mRNA_H-canaliculatus_F_contig10007.39.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10007.39.1
Unique NamemRNA_H-canaliculatus_F_contig10007.39.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig10007.39.1 vs. uniprot
Match: A0A6H5LBZ3_9PHAE (Myosin motor domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBZ3_9PHAE)

HSP 1 Score: 739 bits (1909), Expect = 4.570e-262
Identity = 381/439 (86.79%), Postives = 388/439 (88.38%), Query Frame = 1
Query:    1 TMGFDESSIQTIFDIMAGLIHLGELEFEANEEDEAAMLSDEEENMECMARVCRLCYLPEEGLLRALTSKTIEVGPRKEKTTIKLKDHQAYDARDALAKAFYGQLFNWLVATINSHINCDRKEVKASVGVLDIFGFECFEHNSFEQLCINYTNETLQQQFNQFVFKMEQKEYSKEGIEWSFVEFPDNQ--------------------------------------DCLDLIEGKKKGLLTMLDDECRMGIRGTDANYASRLYKEHEETDRFEADSAMRTKLCFAVKHYAGQVEYHVETFCDKNKDELPKESDELFASSENPFVVSLFAPPGGKKAKTKGKKPVAPKPKKDPSTGVAGLKPTVGTQFKDQLHNLMDMIRDTRPHYIRCIKPNDNAEPDEVSRVRVMEQLRYGGVLEAVRVARSGYPVRLPHKVGPSRHRF 1203
            TMGF++SSIQTIFDIMAGLIHLGELEFEANEEDEAAMLSDEEEN ECMARVCRLCYLPEEGLLRALTSKTIEVGPRKEKTTIKLKDHQAYDARDALAKAFYGQLFNWLVATINSHINCDRKEVKASVGVLDIFGFECFEHNSFEQLCINYTNETLQQQFNQFVFKMEQKEYSKEGIEWSFVEFPDNQ                                      DCLDLIEGKKKGLLTMLDDECRMGIRGTDANYASRLYKEH ET+RFEADSAMRTKLCFAVKHYAGQVEYHVETFCDKNKDELPKESDELFASS N FVV+LFAP G KKAKTKGKKP APKPKKD S GVAGLKPTVGTQFKDQLHNLMDMIRDTRPHYIRCIKPNDNAEPDEVSRVRVMEQLRYGGVLEAVRVARSGYPVRLPHK+  + +R 
Sbjct:  327 TMGFEDSSIQTIFDIMAGLIHLGELEFEANEEDEAAMLSDEEENQECMARVCRLCYLPEEGLLRALTSKTIEVGPRKEKTTIKLKDHQAYDARDALAKAFYGQLFNWLVATINSHINCDRKEVKASVGVLDIFGFECFEHNSFEQLCINYTNETLQQQFNQFVFKMEQKEYSKEGIEWSFVEFPDNQGESTRVSPSRHSPHPFLGGSRYALKLIALSFVRSFAPQDCLDLIEGKKKGLLTMLDDECRMGIRGTDANYASRLYKEHAETERFEADSAMRTKLCFAVKHYAGQVEYHVETFCDKNKDELPKESDELFASSTNDFVVNLFAPAGAKKAKTKGKKPAAPKPKKDAS-GVAGLKPTVGTQFKDQLHNLMDMIRDTRPHYIRCIKPNDNAEPDEVSRVRVMEQLRYGGVLEAVRVARSGYPVRLPHKLYHTTNRI 764          
BLAST of mRNA_H-canaliculatus_F_contig10007.39.1 vs. uniprot
Match: D8LTS1_ECTSI (Myosin D n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTS1_ECTSI)

HSP 1 Score: 754 bits (1947), Expect = 2.640e-254
Identity = 379/400 (94.75%), Postives = 387/400 (96.75%), Query Frame = 1
Query:    1 TMGFDESSIQTIFDIMAGLIHLGELEFEANEEDEAAMLSDEEENMECMARVCRLCYLPEEGLLRALTSKTIEVGPRKEKTTIKLKDHQAYDARDALAKAFYGQLFNWLVATINSHINCDRKEVKASVGVLDIFGFECFEHNSFEQLCINYTNETLQQQFNQFVFKMEQKEYSKEGIEWSFVEFPDNQDCLDLIEGKKKGLLTMLDDECRMGIRGTDANYASRLYKEHEETDRFEADSAMRTKLCFAVKHYAGQVEYHVETFCDKNKDELPKESDELFASSENPFVVSLFAPPGGKKAKTKGKKPVAPKPKKDPSTGVAGLKPTVGTQFKDQLHNLMDMIRDTRPHYIRCIKPNDNAEPDEVSRVRVMEQLRYGGVLEAVRVARSGYPVRLPHKVGPSRHR 1200
            TMGF+ SSIQTIFDIMAGLIHLGELEFEANEEDEAAMLSDEEEN ECMARVCRLCYLPE+GLLRALTSKTIEVGPRKEKTTIKLKDHQAYDARDALAKAFYGQLFNWLVATINSHINCDRKEVKASVGVLDIFGFECFEHNSFEQLCINYTNETLQQQFNQFVFKMEQKEYSKEGIEWSFVEFPDNQDCLDLIEGKKKGLLTMLDDECRMGIRGTDANYASRLYKEH ET+RFE+DSAMRTKLCFAVKHYAGQVEYHVETFCDKNKDELPKESDELFASS N FVV+LFAP G KKAKTKGKKP APKPKKD S GVAGLKPTVGTQFKDQLHNLMDMI+DTRPHYIRCIKPNDNAEPDEVSRVRVMEQLRYGGVLEAVRVARSGYPVRLPHK   +R+R
Sbjct:  340 TMGFEASSIQTIFDIMAGLIHLGELEFEANEEDEAAMLSDEEENQECMARVCRLCYLPEDGLLRALTSKTIEVGPRKEKTTIKLKDHQAYDARDALAKAFYGQLFNWLVATINSHINCDRKEVKASVGVLDIFGFECFEHNSFEQLCINYTNETLQQQFNQFVFKMEQKEYSKEGIEWSFVEFPDNQDCLDLIEGKKKGLLTMLDDECRMGIRGTDANYASRLYKEHAETERFESDSAMRTKLCFAVKHYAGQVEYHVETFCDKNKDELPKESDELFASSTNDFVVNLFAPAGAKKAKTKGKKPAAPKPKKDAS-GVAGLKPTVGTQFKDQLHNLMDMIKDTRPHYIRCIKPNDNAEPDEVSRVRVMEQLRYGGVLEAVRVARSGYPVRLPHKDFYTRYR 738          
BLAST of mRNA_H-canaliculatus_F_contig10007.39.1 vs. uniprot
Match: A0A6H5KDB8_9PHAE (Myosin motor domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KDB8_9PHAE)

HSP 1 Score: 692 bits (1786), Expect = 3.920e-240
Identity = 348/408 (85.29%), Postives = 375/408 (91.91%), Query Frame = 1
