mRNA_H-canaliculatus_F_contig15337.3955.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig15337.3955.1
Unique NamemRNA_H-canaliculatus_F_contig15337.3955.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig15337.3955.1 vs. uniprot
Match: D7G248_ECTSI (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G248_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 1.450e-22
Identity = 98/174 (56.32%), Postives = 101/174 (58.05%), Query Frame = 1 
Query:   46 SGGSEWGSWALGKLSETLASSALPSSGPVGGAADPPGMSSSNSHASLGSAAGVXXXXXXXXXXXXXXXXTTALGLNLNGAGNVSASIPGXXXXXXXXXXXXXXXXXX-GKGRFDYVPGEG--DEGGWGGEDEWQDARETQPRTQSPAAYSNGSETATAAQRGFKPPSSLGLKDA 558
            S GSEWGSWALGKLSETLASSALPSSGPVG AA                    XXXXXXXXXX      TTALGLNLNGAGNVSASIPG                   GKG F YVPGE   D+G  GGEDEWQDAR+ QP   S    +NG  T  AA  G KP S L LK A
Sbjct:  560 SAGSEWGSWALGKLSETLASSALPSSGPVG-AAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVPRHHTTALGLNLNGAGNVSASIPGSVASAVAAGLPVGGGGGASGKGMFGYVPGEEGEDDGDGGGEDEWQDARDIQPAPGS----TNGCTTNAAA--GSKPSSILSLKKA 726
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig15337.3955.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G248_ECTSI1.450e-2256.32Protein kinase domain-containing protein n=2 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig15337contigH-canaliculatus_F_contig15337:671..2165 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.2
Seed ortholog evalue1.4e-21
Seed eggNOG ortholog2880.D7G248
Preferred nameCEX1
KEGG koko:K08876
GOsGO:0000049,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0006403,GO:0006405,GO:0006409,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008150,GO:0015031,GO:0015630,GO:0015833,GO:0015931,GO:0031503,GO:0033036,GO:0034613,GO:0042886,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0050657,GO:0050658,GO:0051031,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0070727,GO:0071166,GO:0071426,GO:0071431,GO:0071702,GO:0071705,GO:0097064,GO:0097159,GO:1901363
EggNOG free text desc.protein phosphorylation
EggNOG OGsKOG1243@1,KOG1243@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01001,ko03016
Hectar predicted targeting categoryother localisation
Exons3
Model size718
Cds size717
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig15337.3955.1prot_H-canaliculatus_F_contig15337.3955.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig15337 671..2164 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929270.9754498-CDS-H-canaliculatus_F_contig15337:670..7381622929270.9754498-CDS-H-canaliculatus_F_contig15337:670..738Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15337 671..738 +
