mRNA_H-canaliculatus_M_contigs75720.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs75720.1.1
Unique NamemRNA_H-canaliculatus_M_contigs75720.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs75720.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Jannaschia sp. (strain CCS1) TaxID=290400 RepID=Q28LR8_JANSC)

HSP 1 Score: 253 bits (647), Expect = 5.330e-84
Identity = 121/131 (92.37%), Postives = 126/131 (96.18%), Query Frame = 1
Query:    1 YLYAFDEDQNILLVEPIRVDIGGGDIGAISAGTVVASHYVFFDSLNGTHYGYVDFDAPILGVAALRESMAATDFLANTSVTYLSLELRGLERGDQVWIDEDDPFRLWVYWAGSSPGDYIRVFTSRSAAAMM 393
            +LYAFDEDQNILLVEPIRVDIGGGD+GAI AG VVASHYVFFDS+NGT YGYVDFDAPILGVAALRE+MAATDFLANT VTYLSLELRGLERGDQVWID DDPFRLWVYWAGSSPGDYIRVFT+RSAAAMM
Sbjct:   86 HLYAFDEDQNILLVEPIRVDIGGGDLGAIPAGNVVASHYVFFDSINGTQYGYVDFDAPILGVAALRETMAATDFLANTDVTYLSLELRGLERGDQVWIDADDPFRLWVYWAGSSPGDYIRVFTARSAAAMM 216          
BLAST of mRNA_H-canaliculatus_M_contigs75720.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Jannaschia sp. EhC01 TaxID=1849359 RepID=A0A1B6YPG2_9RHOB)

HSP 1 Score: 251 bits (642), Expect = 1.470e-83
Identity = 120/130 (92.31%), Postives = 126/130 (96.92%), Query Frame = 1
Query:    4 LYAFDEDQNILLVEPIRVDIGGGDIGAISAGTVVASHYVFFDSLNGTHYGYVDFDAPILGVAALRESMAATDFLANTSVTYLSLELRGLERGDQVWIDEDDPFRLWVYWAGSSPGDYIRVFTSRSAAAMM 393
            LYAFDEDQNILLVEPIRVDIGGGD+GAI AGTVVASHYVFFDSLNGT YGYVDFDAPILG+AA +E+MAATDFLANT+VTYLSLELRGLERGDQVWID DDPFRLWVYWAGSSPGDYIRVFT+RSAAAMM
Sbjct:   65 LYAFDEDQNILLVEPIRVDIGGGDLGAIPAGTVVASHYVFFDSLNGTQYGYVDFDAPILGIAAQQETMAATDFLANTAVTYLSLELRGLERGDQVWIDADDPFRLWVYWAGSSPGDYIRVFTARSAAAMM 194          
BLAST of mRNA_H-canaliculatus_M_contigs75720.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Roseibacterium sp. TaxID=2003362 RepID=A0A7C7VF36_9RHOB)

HSP 1 Score: 242 bits (618), Expect = 5.100e-80
Identity = 112/129 (86.82%), Postives = 124/129 (96.12%), Query Frame = 1
Query:    1 YLYAFDEDQNILLVEPIRVDIGGGDIGAISAGTVVASHYVFFDSLNGTHYGYVDFDAPILGVAALRESMAATDFLANTSVTYLSLELRGLERGDQVWIDEDDPFRLWVYWAGSSPGDYIRVFTSRSAAA 387
            +LYAFDEDQNILL+EPIRVDIGGGD+GAI +GT+VASHYVFFDS+NGTHYGYVDFDAPILG+AA +ESMAATDFLANTSVTYLSLELRGLERGD VWIDE DP RLWVYWAGSSPGDYIRVFT++S++A
Sbjct:   55 HLYAFDEDQNILLIEPIRVDIGGGDLGAIVSGTIVASHYVFFDSINGTHYGYVDFDAPILGIAAFQESMAATDFLANTSVTYLSLELRGLERGDHVWIDEADPHRLWVYWAGSSPGDYIRVFTAQSSSA 183          
BLAST of mRNA_H-canaliculatus_M_contigs75720.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Dinoroseobacter shibae (strain DSM 16493 / NCIMB 14021 / DFL 12) TaxID=398580 RepID=A8LII2_DINSH)