Query:    1 TMGFDESSIQTIFDIMAGLIHLGELEFEANEEDEAAMLSDEEENMECMARVCRLCYLPEEGLLRALTSKTIEVGPRKEKTTIKLKDHQAYDARDALAKAFYGQLFNWLVATINSHINCDRKEVKASVGVLDIFGFECFEHNSFEQLCINYTNETLQQQFNQFVFKMEQKEYSKEGIEWSFVEFPDNQDCLDLIEGKKKGLLTMLDDECRMGIRGTDANYASRLYKEHEETDRFEADSAMRTKLCFAVKHYAGQVEYHVETFCDKNKDELPKESDELFASSENPFVVSLFAPPGGKKAKTKGKKPVAP--------KPKKDPSTGVAGLKPTVGTQFKDQLHNLMDMIRDTRPHYIRCIKPNDNAEPDEVSRVRVMEQLRYGGVLEAVRVARSGYPVRLPHKVGPSRHR 1200
            TMGF+ SSIQTIFDIMAGLIHLGELEFEA+EED+AA+L  E++N +C+ARVCRLCYLPEEGLLRALTSKTIEVGPRKEKTTIKL DHQAYDARDALAKAFYGQLF+WLVATINSHINCDR++VKASVGVLDIFGFECFEHNSFEQLCINYTNETLQQQFNQFVFKMEQKEYSKEGIEWSFVEFPDNQDCLDLIEGKKKGLLTMLDDECR+GIRGTDANY SRLY+EH E +RFEADSAMRTKLCFA+KHYAG V Y+V TFCDKNKDELP ESD LFASSE+ FVV+LF+P GGKKA++KGK+P++P          KKD S G AGLKPTVGTQF+ QLH+LMDMIRDTRPHYIRCIKPNDNAEPDEVSRVRVMEQLRYGGVLEAVRVARSGYPVRLPHK    R+R
Sbjct:  289 TMGFEASSIQTIFDIMAGLIHLGELEFEASEEDDAAVLFHEDDNEDCLARVCRLCYLPEEGLLRALTSKTIEVGPRKEKTTIKLTDHQAYDARDALAKAFYGQLFDWLVATINSHINCDRRQVKASVGVLDIFGFECFEHNSFEQLCINYTNETLQQQFNQFVFKMEQKEYSKEGIEWSFVEFPDNQDCLDLIEGKKKGLLTMLDDECRLGIRGTDANYFSRLYREHGEAERFEADSAMRTKLCFAIKHYAGHVRYNVHTFCDKNKDELPNESDVLFASSESDFVVNLFSPTGGKKARSKGKRPISPGQSSTNPNTSKKD-SPGYAGLKPTVGTQFRGQLHDLMDMIRDTRPHYIRCIKPNDNAEPDEVSRVRVMEQLRYGGVLEAVRVARSGYPVRLPHKDFYVRYR 695          
BLAST of mRNA_H-canaliculatus_F_contig10007.39.1 vs. uniprot
Match: A0A835YXT9_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXT9_9STRA)

HSP 1 Score: 514 bits (1325), Expect = 1.090e-162
Identity = 269/411 (65.45%), Postives = 325/411 (79.08%), Query Frame = 1
Query:    4 MGFDESSIQTIFDIMAGLIHLGELEFEANEEDEAAMLSDEEENMECMARVCRLCYLPEEGLLRALTSKTIEVGPR--KEKTTIKLKDHQAYDARDALAKAFYGQLFNWLVATINSHINCDRKEVKASVGVLDIFGFECFEHNSFEQLCINYTNETLQQQFNQFVFKMEQKEYSKEGIEWSFVEFPDNQ---DCLDLIEGKKKGLLTMLDDECRMGIRGTDANYASRLYKEHEETDRFEADSAMRTKLCFAVKHYAGQVEYHVETFCDKNKDELPKESDELFASSENPFVVSLFAPPG--GKKAKTKG-----KKPVAPKPKKDPSTGVAGLKPTVGTQFKDQLHNLMDMIRDTRPHYIRCIKPNDNAEPDEVSRVRVMEQLRYGGVLEAVRVARSGYPVRLPHKVGPSRHR 1200
            MGF     ++IF ++A L+HLG++EFE+  +D  A+ S +E+    +  VCRL  LP  GL  ALT +T+E+G +  +E  TIKL++ QA DARDALAKA YGQLF+ +V  IN++INC RK+V+ASVGVLDIFGFECF+ NSFEQLCINYTNETLQQQFNQFVFKMEQKEY+KEGIEWSFVEFPDNQ   DCLDLIEG+ +GLL MLDDECRMG+RG+D NYASRLYKEH  T RF A++A++ +L F++ HYAG+V Y VE+F DKNKDELP+ES+ELFASS +PF+V+LFAPP   GKK   KG     K+  +    K  S   A  KPTVGTQFK+QLHNLMDMIRDTRPHYIRC+KPND A+PD ++R RVMEQLRYGGVLEAVRVARSG+PVRLPHK   +R+R
Sbjct:  596 MGFSAEDQESIFSLVASLLHLGQVEFESGPDD-FAIFSSDEDCQSALQHVCRLACLPRAGLEHALTQRTLEIGAKTMQEVHTIKLEERQAIDARDALAKAIYGQLFDHIVTAINTNINCPRKDVRASVGVLDIFGFECFKKNSFEQLCINYTNETLQQQFNQFVFKMEQKEYTKEGIEWSFVEFPDNQARTDCLDLIEGRPQGLLAMLDDECRMGVRGSDKNYASRLYKEHVNTKRFSAEAALQRELRFSLYHYAGEVIYSVESFLDKNKDELPRESNELFASSTSPFLVNLFAPPDAKGKKKDAKGGGKSDKRRTSGTAAKAESKDKAPPKPTVGTQFKEQLHNLMDMIRDTRPHYIRCVKPNDQAQPDLINRPRVMEQLRYGGVLEAVRVARSGFPVRLPHKEFYARYR 1005          
BLAST of mRNA_H-canaliculatus_F_contig10007.39.1 vs. uniprot
Match: A0A7S2Y0D6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0D6_9STRA)

HSP 1 Score: 399 bits (1025), Expect = 2.050e-122
Identity = 218/403 (54.09%), Postives = 282/403 (69.98%), Query Frame = 1
Query:    4 MGFDESSIQTIFDIMAGLIHLGELEFEANEEDEAAMLSDEEENMECMARVCRLCYLPEEGLLRALTSKTIEVGPRKEKTTIKLKDHQAYDARDALAKAFYGQLFNWLVATINSHINC-DRKEVKASVGVLDIFGFECFEHNSFEQLCINYTNETLQQQFNQFVFKMEQKEYSKEGIEWSFVEFPDNQDCLDLIEGKKKGLLTMLDDECRMGIRGTDANYASRLYKEHEETDRFEADSAMRTKLCFAVKHYAGQVEYHVETFCDKNKDELPKESDELFASSENPFVVSLFAP-PGGKKAKTKGKKPVAPKPKKDPSTGVAGL--KPTVGTQFKDQLHNLMDMIRDTRPHYIRCIKPNDNAEPDEVSRVRVMEQLRYGGVLEAVRVARSGYPVRLPHKVGPSRHR 1200