1696845744.6992738-CDS-H-canaliculatus_F_contig15337:670..7381696845744.6992738-CDS-H-canaliculatus_F_contig15337:670..738Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15337 671..738 +
1622929270.9882293-CDS-H-canaliculatus_F_contig15337:1227..15971622929270.9882293-CDS-H-canaliculatus_F_contig15337:1227..1597Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15337 1228..1597 +
1696845744.7112389-CDS-H-canaliculatus_F_contig15337:1227..15971696845744.7112389-CDS-H-canaliculatus_F_contig15337:1227..1597Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15337 1228..1597 +
1622929271.0003939-CDS-H-canaliculatus_F_contig15337:1885..21641622929271.0003939-CDS-H-canaliculatus_F_contig15337:1885..2164Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15337 1886..2164 +
1696845744.7200093-CDS-H-canaliculatus_F_contig15337:1885..21641696845744.7200093-CDS-H-canaliculatus_F_contig15337:1885..2164Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15337 1886..2164 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig15337.3955.1

>prot_H-canaliculatus_F_contig15337.3955.1 ID=prot_H-canaliculatus_F_contig15337.3955.1|Name=mRNA_H-canaliculatus_F_contig15337.3955.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=239bp
GVARAGAAVAASKKGSGGSEWGSWALGKLSETLASSALPSSGPVGGAADP
PGMSSSNSHASLGSAAGVSPPASSSSSAVPPRHHTTALGLNLNGAGNVSA
SIPGSVAAAVAAGLPVGGGVAGGKGRFDYVPGEGDEGGWGGEDEWQDARE
TQPRTQSPAAYSNGSETATAAQRGFKPPSSLGLKDAGGGSREGGGGCARK
GEGWDWDDGLDGAVGGDDGDAAAPSPDRPTRVASLRLGG
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mRNA from alignment at H-canaliculatus_F_contig15337:671..2165+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig15337.3955.1 ID=mRNA_H-canaliculatus_F_contig15337.3955.1|Name=mRNA_H-canaliculatus_F_contig15337.3955.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1495bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15337:671..2165+ (Hapterophycus canaliculatus Oshoro5f female)
GGGGTGGCGAGGGCTGGCGCGGCGGTGGCGGCGTCGAAGAAGGGTTCCGG
GGGCTCGGAGTGGGGAAGGTGTGTCTTCATGTGCTTTGCCACGTGTGCGG
GTGTGCGTACGTTCCATTTTGTCCTCCCCCCCCCTGTGATCATGCGCATC
AAGCTCTACGATTGTTGATTGACGGTGATTTGTGGTGGAAAGCAAAAAGA
TGGTCTCAAGGGAGCAGCAGCTTCCCCTCCGGGGGCGGCGGGTACGGCAC
GGAGGAGTGGGGAGGGAGGAAGGGAAAATCTCGTGCCTTTCTGAATCGGC
TTCAACTCATGGCACTCTTGTTGGGTCTACCATCGTTGTTTGGGCGCGAT
TTGAAACTACGTGCTTGCTTATCCACAACCCCCCTCCGCCCGCCCCCCCC
GTCCCCCCCCCCGTTCCTTCCACTTTTTCCACCCCTCTCTCTTCCCTCCC
TCCCTCCATCGAACACAACCGACACCTGTCACCACCAACACCATTAACAC
CACCAACACCATCACCACCACAACCAACACCAACACCAACACCAACACCA
ACACCAGCTGGGCGCTCGGAAAGCTGTCCGAAACTCTGGCGAGCTCTGCC
CTCCCGAGCAGCGGCCCCGTCGGCGGCGCGGCGGACCCCCCCGGCATGAG
CAGCAGCAACAGCCACGCCTCCTTGGGGTCGGCGGCCGGGGTGTCCCCCC
CCGCCTCGTCGTCCTCGTCCGCGGTGCCCCCGAGGCACCACACCACGGCC
