mRNA_H-canaliculatus_F_contig1001.47.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1001.47.1
Unique NamemRNA_H-canaliculatus_F_contig1001.47.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1001.47.1 vs. uniprot
Match: A0A6H5K6L5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6L5_9PHAE)

HSP 1 Score: 167 bits (424), Expect = 6.620e-41
Identity = 81/94 (86.17%), Postives = 88/94 (93.62%), Query Frame = 1 
Query: 1207 LAPYARIEAETVSDDGLEDLLHTEKREGFLDLRRFRKPGWPRPLRITRLEASHGKRFEEHLLLLLEQSRRVEATIFLRRLVHYDRNPPHLAASL 1488
            LAPYARIE ETV D+GLE+LLHT +R+GFLDLRR+RKPGWPRPLRITRLEASHGKRFEEHLLLLL+Q RR EA +FLRRLVHYDRNPPHLAASL
Sbjct:  885 LAPYARIEEETVDDEGLEELLHTARRDGFLDLRRYRKPGWPRPLRITRLEASHGKRFEEHLLLLLKQRRRREANVFLRRLVHYDRNPPHLAASL 978
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BLAST of mRNA_H-canaliculatus_F_contig1001.47.1 vs. uniprot
Match: D8LDD7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDD7_ECTSI)

HSP 1 Score: 151 bits (382), Expect = 4.760e-38
Identity = 73/88 (82.95%), Postives = 80/88 (90.91%), Query Frame = 1 
Query: 1228 EAETVSDDGLEDLLHTEKREGFLDLRRFRKPGWPRPLRITRLEASHGKRFEEHLLLLLEQSRRVEATIFLRRLVHYDRNPPHLAASLL 1491
            E ETV D+GLE LLHT +R+GFLDLRR+RKPGWPRPLRITRLEASHGKRFEEHLL+LL+Q RR EA +FLRRL HYDRNPPHLAASLL
Sbjct:  133 EEETVDDEGLEGLLHTARRDGFLDLRRYRKPGWPRPLRITRLEASHGKRFEEHLLVLLKQRRRREANVFLRRLAHYDRNPPHLAASLL 220
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1001.47.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K6L5_9PHAE6.620e-4186.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LDD7_ECTSI4.760e-3882.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1001contigH-canaliculatus_F_contig1001:25113..27737 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-25_001640.1
Exons3
Model size1493
Cds size1491
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1001.47.1prot_H-canaliculatus_F_contig1001.47.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1001 25114..27737 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928629.1301737-CDS-H-canaliculatus_F_contig1001:25113..252311622928629.1301737-CDS-H-canaliculatus_F_contig1001:25113..25231Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1001 25114..25231 -
1696845501.8555703-CDS-H-canaliculatus_F_contig1001:25113..252311696845501.8555703-CDS-H-canaliculatus_F_contig1001:25113..25231Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1001 25114..25231 -
1622928629.1524649-CDS-H-canaliculatus_F_contig1001:25740..262561622928629.1524649-CDS-H-canaliculatus_F_contig1001:25740..26256Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1001 25741..26256 -
