRDFGRQLGA-TSSSTVDVGTSNIA--LTASLLLYDSGSSAATIESSKETVLATRQTLVAIEQQVLLRAIEAFMGVRQASEFVALRQNNLRLLTQELRAANDRFEVGEVTRTDVALAQARLAQARSGLADAQADLLRAKAEYTNVVGHKPGRL 534
            RALLRAADE VA A SAL PI+ WS    R FG  LG+ T  +   +G ++++  L A LLL+DSG+++  I  +KE+VLATRQTL++IEQQVLLRA+ AFM VR ASEFVALRQNNLRLLT+ELRAA DRFEVGEVTRTDVALA+AR A+ARSGLA A+ +LL+A+ EY NVVG +PGRL
Sbjct:   51 RALLRAADEDVATAVSALRPILSWSGDVTRTFGNSLGSNTFGAKRSIGNTSVSAGLLAQLLLWDSGAASLGIGVAKESVLATRQTLISIEQQVLLRAVSAFMSVRSASEFVALRQNNLRLLTEELRAARDRFEVGEVTRTDVALAEARQAEARSGLATARGNLLQAQEEYKNVVGRRPGRL 231          
BLAST of mRNA_H-canaliculatus_M_contigs75777.1.1 vs.
Match: Transporter (n=1 Tax=Sulfitobacter sp. TaxID=1903071 RepID=A0A3D2FCJ5_9RHOB)

HSP 1 Score: 200 bits (509), Expect = 2.670e-59
Identity = 115/178 (64.61%), Postives = 139/178 (78.09%), Query Frame = 1
Query:    1 RALLRAADEGVAIAASALLPIIQWSAGAQRDFGRQLGATSSSTVDVGTSNIALTASLLLYDSGSSAATIESSKETVLATRQTLVAIEQQVLLRAIEAFMGVRQASEFVALRQNNLRLLTQELRAANDRFEVGEVTRTDVALAQARLAQARSGLADAQADLLRAKAEYTNVVGHKPGRL 534
            RALLRAADE VA A++ALLPI+ WSA  QR F  Q  A +S+        I + A LLLYD G S A+IE+++E+V ATR  L++IEQQ++LRA+ A+  VR  S+FVALRQNNLRLLTQELRAA DRF+VGEVTRTDVALA+ARLAQARSGLA+AQ DLL A+AEY NV+GH+P  L
Sbjct:   48 RALLRAADEDVASASAALLPIVNWSAQTQRTFSSQERARNSNAT------IGVNAELLLYDFGGSDASIEAARESVFATRSQLLSIEQQIMLRAVTAYFNVRSTSKFVALRQNNLRLLTQELRAAKDRFDVGEVTRTDVALAEARLAQARSGLANAQGDLLTARAEYANVIGHQPRNL 219          
BLAST of mRNA_H-canaliculatus_M_contigs75777.1.1 vs.
Match: Transporter (n=1 Tax=Sulfitobacter sp. SK011 TaxID=1389004 RepID=A0A345Q8K9_9RHOB)

HSP 1 Score: 200 bits (509), Expect = 3.740e-59
Identity = 121/180 (67.22%), Postives = 140/180 (77.78%), Query Frame = 1
Query:    1 RALLRAADEGVAIAASALLPIIQWSAGAQRDFGRQL--GATSSSTVDVGTSNIALTASLLLYDSGSSAATIESSKETVLATRQTLVAIEQQVLLRAIEAFMGVRQASEFVALRQNNLRLLTQELRAANDRFEVGEVTRTDVALAQARLAQARSGLADAQADLLRAKAEYTNVVGHKPGRL 534
            RALLRAADE VAIA S L P++ WSA   ++FGR    GA  SS+VD  ++ I L   LLL+D G+S   IE++KETVLATR TL+ IEQ VLLRA+ A+MGV +ASEFVALR NNLRLLTQELRAA DRF+VGEVTRTDVALA+A+LAQARSGLA A+ D LRA  EY N VG KPGRL
Sbjct:   55 RALLRAADEDVAIAGSTLKPVLSWSADLTQNFGRTRAGGAGFSSSVDNLSATIGLIGQLLLFDFGASQYRIEAAKETVLATRGTLLDIEQIVLLRAVRAYMGVIEASEFVALRNNNLRLLTQELRAARDRFDVGEVTRTDVALAEAQLAQARSGLAGAEGDYLRAIEEYRNAVGRKPGRL 234          
BLAST of mRNA_H-canaliculatus_M_contigs75777.1.1 vs.
Match: TolC (family outer membrane protein n=1 Tax=Sulfitobacter maritimus TaxID=2741719 RepID=UPI0015820684)