HSP 1 Score: 213 bits (542), Expect = 1.780e-68
Identity = 103/131 (78.63%), Postives = 112/131 (85.50%), Query Frame = 1
Query:    1 YLYAFDEDQNILLVEPIRVDIGGGDIGAISAGTVVASHYVFFDSLNGTHYGYVDFDAPILGVAALRESMAATDFLANTSVTYLSLELRGLERGDQVWIDEDDPFRLWVYWAGSSPGDYIRVFTSRSAAAMM 393
            +LYAFDEDQNI L  PIRVDIGG D G I AG VVASHYVFFDS++G  YGYV+FDAPILG+AA   +M ATDFLANT VTYLS +LRGLERGD+VWID D+PFRLWVYWAGSSPGDYIRVFT RS AAMM
Sbjct:   55 HLYAFDEDQNIALAAPIRVDIGGQD-GVIPAGQVVASHYVFFDSIDGVQYGYVEFDAPILGIAAQPGTMDATDFLANTDVTYLSTDLRGLERGDEVWIDPDNPFRLWVYWAGSSPGDYIRVFTERSPAAMM 184          
BLAST of mRNA_H-canaliculatus_M_contigs75720.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Labrenzia sp. THAF82 TaxID=2587861 RepID=A0A5P9CZV3_9HYPH)

HSP 1 Score: 208 bits (530), Expect = 1.230e-66
Identity = 101/131 (77.10%), Postives = 110/131 (83.97%), Query Frame = 1
Query:    1 YLYAFDEDQNILLVEPIRVDIGGGDIGAISAGTVVASHYVFFDSLNGTHYGYVDFDAPILGVAALRESMAATDFLANTSVTYLSLELRGLERGDQVWIDEDDPFRLWVYWAGSSPGDYIRVFTSRSAAAMM 393
            +LYAFDEDQNILL EPIRVDIGG D G I  GT VASHYVFFDSL+G H GYVDFDAPILG+AAL +++ ATDFLAN SV Y+S +LRGLE GD VWID DDPFRLWV WAGSSPGDYIRVFT +S  AMM
Sbjct:   56 HLYAFDEDQNILLSEPIRVDIGG-DRGMIPQGTTVASHYVFFDSLSGVHEGYVDFDAPILGIAALPDTLDATDFLANNSVNYISTDLRGLEPGDYVWIDPDDPFRLWVLWAGSSPGDYIRVFTEKSLGAMM 185          
BLAST of mRNA_H-canaliculatus_M_contigs75720.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Roseibium album TaxID=311410 RepID=A0A0M6Z840_9HYPH)

HSP 1 Score: 208 bits (530), Expect = 1.230e-66
Identity = 98/130 (75.38%), Postives = 109/130 (83.85%), Query Frame = 1
Query:    4 LYAFDEDQNILLVEPIRVDIGGGDIGAISAGTVVASHYVFFDSLNGTHYGYVDFDAPILGVAALRESMAATDFLANTSVTYLSLELRGLERGDQVWIDEDDPFRLWVYWAGSSPGDYIRVFTSRSAAAMM 393
            LYAFDEDQNILL EPIRVD GG D G I+ G  VASHYVFFDSL G HYGYVDFDAP+LG+AA +++MAATDFLAN SV Y+S ELRGLE GD+VW+D  DP RLWV+WAGSSPGDYIRVFT +S  AMM
Sbjct:   57 LYAFDEDQNILLTEPIRVDFGG-DNGVIAQGETVASHYVFFDSLAGVHYGYVDFDAPVLGIAAFQDTMAATDFLANNSVNYISTELRGLEPGDRVWVDGQDPHRLWVFWAGSSPGDYIRVFTEKSLGAMM 185          
BLAST of mRNA_H-canaliculatus_M_contigs75720.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Labrenzia sp. PHM005 TaxID=2590016 RepID=A0A4Y6RNX7_9HYPH)

HSP 1 Score: 206 bits (523), Expect = 1.430e-65
Identity = 100/131 (76.34%), Postives = 109/131 (83.21%), Query Frame = 1
Query:    1 YLYAFDEDQNILLVEPIRVDIGGGDIGAISAGTVVASHYVFFDSLNGTHYGYVDFDAPILGVAALRESMAATDFLANTSVTYLSLELRGLERGDQVWIDEDDPFRLWVYWAGSSPGDYIRVFTSRSAAAMM 393
            +LYAFDEDQNILL EP+RVDIGG D G I  G VVASHYVFFDSL G H GYVDFDAPILG+AAL  ++ ATDFLANTSV Y+S +LRGLE GD VW+D  DPFRLWV+WAGSSPGDYIRVFT RS  AMM
Sbjct:   56 HLYAFDEDQNILLSEPLRVDIGG-DRGIIPQGKVVASHYVFFDSLAGIHEGYVDFDAPILGIAALPATLDATDFLANTSVNYISTDLRGLEPGDYVWVDPKDPFRLWVFWAGSSPGDYIRVFTERSPGAMM 185          
BLAST of mRNA_H-canaliculatus_M_contigs75720.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Amylibacter sp. SFDW26 TaxID=2652722 RepID=A0A6I1E9G6_9RHOB)