1696845501.8661084-CDS-H-canaliculatus_F_contig1001:25740..262561696845501.8661084-CDS-H-canaliculatus_F_contig1001:25740..26256Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1001 25741..26256 -
1622928629.165625-CDS-H-canaliculatus_F_contig1001:26880..277371622928629.165625-CDS-H-canaliculatus_F_contig1001:26880..27737Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1001 26881..27737 -
1696845501.875463-CDS-H-canaliculatus_F_contig1001:26880..277371696845501.875463-CDS-H-canaliculatus_F_contig1001:26880..27737Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1001 26881..27737 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1001.47.1

>prot_H-canaliculatus_F_contig1001.47.1 ID=prot_H-canaliculatus_F_contig1001.47.1|Name=mRNA_H-canaliculatus_F_contig1001.47.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=497bp
GAGGAQRRQVQQRQRQARAGYAAPQGSVGSPAGSPPAARATCCSRSPSRR
LAGHGGGVVGGGGTEGGAGRKSRTRPRKGSPTLSSSPLALRTRSRDALRR
GSAEGTAAQAEGTAAGGAAVKKGGRETIDVDIEMPPRARPRRTAVASSPA
SRASIPPRCSAHRSVARVAGGAVPGGSDGVAGGARSRGTAGGVGSAGASE
VAGWLRQEEGKESGIMSPSSSPPLPPPPPPPPGRRQGQEQRQKEVAPPSS
GKTKKRRQTLMVVPGDGVAGRLVGSSGRRAGAAGKRRRSSIEATGSRGTG
GEAGVHDPPSPAKRPRVKVERTGTREASLAEDVAVRGASSGGGGGGSGRD
RTPPESTRRRGNPSIATRRRSTSVSASVAAGGGGGGGGGGGAGAQYYDPL
DPLAPYARIEAETVSDDGLEDLLHTEKREGFLDLRRFRKPGWPRPLRITR
LEASHGKRFEEHLLLLLEQSRRVEATIFLRRLVHYDRNPPHLAASLL
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mRNA from alignment at H-canaliculatus_F_contig1001:25113..27737-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1001.47.1 ID=mRNA_H-canaliculatus_F_contig1001.47.1|Name=mRNA_H-canaliculatus_F_contig1001.47.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2625bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1001:25113..27737- (Hapterophycus canaliculatus Oshoro5f female)
GGCGCGGGTGGCGCGCAGCGGCGGCAGGTACAACAGCGACAGCGGCAGGC
GCGTGCGGGATACGCCGCGCCACAGGGCAGCGTAGGTTCACCCGCAGGTT
CACCCCCCGCCGCACGGGCTACCTGCTGCAGCCGCTCGCCCTCCCGTAGG
CTTGCCGGTCACGGCGGCGGGGTTGTCGGCGGCGGTGGTACTGAAGGCGG
TGCCGGTCGCAAGAGCCGTACTCGTCCTCGGAAGGGAAGTCCGACGTTGT
CGTCGTCTCCTTTGGCTCTCCGGACCCGCAGCCGCGACGCCCTCCGCCGT
GGCTCTGCCGAAGGCACCGCCGCGCAGGCGGAAGGTACGGCAGCCGGAGG
TGCAGCAGTGAAGAAAGGCGGGCGAGAGACGATCGACGTGGATATCGAAA
TGCCTCCACGGGCCCGACCCCGGCGCACCGCCGTGGCGTCGTCGCCTGCT
TCTCGAGCTTCGATCCCGCCACGATGCTCAGCACACCGGTCGGTTGCTCG
CGTCGCCGGCGGGGCGGTCCCAGGCGGTTCCGATGGCGTTGCGGGTGGCG
CTCGCAGCAGGGGCACGGCGGGGGGCGTCGGATCGGCCGGCGCCTCGGAG
GTGGCAGGATGGTTGCGGCAGGAGGAGGGGAAGGAGAGTGGTATTATGTC
CCCGTCGTCATCGCCGCCGCTGCCGCCGCCGCCGCCACCACCACCCGGAC
GGCGGCAGGGACAGGAACAGCGACAGAAGGAGGTGGCCCCACCATCCAGC
GGCAAGACGAAGAAGAGGCGGCAGACGCTGATGGTGGTGCCGGGAGATGG
CGTTGCGGGAAGGCTGGTGGGCTCGTCCGGTCGGCGGGCCGGCGCTGCTG