HSP 1 Score: 199 bits (505), Expect = 1.370e-58
Identity = 117/180 (65.00%), Postives = 140/180 (77.78%), Query Frame = 1
Query:    1 RALLRAADEGVAIAASALLPIIQWSAGAQRDFG--RQLGATSSSTVDVGTSNIALTASLLLYDSGSSAATIESSKETVLATRQTLVAIEQQVLLRAIEAFMGVRQASEFVALRQNNLRLLTQELRAANDRFEVGEVTRTDVALAQARLAQARSGLADAQADLLRAKAEYTNVVGHKPGRL 534
            RALLRAADE VA A +AL P+++W+ G  + FG  R  G   + TVD  +++I+L   +LLYD GSS   IE++KE VLATRQTL+ +EQQVLLRA+ A+MGV +ASE VALR NNLRLLTQELRAA DRFEVGEVTRTDVALA+A+LA ARSGLA A+  LLRA  EY N VGHKPG+L
Sbjct:   52 RALLRAADEDVAAAKAALRPVLRWAGGLTQSFGTSRSSGLQPAQTVDDLSASISLIGEMLLYDFGSSEYRIEAAKEAVLATRQTLLNLEQQVLLRAVTAYMGVIEASETVALRNNNLRLLTQELRAARDRFEVGEVTRTDVALAEAQLANARSGLAGAEGILLRAVEEYRNAVGHKPGKL 231          
BLAST of mRNA_H-canaliculatus_M_contigs75777.1.1 vs.
Match: TolC (family outer membrane protein n=1 Tax=Sulfitobacter noctilucae TaxID=1342302 RepID=UPI000468CD76)

HSP 1 Score: 197 bits (502), Expect = 3.830e-58
Identity = 114/180 (63.33%), Postives = 139/180 (77.22%), Query Frame = 1
Query:    1 RALLRAADEGVAIAASALLPIIQWSAGAQRDFGRQLGATSSSTVDVG--TSNIALTASLLLYDSGSSAATIESSKETVLATRQTLVAIEQQVLLRAIEAFMGVRQASEFVALRQNNLRLLTQELRAANDRFEVGEVTRTDVALAQARLAQARSGLADAQADLLRAKAEYTNVVGHKPGRL 534
            RALLRAADE VA A S L P+++WSA   + +GR    T+ + +D    T+ I L A L+LYD G+    +E++KETVLATR+ L+ +EQQ+LLRA+ A+MGV +ASEFVALRQNN+RLLTQE RAA DRFEVGEVTRTDVALAQA+LAQARSGLA AQ DL+ A  EY N+VG KPGRL
Sbjct:   52 RALLRAADEDVATAVSTLKPVLRWSASLTQSYGRARTTTNPNPIDTDDLTAAINLAADLVLYDFGARQFRVEAAKETVLATREALLDLEQQILLRAVSAYMGVIEASEFVALRQNNVRLLTQEQRAATDRFEVGEVTRTDVALAQAQLAQARSGLAAAQGDLVAAIEEYRNIVGRKPGRL 231          
BLAST of mRNA_H-canaliculatus_M_contigs75777.1.1 vs.
Match: Outer (membrane efflux protein BepC n=1 Tax=Nymphon striatum TaxID=424472 RepID=A0A8J4YP13_9CHEL)