CTCGGCCTGAACCTCAACGGCGCGGGGAACGTTTCGGCGAGCATCCCCGG
CTCTGTCGCTGCGGCTGTGGCGGCGGGGCTTCCCGTCGGGGGAGGCGTGG
CGGGTGGGAAGGGGAGGTTTGACTACGTCCCCGGGGAAGGGGACGAGGGC
GGTTGGGGCGGAGAAGACGAGTGGCAGGTGAGCTGTTGTTGTTGTTGTTG
TTGTTGTTGTTGATGCAGCCTTCTCTCCCCGCACACAACCGTTCGCCTAG
CCACCCCCAAAATCCGCACACCCGGGTTCCGCCCCCGTTCTATCCCACCC
CCAAAGCGCGAGAGCGTGAACACGAACATGGACCTTTCGCAACAGGCAGC
AGTACGCAGAGCCAAACCCTCCGATCGCCGTCCCCCCAATTCCTCGCTCG
CCACGACTTGTGACTTGTGTCCCGGTACGCTCCCTGCCCACCTTACCTGC
CTGCTCTCTCCACAGGATGCTCGAGAAACGCAGCCACGGACGCAGAGCCC
CGCCGCCTACAGCAACGGCTCGGAGACGGCAACGGCGGCGCAACGGGGCT
TCAAGCCGCCGTCCTCACTCGGCCTGAAGGACGCCGGGGGGGGTTCCCGC
GAGGGCGGCGGAGGCTGTGCCCGCAAGGGGGAAGGGTGGGACTGGGACGA
CGGCCTCGATGGCGCGGTAGGGGGCGATGACGGGGACGCGGCGGCGCCGT
CCCCTGACCGGCCGACTCGAGTCGCCTCGCTGCGGCTGGGCGGGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig15337:671..2165+

>mRNA_H-canaliculatus_F_contig15337.3955.1 ID=mRNA_H-canaliculatus_F_contig15337.3955.1|Name=mRNA_H-canaliculatus_F_contig15337.3955.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1434bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15337:671..2165+ (Hapterophycus canaliculatus Oshoro5f female)
GGGGTGGCGAGGGCTGGCGCGGCGGTGGCGGCGTCGAAGAAGGGTTCCGG
GGGCTCGGAGTGGGGAAGGGGGTGGCGAGGGCTGGCGCGGCGGTGGCGGC
GTCGAAGAAGGGTTCCGGGGGCTCGGAGTGGGGAAGCTGGGCGCTCGGAA
AGCTGTCCGAAACTCTGGCGAGCTCTGCCCTCCCGAGCAGCGGCCCCGTC
GGCGGCGCGGCGGACCCCCCCGGCATGAGCAGCAGCAACAGCCACGCCTC
CTTGGGGTCGGCGGCCGGGGTGTCCCCCCCCGCCTCGTCGTCCTCGTCCG
CGGTGCCCCCGAGGCACCACACCACGGCCCTCGGCCTGAACCTCAACGGC
GCGGGGAACGTTTCGGCGAGCATCCCCGGCTCTGTCGCTGCGGCTGTGGC
GGCGGGGCTTCCCGTCGGGGGAGGCGTGGCGGGTGGGAAGGGGAGGTTTG
ACTACGTCCCCGGGGAAGGGGACGAGGGCGGTTGGGGCGGAGAAGACGAG
TGGCAGCTGGGCGCTCGGAAAGCTGTCCGAAACTCTGGCGAGCTCTGCCC
TCCCGAGCAGCGGCCCCGTCGGCGGCGCGGCGGACCCCCCCGGCATGAGC
AGCAGCAACAGCCACGCCTCCTTGGGGTCGGCGGCCGGGGTGTCCCCCCC
CGCCTCGTCGTCCTCGTCCGCGGTGCCCCCGAGGCACCACACCACGGCCC
TCGGCCTGAACCTCAACGGCGCGGGGAACGTTTCGGCGAGCATCCCCGGC
TCTGTCGCTGCGGCTGTGGCGGCGGGGCTTCCCGTCGGGGGAGGCGTGGC
GGGTGGGAAGGGGAGGTTTGACTACGTCCCCGGGGAAGGGGACGAGGGCG
GTTGGGGCGGAGAAGACGAGTGGCAGGATGCTCGAGAAACGCAGCCACGG
ACGCAGAGCCCCGCCGCCTACAGCAACGGCTCGGAGACGGCAACGGCGGC
GCAACGGGGCTTCAAGCCGCCGTCCTCACTCGGCCTGAAGGACGCCGGGG
GGGGTTCCCGCGAGGGCGGCGGAGGCTGTGCCCGCAAGGGGGAAGGGTGG
GACTGGGACGACGGCCTCGATGGCGCGGTAGGGGGCGATGACGGGGACGC
GGCGGCGCCGTCCCCTGACCGGCCGACTCGAGTCGCCTCGCTGCGGCTGG
GCGGGGATGCTCGAGAAACGCAGCCACGGACGCAGAGCCCCGCCGCCTAC
AGCAACGGCTCGGAGACGGCAACGGCGGCGCAACGGGGCTTCAAGCCGCC
GTCCTCACTCGGCCTGAAGGACGCCGGGGGGGGTTCCCGCGAGGGCGGCG
GAGGCTGTGCCCGCAAGGGGGAAGGGTGGGACTGGGACGACGGCCTCGAT
GGCGCGGTAGGGGGCGATGACGGGGACGCGGCGGCGCCGTCCCCTGACCG
GCCGACTCGAGTCGCCTCGCTGCGGCTGGGCGGG
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