GGAAGAGGTAAGCGACTTCGTTGCCCCACGGGTGAGGGAGGTTGACTTTG
TCGCGCGAGGTGCTTGATGGCTGCTGGGTGTCGTAGGAAAGAGCCAGAGC
CAGCGGCGAATAAGGAGGACCACGGTAAGCCAGGCAGTGCGGCGTGGAGC
ACGCTGCAGAAGACGCGTGCTCGAGCTGAAGTGCTGGAAGTCTCTTCTTC
TTGTGGTTCTTGCTAACAACGACCCGGGGAGGACCAGAGCATGATACAAG
GGCAGAGATGCAAGAGAGGGGCACAAAGAAACCAGCCACGGGGCCACTCT
TTCACGGCGGCTTCCCGCGAAAGGTCTTGTTTTCCCGAAGATGACGCGTC
AGTCGCCTCCCTCGCGCTGTGATGGGTGTTGACGCGAAGCGTTTGTCACG
CGTCGCCCTTTTGCTGCACCCGAGGTTAGTCCCAAGCACCTCCATCGCGT
TAAGCAATCCTGCCGCCGAATTGTCCACCCGCCGCTCCCTCCGCCCGCGC
GTGCGCAACCTTCCGGCCTGATCTTCCTTCTCTGCGCGAAGCTCGTCGCC
TCGCAGCACCGGCTAACAAGGCCTCCCCACGGTCCATCGTTTCCGCCTCG
CCGCTTGTTTCTTCGACTCCTTCCCACGCAGGCGCCGTTCCAGTATCGAA
GCGACTGGTTCACGAGGGACAGGAGGCGAAGCGGGTGTTCACGATCCTCC
GTCACCCGCTAAGAGGCCCCGAGTCAAGGTCGAGAGGACCGGCACCCGGG
AAGCGTCTCTCGCCGAGGACGTTGCAGTGCGCGGTGCAAGTAGCGGCGGC
GGCGGCGGCGGCAGCGGCCGGGACCGCACACCGCCGGAGAGCACGCGTCG
GAGGGGAAACCCGTCCATCGCAACGAGGAGGAGGTCGACGTCCGTGTCAG
CATCGGTGGCGGCAGGAGGAGGGGGGGGAGGAGGAGGAGGAGGGGGGGCT
GGCGCCCAATACTACGATCCGCTCGACCCGCTCGCGCCCTACGCCAGGAT
CGAGGCGGAGACGGTGAGCGATGACGGGCTGGAGGACCTCCTCCACACCG
AAAAGCGAGAGGGATTCCTGGACCTTCGGAGGTTCAGGAAGCCCGGGTGG
CCGCGCCCGCTTAGAATCACACGGCTTGAGGCCAGCCACGGCAAGAGGTG
AGCAGGGTTTGTATAATTCGGAGGGATGTTGGTCAGGAAAAGCCCCGCAG
ATGATTCGGGGCCATATACGTTTATATAAAAGGTAACGGGGTTCCGAGGT
TGAAAACGAACGGGTGGAGAGTGCGGAGCGTGCATGGCGCGTGTTTTTCT
CACAGGCATCGGCGGGGTTAAGGTTCTCTGGTCTCAGCTGTTGGTGGGGT
TGGGTGTCTCTCTCAAGTAGCGAGACTTCGGCGCTTGTTATTTTGTTTGT
TCTTCCCTCTGCCAGAGTTTGTCGCGTATTCTACACTTCGAAGCAGGCGA
TTCTCGACGAGGGGCGTGCTTTTTTTCTCACCCATGTCCGCTCTCCGCAC
TTTCTGGCCGAGGAAAACAGCCCCCCTTCCGTCCGGCGGCAGTTCTCGGG
GGTTGCCTCCTTCATGGACCGCTTACTTGCGTTGTTACCACCCCGCCCCA
TCAACGTCACCGCTCGTCCTACCCCACGCCTACCCCTGCCTTCGCTCTGG
CCGCAGGTTCGAGGAGCACCTGCTCCTCCTGCTCGAGCAGAGCCGGAGGG
TGGAAGCGACCATCTTCCTGCGCCGGCTGGTGCACTACGACCGCAACCCT
CCCCACCTCGCTGCCTCTCTCCTGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1001:25113..27737-

>mRNA_H-canaliculatus_F_contig1001.47.1 ID=mRNA_H-canaliculatus_F_contig1001.47.1|Name=mRNA_H-canaliculatus_F_contig1001.47.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2982bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1001:25113..27737- (Hapterophycus canaliculatus Oshoro5f female)
GGCGCGGGTGGCGCGCAGCGGCGGCAGGTACAACAGCGACAGCGGCAGGC
GCGTGCGGGATACGCCGCGCCACAGGGCAGCGTAGGTTCACCCGCAGGTT
CACCCCCCGCCGCACGGGCTACCTGCTGCAGCCGCTCGCCCTCCCGTAGG
CTTGCCGGTCACGGCGGCGGGGTTGTCGGCGGCGGTGGTACTGAAGGCGG
TGCCGGTCGCAAGAGCCGTACTCGTCCTCGGAAGGGAAGTCCGACGTTGT
CGTCGTCTCCTTTGGCTCTCCGGACCCGCAGCCGCGACGCCCTCCGCCGT
GGCTCTGCCGAAGGCACCGCCGCGCAGGCGGAAGGTACGGCAGCCGGAGG
TGCAGCAGTGAAGAAAGGCGGGCGAGAGACGATCGACGTGGATATCGAAA
TGCCTCCACGGGCCCGACCCCGGCGCACCGCCGTGGCGTCGTCGCCTGCT