HSP 1 Score: 196 bits (498), Expect = 8.020e-58
Identity = 115/180 (63.89%), Postives = 138/180 (76.67%), Query Frame = 1
Query:    1 RALLRAADEGVAIAASALLPIIQWSAGAQRDFGRQLGATSSSTV--DVGTSNIALTASLLLYDSGSSAATIESSKETVLATRQTLVAIEQQVLLRAIEAFMGVRQASEFVALRQNNLRLLTQELRAANDRFEVGEVTRTDVALAQARLAQARSGLADAQADLLRAKAEYTNVVGHKPGRL 534
            RALLRAADE VA A S L P+++WS    + FGR   ++S  T+  D  T+ I+L   L+LYD GS    +E++KE+VLATR+ LV IEQQVL RA+ A+MGV +A+EFVALRQNN+RLLTQELRAA DRFEVGEVTRTDVALAQA+LAQARSGLA A  +LL A  EY NV+G KPGRL
Sbjct:   52 RALLRAADEDVASAVSTLKPVLRWSTSLTQTFGRVRASSSPVTINNDDLTAAISLVGELVLYDFGSRQLRVEAAKESVLATREALVDIEQQVLFRAVRAYMGVIEATEFVALRQNNVRLLTQELRAAQDRFEVGEVTRTDVALAQAQLAQARSGLAQADGNLLSATEEYRNVIGRKPGRL 231          
BLAST of mRNA_H-canaliculatus_M_contigs75777.1.1 vs.
Match: TolC (family outer membrane protein n=1 Tax=Sulfitobacter sp. JK7-1 TaxID=2829501 RepID=UPI001BAEB397)

HSP 1 Score: 196 bits (499), Expect = 8.950e-58
Identity = 112/180 (62.22%), Postives = 143/180 (79.44%), Query Frame = 1
Query:    1 RALLRAADEGVAIAASALLPIIQWSAGAQRDFGRQLGATSSSTVDVGTSNIA--LTASLLLYDSGSSAATIESSKETVLATRQTLVAIEQQVLLRAIEAFMGVRQASEFVALRQNNLRLLTQELRAANDRFEVGEVTRTDVALAQARLAQARSGLADAQADLLRAKAEYTNVVGHKPGRL 534
            RALLRAADE VA+A +AL P+++W+A AQ+ FGR  G+T +   D  +  ++  L   LLLYD G++A  +E++KETVLATR+TL+ IEQQVLLRA++A+MGV +A+EFVALRQNNLR+LTQELRAA +RFEVGEVTRTDVALA+A+LAQARSGLA A+ +   A  EY N+VG  PG L
Sbjct:   44 RALLRAADEDVAVAGTALEPVLRWTASAQQQFGRARGSTLAGVQDTDSLTLSGSLIGELLLYDFGATALRVEAAKETVLATRETLLGIEQQVLLRAVQAYMGVIEANEFVALRQNNLRVLTQELRAARNRFEVGEVTRTDVALAEAQLAQARSGLATAEGNRQIAIEEYRNIVGRMPGAL 223          
BLAST of mRNA_H-canaliculatus_M_contigs75777.1.1 vs.
Match: TolC (family outer membrane protein n=1 Tax=Sulfitobacter aestuariivivens TaxID=2766981 RepID=UPI00168AA371)

HSP 1 Score: 196 bits (498), Expect = 1.230e-57
Identity = 119/180 (66.11%), Postives = 139/180 (77.22%), Query Frame = 1
Query:    1 RALLRAADEGVAIAASALLPIIQWSAGAQRDFG-RQLGATSSSTVDVGTS-NIALTASLLLYDSGSSAATIESSKETVLATRQTLVAIEQQVLLRAIEAFMGVRQASEFVALRQNNLRLLTQELRAANDRFEVGEVTRTDVALAQARLAQARSGLADAQADLLRAKAEYTNVVGHKPGRL 534
            RALLRAADE VA A +AL P+++WS    R FG RQ+  +  S+   GTS ++ L A LLLYD G+S   IE++KETVLATR TL+ IEQQVL RA+ A+MGV +ASE VALR NNLRLLTQELRAA DRFEVGEVTRTDVALA+A+LAQARSGLA AQ  LL+A  E+ NVVG  PGRL
Sbjct:   43 RALLRAADEDVAAAQAALKPVLRWSGSVTRTFGTRQVSGSGFSSSVNGTSVDLGLIAELLLYDGGNSKLQIEATKETVLATRDTLINIEQQVLFRAVAAYMGVIEASESVALRNNNLRLLTQELRAARDRFEVGEVTRTDVALAEAQLAQARSGLAGAQGALLQATEEFRNVVGRAPGRL 222          
BLAST of mRNA_H-canaliculatus_M_contigs75777.1.1 vs.
Match: Type (I secretion outer membrane protein, TolC family n=1 Tax=Roseobacter sp. (strain GAI101) TaxID=391589 RepID=B7RNT8_ROSS0)