            MGF+++ + +IF I+AGL+HLG++EF+ +E  E ++LS+++       +   LC+L    LL+A+  + +E   R E   IKLK HQ+ DARDA+AKA YG+LF+WLV  IN  +   + K V+A V VLDIFGFECF+ NSFEQLCINYTNETLQQQFN+FVFKMEQ+EY +EGI WSF++FPDNQDCLDLIEGK  G+L  LDDECR+  +G+D  Y SRLYK  E+  RF A +  +TK  F V+HYAG V Y  + F  KNKDELPK ++ LF +S + FV  LF+  P G ++ +K K+  + + +  P  G  G   KP+VG+QFK QL  LM  I  T PHYIRC+KPND     +  R R++EQLRYGGVLEAVRVARSGYPVRLPH    +R+R
Sbjct:  346 MGFEKADVDSIFSIVAGLLHLGQVEFQPDESGEGSVLSEDDYVKSEYDKAAALCFLNVSELLQAMCIRLMET--RGEVFEIKLKVHQSMDARDAMAKALYGKLFDWLVLKINRALATGNEKNVRAQVSVLDIFGFECFDLNSFEQLCINYTNETLQQQFNRFVFKMEQEEYKREGISWSFIDFPDNQDCLDLIEGKPDGILAFLDDECRLP-KGSDEKYVSRLYKGFEKNQRFYASNKHKTKYQFGVRHYAGLVTYTTDGFLQKNKDELPKAAEILFQNSTSEFVKRLFSDNPLGDESSSKPKRKGSAR-EGGPGAGRLGRMDKPSVGSQFKAQLQELMAKIHVTHPHYIRCLKPNDALAASQFDRSRIIEQLRYGGVLEAVRVARSGYPVRLPHPAFYARYR 744          
BLAST of mRNA_H-canaliculatus_F_contig10007.39.1 vs. uniprot
Match: A0A7S4DA52_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DA52_HETAK)

HSP 1 Score: 381 bits (978), Expect = 5.690e-122
Identity = 214/408 (52.45%), Postives = 272/408 (66.67%), Query Frame = 1
Query:    4 MGFDESSIQTIFDIMAGLIHLGELEFEA--NEEDEAAMLSDEEENMECMARVCRLCYLPEEGLLRALTSKTIEVGPRKEKTTIKLKDHQAYDARDALAKAFYGQLFNWLVATINSHINCDRK-EVKASVGVLDIFGFECFEHNSFEQLCINYTNETLQQQFNQFVFKMEQKEYSKEGIEWSFVEFPDNQDCLDLIEGKKKGLLTMLDDECRMGIRGTDANYASRLYKEHE-ETDRFEADSAMRTKLCFAVKHYAGQVEYHVETFCDKNKDELPKESDELFASSENPFVVSLFAPPGGKKAKTKGKKPVAPKP-KKDPSTGVAGL----KPTVGTQFKDQLHNLMDMIRDTRPHYIRCIKPNDNAEPDEVSRVRVMEQLRYGGVLEAVRVARSGYPVRLPHKVGPSRHR 1200
            MGF E+ +  +  + AG++HLG+L FE+    E E + +++  E    +A+   LC L    L  ALT+ ++ +  R E   ++L+  QA DARDALAK  YG +F WLVA IN  +  +   + +AS+ VLDIFGFECF+ NSFEQLCINYTNE LQQQFNQFVFK+EQKEY +EGIEWSF+EFPDNQDCLDLIEGK +GL+ MLDDECR+  +G D+ YA RLY+  E +  RFE     +    F V+HYAG V Y  + F  KNKD+LPKE++ LF +S + FV  LF    G  A+       A    KK P  G A +    KP++GTQFK QL  LM  +++TRPHYIRC+KPND   PD+  R RV+EQLRYGGVLEAVRVARSGYPVRL H    +R+R
Sbjct:  349 MGFTEAEVDAVLSVTAGVLHLGQLRFESVHTGEGEGSKVAEAPEVGAALAKARELCALDPARLEAALTTNSVSI--RGETFLMRLRPEQAADARDALAKHLYGHMFAWLVAKINGALKGEATAKTRASISVLDIFGFECFDRNSFEQLCINYTNEALQQQFNQFVFKLEQKEYDREGIEWSFIEFPDNQDCLDLIEGKPQGLIAMLDDECRLP-KGQDSKYAGRLYQALEGKHPRFEVSKKDKVDFKFGVRHYAGLVTYETDGFLLKNKDDLPKEAEALFQASTSEFVRGLFELDEGAAAQRGSPAAAAASGRKKRPGAGGAKVGTVDKPSIGTQFKGQLRALMADVQETRPHYIRCLKPNDILAPDQFVRTRVIEQLRYGGVLEAVRVARSGYPVRLAHAEFFARYR 753          
BLAST of mRNA_H-canaliculatus_F_contig10007.39.1 vs. uniprot
Match: A0A7S3HSJ7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HSJ7_9STRA)

HSP 1 Score: 365 bits (937), Expect = 5.330e-116
Identity = 207/420 (49.29%), Postives = 274/420 (65.24%), Query Frame = 1
Query:    1 TMGFDESSIQTIFDIMAGLIHLGELEFEA--NEEDEAAMLSDEEENMECMARVCRLCYLPEEGLLRALTSKTIEVGPRKEKTTIKLKDHQAYDARDALAKAFYGQLFNWLVATINSHINCDRKEVKASVGVLDIFGFECFEHNSFEQLCINYTNETLQQQFNQFVFKMEQKEYSKEGIEWSFVEFPDNQDCLDLIEGKKKGLLTMLDDECRMGIRGTDANYASRLYKEHEETDRFEADSAMRTKLCFAVKHYAGQVEYHVETFCDKNKDELPKESDELFASSENPFVVSLFAPPGGKKAKTKGKKPV-APK-----------------PKKDPSTGVAGLKPTVGTQFKDQLHNLMDMIRDTRPHYIRCIKPNDNAEPDEVSRVRVMEQLRYGGVLEAVRVARSGYPVRLPHKVGPSRHR 1200
            T+ F  +   ++ D+ A L+HLG++ F    + E E + ++D+ E+   +A+   L  L    + + LT +TI    R E    KL   QA DARDA+AKA YG+LF+W+V TIN  I  + K V++S+GVLDIFGFECF HNSFEQLCINYTNETLQQQFNQ++FKMEQ EY KE IEWSF+EFPDNQDCLDLIE K  G+L MLDDECR+G + +D    SR+YK +E+  RF A++  +    F V+HYAG V Y   TF +KN+DE+PKE+  L   S  P +  LF+    + A ++G + + AP+                 P K  ++ +A +  +VGTQFK+QLH LM+ I  T PHYIRC+KPND    D  +R+R+ EQLRYGGVLEAVRVARSG+PVRL H    +R+R
Sbjct:  235 TLNFAPADQVSLLDMTAALLHLGQVNFIGVHSGEGEGSAVADDVESRRSLAKAAELLGLDVNAIAQTLTQRTIVA--RDESYIKKLTPLQASDARDAVAKAIYGKLFDWIVRTINVSIVVEAKLVRSSIGVLDIFGFECFVHNSFEQLCINYTNETLQQQFNQYIFKMEQIEYQKEKIEWSFIEFPDNQDCLDLIEHKVSGILAMLDDECRLG-QASDEKLVSRMYKAYEKNPRFLANAPQKRDHKFCVRHYAGAVVYSAITFVEKNRDEVPKEATSLLQGSTLPLLSQLFS--SAEVAASEGSQKLSAPRXXXXXXXXXXXXXXXXGPTKSKASTIASMN-SVGTQFKEQLHTLMESIYATTPHYIRCLKPNDENISDSFNRLRITEQLRYGGVLEAVRVARSGFPVRLSHLDFFARYR 648          