TCTCGAGCTTCGATCCCGCCACGATGCTCAGCACACCGGTCGGTTGCTCG
CGTCGCCGGCGGGGCGGTCCCAGGCGGTTCCGATGGCGTTGCGGGTGGCG
CTCGCAGCAGGGGCACGGCGGGGGGCGTCGGATCGGCCGGCGCCTCGGAG
GTGGCAGGATGGTTGCGGCAGGAGGAGGGGAAGGAGAGTGGTATTATGTC
CCCGTCGTCATCGCCGCCGCTGCCGCCGCCGCCGCCACCACCACCCGGAC
GGCGGCAGGGACAGGAACAGCGACAGAAGGAGGTGGCCCCACCATCCAGC
GGCAAGACGAAGAAGAGGCGGCAGACGCTGATGGTGGTGCCGGGAGATGG
CGTTGCGGGAAGGCTGGTGGGCTCGTCCGGTCGGCGGGCCGGCGCTGCTG
GGAAGAGGGCGCGGGTGGCGCGCAGCGGCGGCAGGTACAACAGCGACAGC
GGCAGGCGCGTGCGGGATACGCCGCGCCACAGGGCAGCGTAGGTTCACCC
GCAGGTTCACCCCCCGCCGCACGGGCTACCTGCTGCAGCCGCTCGCCCTC
CCGTAGGCTTGCCGGTCACGGCGGCGGGGTTGTCGGCGGCGGTGGTACTG
AAGGCGGTGCCGGTCGCAAGAGCCGTACTCGTCCTCGGAAGGGAAGTCCG
ACGTTGTCGTCGTCTCCTTTGGCTCTCCGGACCCGCAGCCGCGACGCCCT
CCGCCGTGGCTCTGCCGAAGGCACCGCCGCGCAGGCGGAAGGTACGGCAG
CCGGAGGTGCAGCAGTGAAGAAAGGCGGGCGAGAGACGATCGACGTGGAT
ATCGAAATGCCTCCACGGGCCCGACCCCGGCGCACCGCCGTGGCGTCGTC
GCCTGCTTCTCGAGCTTCGATCCCGCCACGATGCTCAGCACACCGGTCGG
TTGCTCGCGTCGCCGGCGGGGCGGTCCCAGGCGGTTCCGATGGCGTTGCG
GGTGGCGCTCGCAGCAGGGGCACGGCGGGGGGCGTCGGATCGGCCGGCGC
CTCGGAGGTGGCAGGATGGTTGCGGCAGGAGGAGGGGAAGGAGAGTGGTA
TTATGTCCCCGTCGTCATCGCCGCCGCTGCCGCCGCCGCCGCCACCACCA
CCCGGACGGCGGCAGGGACAGGAACAGCGACAGAAGGAGGTGGCCCCACC
ATCCAGCGGCAAGACGAAGAAGAGGCGGCAGACGCTGATGGTGGTGCCGG
GAGATGGCGTTGCGGGAAGGCTGGTGGGCTCGTCCGGTCGGCGGGCCGGC
GCTGCTGGGAAGAGGCGCCGTTCCAGTATCGAAGCGACTGGTTCACGAGG
GACAGGAGGCGAAGCGGGTGTTCACGATCCTCCGTCACCCGCTAAGAGGC
CCCGAGTCAAGGTCGAGAGGACCGGCACCCGGGAAGCGTCTCTCGCCGAG
GACGTTGCAGTGCGCGGTGCAAGTAGCGGCGGCGGCGGCGGCGGCAGCGG
CCGGGACCGCACACCGCCGGAGAGCACGCGTCGGAGGGGAAACCCGTCCA
TCGCAACGAGGAGGAGGTCGACGTCCGTGTCAGCATCGGTGGCGGCAGGA
GGAGGGGGGGGAGGAGGAGGAGGAGGGGGGGCTGGCGCCCAATACTACGA
TCCGCTCGACCCGCTCGCGCCCTACGCCAGGATCGAGGCGGAGACGGTGA
GCGATGACGGGCTGGAGGACCTCCTCCACACCGAAAAGCGAGAGGGATTC
CTGGACCTTCGGAGGTTCAGGAAGCCCGGGTGGCCGCGCCCGCTTAGAAT
CACACGGCTTGAGGCCAGCCACGGCAAGAGGCGCCGTTCCAGTATCGAAG
CGACTGGTTCACGAGGGACAGGAGGCGAAGCGGGTGTTCACGATCCTCCG
TCACCCGCTAAGAGGCCCCGAGTCAAGGTCGAGAGGACCGGCACCCGGGA
AGCGTCTCTCGCCGAGGACGTTGCAGTGCGCGGTGCAAGTAGCGGCGGCG
GCGGCGGCGGCAGCGGCCGGGACCGCACACCGCCGGAGAGCACGCGTCGG
AGGGGAAACCCGTCCATCGCAACGAGGAGGAGGTCGACGTCCGTGTCAGC
ATCGGTGGCGGCAGGAGGAGGGGGGGGAGGAGGAGGAGGAGGGGGGGCTG
GCGCCCAATACTACGATCCGCTCGACCCGCTCGCGCCCTACGCCAGGATC
GAGGCGGAGACGGTGAGCGATGACGGGCTGGAGGACCTCCTCCACACCGA
AAAGCGAGAGGGATTCCTGGACCTTCGGAGGTTCAGGAAGCCCGGGTGGC
CGCGCCCGCTTAGAATCACACGGCTTGAGGCCAGCCACGGCAAGAGGTTC
GAGGAGCACCTGCTCCTCCTGCTCGAGCAGAGCCGGAGGGTGGAAGCGAC
CATCTTCCTGCGCCGGCTGGTGCACTACGACCGCAACCCTCCCCACCTCG
CTGCCTCTCTCCTGGTTCGAGGAGCACCTGCTCCTCCTGCTCGAGCAGAG
CCGGAGGGTGGAAGCGACCATCTTCCTGCGCCGGCTGGTGCACTACGACC
GCAACCCTCCCCACCTCGCTGCCTCTCTCCTG
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