HSP 1 Score: 205 bits (522), Expect = 1.620e-65
Identity = 98/129 (75.97%), Postives = 108/129 (83.72%), Query Frame = 1
Query:    4 LYAFDEDQNILLVEPIRVDIGGGDIGAISAGTVVASHYVFFDSLNGTHYGYVDFDAPILGVAALRESMAATDFLANTSVTYLSLELRGLERGDQVWIDEDDPFRLWVYWAGSSPGDYIRVFTSRSAAAM 390
            LYAFDEDQNI+L EPI VDIGG   G I  G  +ASHY+FFDSL+G HYGYVDFDA ILGVAA + +MAATDFLANTSV Y+S ELRGLE GD VWIDE+DP RLWVYWAGSSPGDYIRVFT +SA A+
Sbjct:   50 LYAFDEDQNIILSEPISVDIGGNQ-GVIHQGETIASHYIFFDSLSGIHYGYVDFDAKILGVAAFQGTMAATDFLANTSVNYISTELRGLEEGDYVWIDENDPQRLWVYWAGSSPGDYIRVFTKKSAGAL 177          
BLAST of mRNA_H-canaliculatus_M_contigs75720.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Tateyamaria omphalii TaxID=299262 RepID=UPI001675004C)

HSP 1 Score: 205 bits (521), Expect = 2.890e-65
Identity = 100/130 (76.92%), Postives = 110/130 (84.62%), Query Frame = 1
Query:    4 LYAFDEDQNILLVEPIRVDIGGGDIGAISAGTVVASHYVFFDSLNGTHYGYVDFDAPILGVAALRESMAATDFLANTSVTYLSLELRGLERGDQVWIDEDDPFRLWVYWAGSSPGDYIRVFTSRSAAAMM 393
            LY FDEDQNI LVEPIRVDIG  + G I AGT+VASHYVFFDSL+G H GYVDFDAPILGVAA + +MAATDFLANT VTYLS ELRGLE+GD VWIDE+ P RLWVYWAGSSPGDY+RVFT  S  A++
Sbjct:   56 LYGFDEDQNITLVEPIRVDIGN-EQGWIPAGTIVASHYVFFDSLSGIHTGYVDFDAPILGVAAFQGTMAATDFLANTGVTYLSTELRGLEQGDYVWIDENLPSRLWVYWAGSSPGDYVRVFTEESKGALL 184          
BLAST of mRNA_H-canaliculatus_M_contigs75720.1.1 vs.
Match: hypothetical (protein n=1 Tax=Shimia sp. WX04 TaxID=2582893 RepID=UPI0011BF8791)