BLAST of mRNA_H-canaliculatus_F_contig10007.39.1 vs. uniprot
Match: A0A482RWB6_9ARCH (Myosin motor domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RWB6_9ARCH)

HSP 1 Score: 345 bits (886), Expect = 2.120e-108
Identity = 203/406 (50.00%), Postives = 260/406 (64.04%), Query Frame = 1
Query:   34 IFDIMAGLIHLGELEFE--ANEEDEAAMLSDEEENMECMARVCRLCYLPEEGLLRALTSKTIEVGPRKEKTTIKLKDHQAYDARDALAKAFYGQLFNWLVATINSHINCDRKEVKASVGVLDIFGFECFEHNSFEQLCINYTNETLQQQFNQFVFKMEQKEYSKEGIEWSFVEFPDNQDCLDLIEGKKKGLLTMLDDECRMGIRGTDANYASRLYKEHEETDRFEADSAMRTKLCFAVKHYAGQVEYHVETFCDKNKDELPKESDELFASSENPFVVSLFAP------PGGKKAKTKGKKPVAPKPKKDPSTGVAGLKPT--------VGTQFKDQLHNLMDMIRDTRPHYIRCIKPNDNAEPDEVSRVRVMEQLRYGGVLEAVRVARSGYPVRLPHKVGPSRHRF 1203
            +FD +AG++HLG+++F   ++ E E + +S  EE++  +     +C L    +   LT +TI    R E  T KL   QA DARDAL+KA YG+LF+W+V+TIN  +  D+  V+AS+GVLDIFGFE F  NSFEQLCINYTNETLQQQFNQ+VFKMEQ EY +E I+W FV FPDN+D LDLIE +  G+L M++DECR+ +  +D   A R+YK +    RF A +A +    F V HYAG VEY    F DK+KDELP+E+  L   S    +  LFAP        G+   ++G    +P  KK      + LKP+        VG QFK+QL  LMD I  T PHYIRC+KPND   PD+ SRVRV EQLRYGGVLEAVRVARSG+PVRL H    +R+R 
Sbjct:   77 LFDAVAGILHLGQVDFTPTSDGEGEGSEVSRAEESVRSLQAFSLMCGLVAGDVASTLTVRTIVA--RGESYTKKLNKMQASDARDALSKAIYGKLFDWIVSTINICMAVDQTNVRASIGVLDIFGFESFLVNSFEQLCINYTNETLQQQFNQYVFKMEQAEYEREKIDWRFVAFPDNKDTLDLIEHRTSGILAMIEDECRLPM-ASDEKLAGRMYKAYATHSRFAASAAQKRDCKFCVLHYAGPVEYSTLKFVDKSKDELPREATSLMMGSSIRLMAQLFAPVVTAEADMGEAIGSRGGAQGSPV-KKGGKHRSSSLKPSQASAASLNVGIQFKEQLGKLMDCIYATTPHYIRCLKPNDRNLPDQFSRVRVTEQLRYGGVLEAVRVARSGFPVRLVHAEFFARYRL 478          
BLAST of mRNA_H-canaliculatus_F_contig10007.39.1 vs. uniprot
Match: A0A8J2SIQ9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SIQ9_9STRA)

HSP 1 Score: 347 bits (889), Expect = 7.590e-105
Identity = 199/397 (50.13%), Postives = 249/397 (62.72%), Query Frame = 1
Query:    4 MGFDESSIQTIFDIMAGLIHLGELEFEANEEDEAAMLSDEEENMECMARVCRLCYLPEEGLLRALTSKTIEVGPRKEKTTIKLKDHQAYDARDALAKAFYGQLFNWLVATINSHINCDRKEVKASVGVLDIFGFECFEHNSFEQLCINYTNETLQQQFNQFVFKMEQKEYSKEGIEWSFVEFPDNQDCLDLIEGKKK------GLLTMLDDECRMGIRGTDANYASRLYKEHEETDRFEADSAMRTKLCFAVKHYAGQVEYHVETFCDKNKDELPKESDELFASSENPFVVSLFAPPGGKKAKTKGKKPVAPKPKKDPSTGVAGLKPTVGTQFKDQLHNLMDMIRDTRPHYIRCIKPNDNAEPDEVSRVRVMEQLRYGGVLEAVRVARSGYPVRLPH 1176
            +G  +  ++ +F ++AGL HLG++ FE    D+        E+   + R   LC L  + LL+A+T +T+    R E  T++L    A  ARDA+AKA YG+LF WLV  IN  I  +     AS+GVLDIFGFECF  NSFEQLCINYTNETLQQQFN++VFK+EQ+EY +E I WSFVEFPDNQDCLDLIEG +K      GLL MLDDECR+  RG+DANYA+R+ K  +  DR  A         F V+HYAG V Y  + F +KNKDELP ++ +LF  ++  F+    A    +                  +T V   K TV +QFK QL  LM+ I  T PHY+RC+KPND   PDE  R RV EQLRYGGVLEAVRVARSG+PVRLPH
Sbjct:  319 LGVSDGDVKHVFALVAGLTHLGDVLFEFAVGDDGG--GSHVEDRTVLDRAASLCGLDADKLLQAVTQRTVSA--RNESYTVRLVPQDACQARDAVAKALYGRLFAWLVKAINKGIQKNDFRKAASIGVLDIFGFECFSTNSFEQLCINYTNETLQQQFNRYVFKLEQEEYEREKITWSFVEFPDNQDCLDLIEGTRKACPPDGGLLVMLDDECRLP-RGSDANYAARILKSLKSHDRLCASKKQVVDGIFEVRHYAGPVPYVAQGFLEKNKDELPSDAVQLFNDTKG-FLQDCCAAFDQE------------------TTDVKKKKVTVASQFKTQLRKLMESISSTTPHYVRCLKPNDKNIPDEFVRKRVAEQLRYGGVLEAVRVARSGFPVRLPH 691          
BLAST of mRNA_H-canaliculatus_F_contig10007.39.1 vs. uniprot
Match: A0A7S2UQC8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UQC8_9STRA)

HSP 1 Score: 334 bits (857), Expect = 1.770e-100
Identity = 193/414 (46.62%), Postives = 259/414 (62.56%), Query Frame = 1
Query:    1 TMGFDESSIQTIFDIMAGLIHLGELEFEANEED---EAAMLSDEEENMECMARVCRLCYLPEEGLLRALTSKTIEVGPRKEKTTIKLKDHQAYDARDALAKAFYGQLFNWLVATINSHINC-DRKEVKASVGVLDIFGFECFEHNSFEQLCINYTNETLQQQFNQFVFKMEQKEYSKEGIEWSFVEFPDNQDCLDLIEGKKKGLLTMLDDECRMGIRGTDANYASRLYKE--------HEETDRFEADSAMRTKLCFAVKHYAGQVEYHVET-FCDKNKDELPKESDELFASSENPFVVSLFAPPGGKKAKTKGKKPVAPKPKKDPSTGVAGLKPTVGTQFKDQLHNLMDMIRDTRPHYIRCIKPNDNAEPDEVSRVRVMEQLRYGGVLEAVRVARSGYPVRLPHKVGPSRHRF 1203
