mRNA_H-canaliculatus_M_contigs7572.3.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7572.3.1
Unique NamemRNA_H-canaliculatus_M_contigs7572.3.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs7572.3.1 vs.
Match: Nucleotide (binding protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMQ4_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 8.840e-21
Identity = 45/62 (72.58%), Postives = 52/62 (83.87%), Query Frame = 1 
Query:    1 DVLPGSLLGPVIGLSFSADGELLLACSGSSLSVYDVRSGALLSTVPVFTPGVAVYGVDVGRE 186
            DVLPG LLGPV+GL+FS  G+LL +CSGSSL VYDVRSGA LS   VF+PGV V+G+DVGRE
Sbjct:   17 DVLPGPLLGPVMGLAFSTGGDLLFSCSGSSLRVYDVRSGAPLSATRVFSPGVTVHGIDVGRE 78
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BLAST of mRNA_H-canaliculatus_M_contigs7572.3.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGL5_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 8.850e-21
Identity = 45/62 (72.58%), Postives = 52/62 (83.87%), Query Frame = 1 
Query:    1 DVLPGSLLGPVIGLSFSADGELLLACSGSSLSVYDVRSGALLSTVPVFTPGVAVYGVDVGRE 186
            DVLPG LLGPV+GL+FS  G+LL +CSGSSL VYDVRSGA LS   VF+PGV V+G+DVGRE
Sbjct:   17 DVLPGPLLGPVMGLAFSTGGDLLFSCSGSSLRVYDVRSGAPLSATRVFSPGVTVHGIDVGRE 78
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7572.3.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Nucleotide8.840e-2172.58binding protein, putative n=1 Tax=Ectocarpus silic... [more]
Uncharacterized8.850e-2172.58protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7572contigH-canaliculatus_M_contigs7572:4076..4288 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LMQ4
Model size213
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.45e-21
EggNOG OGsKOG0974@1|root,KOG0974@2759|Eukaryota
Descriptioncell cycle
Cds size213
COG categoryC
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854094.349804-CDS-H-canaliculatus_M_contigs7572:4075..42881696854094.349804-CDS-H-canaliculatus_M_contigs7572:4075..4288Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7572 4076..4288 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7572.3.1prot_H-canaliculatus_M_contigs7572.3.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7572 4076..4288 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7572.3.1

>prot_H-canaliculatus_M_contigs7572.3.1 ID=prot_H-canaliculatus_M_contigs7572.3.1|Name=mRNA_H-canaliculatus_M_contigs7572.3.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=71bp
DVLPGSLLGPVIGLSFSADGELLLACSGSSLSVYDVRSGALLSTVPVFTP
GVAVYGVDVGREYREFANYS*
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mRNA from alignment at H-canaliculatus_M_contigs7572:4076..4288+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7572.3.1 ID=mRNA_H-canaliculatus_M_contigs7572.3.1|Name=mRNA_H-canaliculatus_M_contigs7572.3.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=213bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7572:4076..4288+ (Hapterophycus canaliculatus Oshoro7m male)
GACGTGCTGCCCGGATCGCTGCTCGGCCCCGTCATCGGACTCTCCTTCTC
GGCGGACGGCGAGCTACTGCTCGCCTGCAGCGGCTCGTCTCTGTCGGTAT
ACGACGTGCGCTCCGGCGCCCTCCTTTCGACCGTGCCGGTCTTCACGCCC
GGAGTGGCTGTGTACGGGGTTGACGTCGGCCGGGAATACCGTGAGTTCGC
GAACTATTCGTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7572:4076..4288+

>mRNA_H-canaliculatus_M_contigs7572.3.1 ID=mRNA_H-canaliculatus_M_contigs7572.3.1|Name=mRNA_H-canaliculatus_M_contigs7572.3.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=213bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7572:4076..4288+ (Hapterophycus canaliculatus Oshoro7m male)
GACGTGCTGCCCGGATCGCTGCTCGGCCCCGTCATCGGACTCTCCTTCTC
GGCGGACGGCGAGCTACTGCTCGCCTGCAGCGGCTCGTCTCTGTCGGTAT
ACGACGTGCGCTCCGGCGCCCTCCTTTCGACCGTGCCGGTCTTCACGCCC
GGAGTGGCTGTGTACGGGGTTGACGTCGGCCGGGAATACCGTGAGTTCGC
GAACTATTCGTGA
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