HSP 1 Score: 196 bits (497), Expect = 2.360e-57
Identity = 113/185 (61.08%), Postives = 145/185 (78.38%), Query Frame = 1
Query:    1 RALLRAADEGVAIAASALLPIIQWSAGAQRDFGRQLGATSS-------STVDVGTSNIALTASLLLYDSGSSAATIESSKETVLATRQTLVAIEQQVLLRAIEAFMGVRQASEFVALRQNNLRLLTQELRAANDRFEVGEVTRTDVALAQARLAQARSGLADAQADLLRAKAEYTNVVGHKPGRL 534
            RA+LRAADE VAIA SAL P+++W+    ++F R +   S+       ++ D  T++I L ASLL+YD G+S  ++E++KETVLATR+TLV+IEQQ+LLRA++A+MGV QA + V+LR+NN+RLLTQELRAA DRFEVGEVTRTDVALA+A+LAQARSGLA AQ DL+ AKA Y   VG  PGRL
Sbjct:   52 RAVLRAADEDVAIAKSALKPVVRWTGDLTQNFNRTISGGSAFALPGTRTSTDQLTTSINLIASLLVYDFGASRFSVEAAKETVLATRETLVSIEQQILLRAVDAYMGVIQAEQIVSLRENNMRLLTQELRAARDRFEVGEVTRTDVALAEAQLAQARSGLAGAQGDLISAKAYYKVAVGRAPGRL 236          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs75777.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Transporter6.320e-6065.56n=5 Tax=Sulfitobacter mediterraneus TaxID=83219 Re... [more]
TolC8.900e-6065.75family outer membrane protein n=1 Tax=Sulfitobacte... [more]
Transporter2.670e-5964.61n=1 Tax=Sulfitobacter sp. TaxID=1903071 RepID=A0A3... [more]
Transporter3.740e-5967.22n=1 Tax=Sulfitobacter sp. SK011 TaxID=1389004 RepI... [more]
TolC1.370e-5865.00family outer membrane protein n=1 Tax=Sulfitobacte... [more]
TolC3.830e-5863.33family outer membrane protein n=1 Tax=Sulfitobacte... [more]
Outer8.020e-5863.89membrane efflux protein BepC n=1 Tax=Nymphon stria... [more]
TolC8.950e-5862.22family outer membrane protein n=1 Tax=Sulfitobacte... [more]
TolC1.230e-5766.11family outer membrane protein n=1 Tax=Sulfitobacte... [more]
Type2.360e-5761.08I secretion outer membrane protein, TolC family n=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs75777contigH-canaliculatus_M_contigs75777:2..535 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog83219.PM02_13905
Preferred namebepC
PFAMsOEP
Model size534
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K12340,ko:K12535
KEGG TC1.B.17,2.A.6.2
KEGG Pathwayko01501,ko01503,ko02020,ko03070,ko04626,ko05133,map01501,map01503,map02020,map03070,map04626,map05133
KEGG ModuleM00325,M00326,M00327,M00339,M00571,M00575,M00646,M00647,M00696,M00697,M00709,M00720,M00821
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.04e-60
EggNOG OGsCOG1538@1|root,COG1538@2|Bacteria,1MWCJ@1224|Proteobacteria,2TR3S@28211|Alphaproteobacteria,3ZV3T@60136|Sulfitobacter
DescriptionOuter membrane efflux protein
Cds size534
COG categoryMU
BRITEko00000,ko00001,ko00002,ko01504,ko02000,ko02044
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854095.0536745-CDS-H-canaliculatus_M_contigs75777:1..5351696854095.0536745-CDS-H-canaliculatus_M_contigs75777:1..535Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs75777 2..535 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs75777.1.1prot_H-canaliculatus_M_contigs75777.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs75777 2..535 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs75777.1.1