            +MG+D+  +  +  + AGL+HLG+++F A E D   E A ++D    ++ +    RL  +  E L  ALT + +    R +  TI+L  ++A DARD+LAK  YG LF W+V  +N  I   D  EV++S GVLDIFGFECF  NSFEQLCIN+TNE LQQQFN+F+FKMEQ EY  E I W+F+ FPDNQDCLD I+ KK G+L +LDDECR+  +G+D N+A RLYK           E  RF A    +++  F V+H+AG V+Y   T F +KNKDE+P  +  LF ++ +  +  +F     +  +T+G    +   K     G      TVG QFK+QL NLM  +  T PHYIRC+KPND A+P+ ++R R+ EQLRYGGVLEAVRVAR GYPVRL H     R+R 
Sbjct:  129 SMGWDDEKVDKVLAVTAGLMHLGQIQFNAEENDGGQEIAAVAD----IKTLNSAARLLGVDVEKLRVALTERILVT--RGDAITIQLSPNKAMDARDSLAKTLYGALFLWIVDQVNICIGWEDDSEVRSSTGVLDIFGFECFAINSFEQLCINFTNEALQQQFNKFIFKMEQAEYESEEINWAFIAFPDNQDCLDTIQQKKIGILAILDDECRLP-KGSDKNFAERLYKNFIPNTGQVESENTRFSAKPVQKSRSIFCVRHFAGVVQYTAVTGFMEKNKDEIPLTAKNLFETAPSELIRDVFE---CQVRETEGMNDTS---KAATGGGATPKSKTVGQQFKEQLANLMIAVEKTEPHYIRCLKPNDAAKPNLLTRKRLTEQLRYGGVLEAVRVARMGYPVRLGHSAFYQRYRM 529          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10007.39.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LBZ3_9PHAE4.570e-26286.79Myosin motor domain-containing protein n=1 Tax=Ect... [more]
D8LTS1_ECTSI2.640e-25494.75Myosin D n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
A0A6H5KDB8_9PHAE3.920e-24085.29Myosin motor domain-containing protein n=2 Tax=Ect... [more]
A0A835YXT9_9STRA1.090e-16265.45P-loop containing nucleoside triphosphate hydrolas... [more]
A0A7S2Y0D6_9STRA2.050e-12254.09Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S4DA52_HETAK5.690e-12252.45Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3HSJ7_9STRA5.330e-11649.29Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A482RWB6_9ARCH2.120e-10850.00Myosin motor domain-containing protein (Fragment) ... [more]
A0A8J2SIQ9_9STRA7.590e-10550.13Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2UQC8_9STRA1.770e-10046.62Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10007contigH-canaliculatus_F_contig10007:743..5119 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score759.2
Seed ortholog evalue9.7e-217
Seed eggNOG ortholog2880.D8LTS1
KEGG koko:K10357
GOsGO:0000146,GO:0000166,GO:0000278,GO:0000281,GO:0000302,GO:0000910,GO:0001891,GO:0001931,GO:0003674,GO:0003774,GO:0003779,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005826,GO:0005829,GO:0005856,GO:0005886,GO:0005938,GO:0006928,GO:0006935,GO:0006950,GO:0006970,GO:0006971,GO:0006979,GO:0006996,GO:0007010,GO:0007015,GO:0007033,GO:0007049,GO:0007154,GO:0008064,GO:0008092,GO:0008104,GO:0008144,GO:0008150,GO:0008360,GO:0009267,GO:0009581,GO:0009582,GO:0009605,GO:0009612,GO:0009628,GO:0009636,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010243,GO:0010639,GO:0014070,GO:0014074,GO:0015629,GO:0016020,GO:0016043,GO:0016050,GO:0016459,GO:0016460,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022402,GO:0022603,GO:0022604,GO:0022607,GO:0030029,GO:0030030,GO:0030031,GO:0030036,GO:0030038,GO:0030048,GO:0030139,GO:0030554,GO:0030587,GO:0030832,GO:0030833,GO:0030837,GO:0030863,GO:0030864,GO:0030865,GO:0030866,GO:0030898,GO:0031033,GO:0031034,GO:0031152,GO:0031154,GO:0031254,GO:0031268,GO:0031270,GO:0031333,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031982,GO:0032009,GO:0032060,GO:0032153,GO:0032155,GO:0032271,GO:0032272,GO:0032502,GO:0032535,GO:0032553,GO:0032555,GO:0032559,GO:0032796,GO:0032956,GO:0032970,GO:0032982,GO:0032991,GO:0033036,GO:0033043,GO:0033275,GO:0033298,GO:0033554,GO:0034461,GO:0034622,GO:0035639,GO:0036094,GO:0040011,GO:0042221,GO:0042330,GO:0042493,GO:0042542,GO:0042594,GO:0042623,GO:0042641,GO:0042802,GO:0042803