HSP 1 Score: 201 bits (510), Expect = 1.240e-63
Identity = 98/131 (74.81%), Postives = 110/131 (83.97%), Query Frame = 1
Query:    1 YLYAFDEDQNILLVEPIRVDIGGGDIGAISAGTVVASHYVFFDSLNGTHYGYVDFDAPILGVAALRESMAATDFLANTSVTYLSLELRGLERGDQVWIDEDDPFRLWVYWAGSSPGDYIRVFTSRSAAAMM 393
            +LYAFDEDQNI L+EP+R+DIG  + G I AGTVVASHYVFFDSL+G H G+VDF APILGVAA +++MAATDFLANT VT +S  LRGLERGD VWIDEDDP RLWV WAGSSPGDYIRVFT +S A  M
Sbjct:   53 HLYAFDEDQNITLIEPLRIDIGN-EGGMIPAGTVVASHYVFFDSLDGFHMGHVDFHAPILGVAAQQDTMAATDFLANTQVTCISTGLRGLERGDLVWIDEDDPHRLWVSWAGSSPGDYIRVFTEKSPALFM 182          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs75720.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized5.330e-8492.37protein n=2 Tax=Jannaschia sp. (strain CCS1) TaxID... [more]
Uncharacterized1.470e-8392.31protein n=2 Tax=Jannaschia sp. EhC01 TaxID=1849359... [more]
Uncharacterized5.100e-8086.82protein n=1 Tax=Roseibacterium sp. TaxID=2003362 R... [more]
Uncharacterized1.780e-6878.63protein n=1 Tax=Dinoroseobacter shibae (strain DSM... [more]
Uncharacterized1.230e-6677.10protein n=1 Tax=Labrenzia sp. THAF82 TaxID=2587861... [more]
Uncharacterized1.230e-6675.38protein n=1 Tax=Roseibium album TaxID=311410 RepID... [more]
Uncharacterized1.430e-6576.34protein n=1 Tax=Labrenzia sp. PHM005 TaxID=2590016... [more]
Uncharacterized1.620e-6575.97protein n=2 Tax=Amylibacter sp. SFDW26 TaxID=26527... [more]
Uncharacterized2.890e-6576.92protein n=2 Tax=Tateyamaria omphalii TaxID=299262 ... [more]
hypothetical1.240e-6374.81protein n=1 Tax=Shimia sp. WX04 TaxID=2582893 RepI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs75720contigH-canaliculatus_M_contigs75720:2..397 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog290400.Jann_3427
Model size396
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.74e-85
EggNOG OGs2DPFX@1|root,331WC@2|Bacteria,1NEA1@1224|Proteobacteria,2UIWR@28211|Alphaproteobacteria
Cds size396
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854094.3892686-CDS-H-canaliculatus_M_contigs75720:1..3971696854094.3892686-CDS-H-canaliculatus_M_contigs75720:1..397Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs75720 2..397 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs75720.1.1prot_H-canaliculatus_M_contigs75720.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs75720 2..397 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs75720.1.1

>prot_H-canaliculatus_M_contigs75720.1.1 ID=prot_H-canaliculatus_M_contigs75720.1.1|Name=mRNA_H-canaliculatus_M_contigs75720.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=132bp
YLYAFDEDQNILLVEPIRVDIGGGDIGAISAGTVVASHYVFFDSLNGTHY
GYVDFDAPILGVAALRESMAATDFLANTSVTYLSLELRGLERGDQVWIDE
DDPFRLWVYWAGSSPGDYIRVFTSRSAAAMM*
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mRNA from alignment at H-canaliculatus_M_contigs75720:2..397+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs75720.1.1 ID=mRNA_H-canaliculatus_M_contigs75720.1.1|Name=mRNA_H-canaliculatus_M_contigs75720.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=396bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75720:2..397+ (Hapterophycus canaliculatus Oshoro7m male)
TATCTCTATGCCTTTGATGAAGATCAGAATATTCTGCTGGTAGAACCCAT TCGCGTGGACATTGGTGGCGGCGACATCGGCGCCATTTCCGCAGGCACCG TTGTGGCCAGCCACTACGTGTTCTTCGACAGCCTCAATGGCACGCATTAT GGCTATGTCGATTTCGACGCGCCGATCCTTGGCGTGGCGGCGCTGCGGGA AAGTATGGCGGCGACGGACTTTCTGGCCAACACCTCGGTCACCTACCTGA GCCTTGAGCTGCGCGGGTTGGAGCGTGGCGATCAGGTGTGGATCGACGAG GATGACCCGTTTCGGCTGTGGGTCTATTGGGCCGGGTCCTCTCCGGGGGA CTACATTCGCGTGTTCACGTCACGCTCGGCGGCGGCGATGATGTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs75720:2..397+

>mRNA_H-canaliculatus_M_contigs75720.1.1 ID=mRNA_H-canaliculatus_M_contigs75720.1.1|Name=mRNA_H-canaliculatus_M_contigs75720.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=396bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75720:2..397+ (Hapterophycus canaliculatus Oshoro7m male)
TATCTCTATGCCTTTGATGAAGATCAGAATATTCTGCTGGTAGAACCCAT
TCGCGTGGACATTGGTGGCGGCGACATCGGCGCCATTTCCGCAGGCACCG
TTGTGGCCAGCCACTACGTGTTCTTCGACAGCCTCAATGGCACGCATTAT
GGCTATGTCGATTTCGACGCGCCGATCCTTGGCGTGGCGGCGCTGCGGGA
AAGTATGGCGGCGACGGACTTTCTGGCCAACACCTCGGTCACCTACCTGA
GCCTTGAGCTGCGCGGGTTGGAGCGTGGCGATCAGGTGTGGATCGACGAG
GATGACCCGTTTCGGCTGTGGGTCTATTGGGCCGGGTCCTCTCCGGGGGA
CTACATTCGCGTGTTCACGTCACGCTCGGCGGCGGCGATGATGTGA
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