>prot_H-canaliculatus_M_contigs75777.1.1 ID=prot_H-canaliculatus_M_contigs75777.1.1|Name=mRNA_H-canaliculatus_M_contigs75777.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=178bp
RALLRAADEGVAIAASALLPIIQWSAGAQRDFGRQLGATSSSTVDVGTSN
IALTASLLLYDSGSSAATIESSKETVLATRQTLVAIEQQVLLRAIEAFMG
VRQASEFVALRQNNLRLLTQELRAANDRFEVGEVTRTDVALAQARLAQAR
SGLADAQADLLRAKAEYTNVVGHKPGRL
back to top

mRNA from alignment at H-canaliculatus_M_contigs75777:2..535+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs75777.1.1 ID=mRNA_H-canaliculatus_M_contigs75777.1.1|Name=mRNA_H-canaliculatus_M_contigs75777.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=534bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75777:2..535+ (Hapterophycus canaliculatus Oshoro7m male)
CGCGCATTGCTGCGCGCCGCAGACGAAGGTGTCGCAATTGCTGCATCCGC TCTGTTGCCGATCATCCAGTGGTCCGCAGGGGCGCAACGGGATTTCGGGC GCCAGCTTGGCGCAACGTCCAGTTCGACGGTTGACGTCGGAACGTCGAAT ATTGCCCTGACCGCCAGCCTGCTGCTTTACGATTCCGGATCGTCAGCGGC CACAATTGAATCAAGCAAAGAGACAGTTCTTGCGACCCGCCAGACGCTTG TTGCGATTGAACAACAAGTGCTGCTGCGCGCGATCGAGGCGTTCATGGGG GTGCGCCAAGCCTCTGAATTTGTTGCGTTGCGTCAAAACAACCTGCGTCT GCTGACCCAAGAGTTGCGGGCCGCAAACGACCGGTTTGAAGTGGGCGAAG TCACGCGAACAGACGTCGCACTGGCCCAAGCCCGTTTGGCGCAAGCGCGC AGTGGTTTGGCCGATGCACAAGCGGATCTGTTGCGTGCGAAGGCGGAATA CACCAACGTTGTCGGGCATAAGCCTGGCCGGTTG
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs75777:2..535+

>mRNA_H-canaliculatus_M_contigs75777.1.1 ID=mRNA_H-canaliculatus_M_contigs75777.1.1|Name=mRNA_H-canaliculatus_M_contigs75777.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=534bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75777:2..535+ (Hapterophycus canaliculatus Oshoro7m male)
CGCGCATTGCTGCGCGCCGCAGACGAAGGTGTCGCAATTGCTGCATCCGC
TCTGTTGCCGATCATCCAGTGGTCCGCAGGGGCGCAACGGGATTTCGGGC
GCCAGCTTGGCGCAACGTCCAGTTCGACGGTTGACGTCGGAACGTCGAAT
ATTGCCCTGACCGCCAGCCTGCTGCTTTACGATTCCGGATCGTCAGCGGC
CACAATTGAATCAAGCAAAGAGACAGTTCTTGCGACCCGCCAGACGCTTG
TTGCGATTGAACAACAAGTGCTGCTGCGCGCGATCGAGGCGTTCATGGGG
GTGCGCCAAGCCTCTGAATTTGTTGCGTTGCGTCAAAACAACCTGCGTCT
GCTGACCCAAGAGTTGCGGGCCGCAAACGACCGGTTTGAAGTGGGCGAAG
TCACGCGAACAGACGTCGCACTGGCCCAAGCCCGTTTGGCGCAAGCGCGC
AGTGGTTTGGCCGATGCACAAGCGGATCTGTTGCGTGCGAAGGCGGAATA
CACCAACGTTGTCGGGCATAAGCCTGGCCGGTTG
back to top