,GO:0042995,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043232,GO:0043254,GO:0043933,GO:0044085,GO:0044087,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044459,GO:0044464,GO:0044764,GO:0044877,GO:0045177,GO:0045179,GO:0045335,GO:0046677,GO:0046683,GO:0046847,GO:0046983,GO:0048519,GO:0048523,GO:0048856,GO:0048870,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0050982,GO:0051015,GO:0051017,GO:0051128,GO:0051129,GO:0051179,GO:0051301,GO:0051493,GO:0051494,GO:0051591,GO:0051606,GO:0051674,GO:0051703,GO:0051704,GO:0051716,GO:0060327,GO:0060328,GO:0061572,GO:0061640,GO:0065003,GO:0065007,GO:0065008,GO:0070252,GO:0070938,GO:0071496,GO:0071840,GO:0071889,GO:0071944,GO:0090066,GO:0090702,GO:0097159,GO:0097204,GO:0097367,GO:0097435,GO:0097708,GO:0098630,GO:0098743,GO:0099120,GO:0099568,GO:0099738,GO:0110053,GO:0120025,GO:0120031,GO:0120036,GO:1901265,GO:1901363,GO:1901698,GO:1901700,GO:1902903,GO:1902904,GO:1903047,GO:1990753
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG5022@1,KOG0160@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03019,ko03029,ko04131,ko04812
Hectar predicted targeting categoryother localisation
Exons7
Model size1215
Cds size1212
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10007.39.1prot_H-canaliculatus_F_contig10007.39.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10007 743..5116 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928628.8295524-CDS-H-canaliculatus_F_contig10007:742..9381622928628.8295524-CDS-H-canaliculatus_F_contig10007:742..938Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10007 743..938 -
1696845501.6693442-CDS-H-canaliculatus_F_contig10007:742..9381696845501.6693442-CDS-H-canaliculatus_F_contig10007:742..938Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10007 743..938 -
1622928628.8426108-CDS-H-canaliculatus_F_contig10007:1486..16251622928628.8426108-CDS-H-canaliculatus_F_contig10007:1486..1625Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10007 1487..1625 -
1696845501.6850123-CDS-H-canaliculatus_F_contig10007:1486..16251696845501.6850123-CDS-H-canaliculatus_F_contig10007:1486..1625Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10007 1487..1625 -
1622928628.8609638-CDS-H-canaliculatus_F_contig10007:2712..28331622928628.8609638-CDS-H-canaliculatus_F_contig10007:2712..2833Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10007 2713..2833 -
1696845501.6947134-CDS-H-canaliculatus_F_contig10007:2712..28331696845501.6947134-CDS-H-canaliculatus_F_contig10007:2712..2833Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10007 2713..2833 -
1622928628.8706794-CDS-H-canaliculatus_F_contig10007:3329..35271622928628.8706794-CDS-H-canaliculatus_F_contig10007:3329..3527Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10007 3330..3527 -
1696845501.7075324-CDS-H-canaliculatus_F_contig10007:3329..35271696845501.7075324-CDS-H-canaliculatus_F_contig10007:3329..3527Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10007 3330..3527 -
1622928628.883305-CDS-H-canaliculatus_F_contig10007:3989..41251622928628.883305-CDS-H-canaliculatus_F_contig10007:3989..4125Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10007 3990..4125 -
1696845501.718247-CDS-H-canaliculatus_F_contig10007:3989..41251696845501.718247-CDS-H-canaliculatus_F_contig10007:3989..4125Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10007 3990..4125 -
1622928628.899471-CDS-H-canaliculatus_F_contig10007:4459..47501622928628.899471-CDS-H-canaliculatus_F_contig10007:4459..4750Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10007 4460..4750 -
1696845501.7280102-CDS-H-canaliculatus_F_contig10007:4459..47501696845501.7280102-CDS-H-canaliculatus_F_contig10007:4459..4750Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10007 4460..4750 -
1622928628.911745-CDS-H-canaliculatus_F_contig10007:4985..51161622928628.911745-CDS-H-canaliculatus_F_contig10007:4985..5116Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10007 4986..5116 -
1696845501.7399561-CDS-H-canaliculatus_F_contig10007:4985..51161696845501.7399561-CDS-H-canaliculatus_F_contig10007:4985..5116Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10007 4986..5116 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928628.9238532-UTR-H-canaliculatus_F_contig10007:5116..51191622928628.9238532-UTR-H-canaliculatus_F_contig10007:5116..5119Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10007 5117..5119 -
1696845501.7481751-UTR-H-canaliculatus_F_contig10007:5116..51191696845501.7481751-UTR-H-canaliculatus_F_contig10007:5116..5119Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10007 5117..5119 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10007.39.1

>prot_H-canaliculatus_F_contig10007.39.1 ID=prot_H-canaliculatus_F_contig10007.39.1|Name=mRNA_H-canaliculatus_F_contig10007.39.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=404bp
MGFDESSIQTIFDIMAGLIHLGELEFEANEEDEAAMLSDEEENMECMARV
CRLCYLPEEGLLRALTSKTIEVGPRKEKTTIKLKDHQAYDARDALAKAFY
GQLFNWLVATINSHINCDRKEVKASVGVLDIFGFECFEHNSFEQLCINYT
NETLQQQFNQFVFKMEQKEYSKEGIEWSFVEFPDNQDCLDLIEGKKKGLL
TMLDDECRMGIRGTDANYASRLYKEHEETDRFEADSAMRTKLCFAVKHYA
GQVEYHVETFCDKNKDELPKESDELFASSENPFVVSLFAPPGGKKAKTKG
KKPVAPKPKKDPSTGVAGLKPTVGTQFKDQLHNLMDMIRDTRPHYIRCIK
PNDNAEPDEVSRVRVMEQLRYGGVLEAVRVARSGYPVRLPHKVGPSRHRF
SDS*
back to top

mRNA from alignment at H-canaliculatus_F_contig10007:743..5119-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10007.39.1 ID=mRNA_H-canaliculatus_F_contig10007.39.1|Name=mRNA_H-canaliculatus_F_contig10007.39.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=4377bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10007:743..5119- (Hapterophycus canaliculatus Oshoro5f female)
ACGATGGGTTTCGACGAGAGCTCCATCCAGACCATCTTCGACATCATGGC CGGGCTCATCCACCTGGGAGAGCTGGAGTTCGAGGCCAATGAAGAGGACG AGGCCGCCATGCTCTCGGACGAGGAGGAGAACATGTGAGAACCGCCTTCA GACGCCACGCTTGTATTCGGTTTCGTTTTCCGTCGTTGTGATCGCTACCG CGGCAGTTGCTGTTGCTGTCGGGATCGTTGTGATTCGTTCCATGGCCGCT GCTGTTGTTGTGACCAACCAACAACCCACTGCTGCCCAGAAGAAGCGCTT TCTCAGCTAGGGAAGCCATCAGCCATCCTGACCCCCCCCCCCCACCCTGC CCTCGACGGTGTGGACCAGGGAGTGCATGGCGCGCGTGTGCCGGCTGTGC TACCTGCCGGAGGAGGGCCTGCTGCGTGCGCTGACGAGCAAGACCATTGA AGTAGGGCCCCGCAAGGAGAAGACGACGATCAAGCTCAAGGACCACCAGG CGTACGACGCCCGGGACGCTCTGGCGAAGGCGTTCTACGGCCAGCTCTTC AACTGGCTGGTGGCCACCATCAACTCGCACATCAACTGCGACCGCAAAGA GGTCAAGGCCTCGGTGGGAGTGCTTGACATCTTCGGGTTCGAGTGCTTCG AGCACAACAGGTTGGTTTTTCTATAACAGAGCTTGTTGGTGACACTTGGT TGGTTCACTGTTGTTGTTTCTGTTGTTGTTGGCGGTGGTGGAGGTAGTTG CACGCAGCAACGGCCTTTTGCAACAACCGTGGTATTTGTCGAGGGGTGAC GTATGCGGCTCGTGGTAGGGCCTGGTGGCTACTCTTGCATGCGTTGCGCA CGTGTTTGATATCCCTACATTGTAGGGAGGGGGAAAACCTTGACCCAACC CCAGCAACTCTTGGCCACCCCCGTTCGCTTCTGCCGCCGCCGATGAATGT GGTGACGGCTGGACCTACCAACCGACTCCTGTTGCTCATCGCAGTTTCGA GCAGCTGTGCATCAACTACACCAACGAAACCCTTCAGCAGCAGTTCAACC AGTTCGTCTTCAAGATGGAGCAAAAGGAGTACAGCAAGGAGGGCATCGAG TGGTCCTTCGTAGAGTTCCCGGACAACCAGGTATGCAATGCAACGCTACC GCAGGCCATGCGAATAAGGAAACGTGAGAAACAAGGAGCCTGCAGCATTA GGGCGCACGCTCTTCCCGAACCTGCCCATCCATGTTGCTTTCGCAGGTTT GTTTGCTTGTGAATCGGGAAAGTCGGTGCCCTCGGATAGAGGACACGGTT CGAAATGGTTGTCCTGTCGACCGCTCGTATGCGACTCTGCCGTCCCTACG AACACGGCGGCGGGGAAGAGTTGTTGGTGCATTGTAGTGCCACCGAGCGG GGTGATTACGGCGTACGGATGTAAACACGCAAGTCGGGTTTTGTTTGCGT CACCTCACGACGCTGGATGGTCTACCGTCTGTGTGTGGTATTCCCTTGTC TACGCCACTGCAGGCTTTTTTCCCTTGGCCGTGCGAGCAGTTCCGCTCTT GACGATGTGTGTCCATCTTGGCCTCCTTCGACCCTCTCGCAGGACTGCCT TGACCTGATCGAGGGCAAGAAGAAGGGCCTACTGACCATGCTCGACGACG AGTGCCGGATGGGCATCCGAGGCACGGACGCGAACTACGCCAGCCGGCTG TACAAGGAGCACGAGGAGACCGATCGCTTCGAGGCAGACAGCGCCATGCG CACCAAGCTCTGCTTCGCCGTCAAGCACTACGCCGGCCAGGTACGTACGC CCAACCCCAATTGAAAAGGAGGAAAGCCGTCCCTCTCGTAGCCTTTTGTG TGTGTGTTTTCCCGAAGACCAGTCCAATGTCGCTACCTGCGCCCGTCCGT AAGAAATGGCGCGGCCGCAGATACGATGCGGCGCTCTTCGAGGATCGTGA AGCGTGTTGGGGTGTGGGTTGTCTCGGCGCATCTTTCCGACGTTGGCGTT TTGCCGAAGCGCGTGTCCTTGCTCGGCGAAGCTCGCACACCCTTGTAGTT TCGGTGGCCCGCCGTGGAGAGCCGTGATAGCTACTTGCACCGCGTGAATT CCGTACGCGACTTGTATCGTACAAGTAGACGCGGAGCGATGGACCTCGCT AGCGTTGCGGGCTTGTCGTGGCGGCCGTCCGGCTGTCCCATGCCTGCGCT CAACTGAGAAATGCGCCCGCCTGTCTTGGCCTTCGCCTTCGCGCGCGTGA TGCGCGTGATGTTCGTGGTGGGCGTGATGGGCGCAGGTGGAGTACCACGT GGAGACGTTCTGCGACAAGAACAAGGACGAGCTGCCGAAGGAGTCGGACG AGCTCTTCGCCAGCAGCGAGAACCCTTTCGTCGTTAGCCTCTTCGCACCT CCCGGAGGTGAGAAACCTACCCCCCCCCACCCGACCCCTTCCCCCCTCGC CCCGATCCGATGCTGATCTCGTTGAAAAGTGTGTTTATCTCCCCGTCCTG TGCGTCCTGTGCTCCCTAGACCAATCGACAAGACCTGAAGTCCGTGGGCG CCTGGGGAAAGCCCACGTTTTTAGTCGGTAGTCCCAGGATCGAATCCGAC CGCACGAATATAAATGAATGAGAGCATTTTTCACTCTTCTTTTTTTTCGA GTTGTTTCCGTGCGTGCGGTTTCCTGTAGCACTTTCTTCGCCTCCCCCCT GCTGCTTCATTTTCTCCTCCGCCTCTCCCGATCGTCGGCAAGGTGGCGTC TGTTATGCACGGGTGGGATCGGGATGTGGGTTATCTCGGCTGAAGTCTTT CGACTACTGCTGTACAAGGAACGTAGGGCGGAAGTAGAGTGGGTTGGTCC TTGAGGGGCATGCCCACGGGCGAAAGAGCTGGAAGAGATGCGATCATTTC CGACTGAGAGGTGGCAGCCTTGAGCAAGGTGGCTGCTTGTATACTACCCA CGATTTCCCAGGCCCTCAACGTTGGGACACCACCATCGACACGATATCGA TGTCGACATCGTGAACACGTGCGATGGCCCTCGAAAGGGTGTTCGAAGGA TTCGTTTCAACCCAGCCCCCTTCCCCGTTCCTTGAGAGATAGAGATAGAG ATAGAGATAGCCTTGATCACAATGGTTGTTGCCAGCTTCTGGTCTTCCTC GCTGCCTGATAAGCGAATGCGCGAAGCGTGTTGGTGACGTGTTACGGGTG ACGATTATCGCCACCGCCGGTCGCGTGGGTCGGGTAGCATGCCGTCGGCG CAGCCAGCAACGGGGCGTTGGTGATGGCGTTGATGATGATGATGATGATG AAATTGATAGCGACCGGCATTCTCGTCGCGTGTGATTCTTGCCATCCGAA TCCGACGTCGCCGAGAGGCGCGCTGCATCGAACCCCCCCCCCCCCTGCTC TGCGGTGGGTGTGCTCAAAAACACAAGAAGCCGCCGACAACTTGTACCAC GCCCTTGCTGTACCCGCCGCCCATGCCCGCACGCGCGCCCCCAGGCAAGA AGGCCAAGACGAAGGGCAAGAAACCGGTCGCCCCCAAGCCGAAGAAGGAC CCGTCCACCGGGGTGGCGGGCCTCAAGCCCACCGTGGGCACTCAGTTCAA GGACCAGCTCCACAACCTCATGGACATGATCAGGTAGACATGATTGGGTC ACGACGCGTGCCGTGAACTCTTCTTTTTTGTTGCCATTCGTTCGTTTTCA TGTGCTTTTTCGCCCAGTCTGTGTTGGACGTTTGTGCGGATCCCGCCGGC GCTGGTTCGAAGAGGGGACGTGTTCGGCCCCGCGTTGGCATCGTTTAAAA AAGCGGTTCGGCAAGGAACAACTTCAGGCCGCCAGGCCCCCGTAGTGAGT CTAGGCGTGTGGCGCCTAGCTCAGGGAGAGGGGTCGGGCTGAGGCGTAGG GCTGTGCAGAGTGTGGACCACCCTGATAAAACGAAAATAATTTTGGCACA CATGATGCTTTTGCGATTGCGAGGCTACAAGAGAGCACCGCCGGGCACGG TCACTCCGTGTTGTTGAGATGGAACCAAGGCTCAATAAGTACCTGATTTC GGTCCTTTCTCGGTACTGCTCTTTTTTCTTAATTCTGGCTGATTTCATCT CTCGTGCTCTCTCCCCCTCCCTCCTCCCTCCTCCCTCCTCTTTCTCTATC TCTCGTGTTTTAATTTCCGTTTGCTTGGCAGGGACACCCGGCCGCACTAC ATCAGGTGCATCAAGCCCAACGACAACGCCGAGCCCGACGAGGTGTCCAG GGTGCGCGTGATGGAGCAGCTGCGGTACGGAGGCGTTCTCGAGGCCGTTC GCGTGGCGAGGTCGGGGTACCCCGTGCGCCTCCCCCACAAGGTAGGCCCT AGTCGCCATCGCTTTTCCGACAGCTAA
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10007:743..5119-

>mRNA_H-canaliculatus_F_contig10007.39.1 ID=mRNA_H-canaliculatus_F_contig10007.39.1|Name=mRNA_H-canaliculatus_F_contig10007.39.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2424bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10007:743..5119- (Hapterophycus canaliculatus Oshoro5f female)
ATGGGTTTCGACGAGAGCTCCATCCAGACCATCTTCGACATCATGGCCGG
GCTCATCCACCTGGGAGAGCTGGAGTTCGAGGCCAATGAAGAGGACGAGG
CCGCCATGCTCTCGGACGAGGAGGAGAACATATGGGTTTCGACGAGAGCT
CCATCCAGACCATCTTCGACATCATGGCCGGGCTCATCCACCTGGGAGAG
CTGGAGTTCGAGGCCAATGAAGAGGACGAGGCCGCCATGCTCTCGGACGA
GGAGGAGAACATGGAGTGCATGGCGCGCGTGTGCCGGCTGTGCTACCTGC
CGGAGGAGGGCCTGCTGCGTGCGCTGACGAGCAAGACCATTGAAGTAGGG
CCCCGCAAGGAGAAGACGACGATCAAGCTCAAGGACCACCAGGCGTACGA
CGCCCGGGACGCTCTGGCGAAGGCGTTCTACGGCCAGCTCTTCAACTGGC
TGGTGGCCACCATCAACTCGCACATCAACTGCGACCGCAAAGAGGTCAAG
GCCTCGGTGGGAGTGCTTGACATCTTCGGGTTCGAGTGCTTCGAGCACAA
CAGGGAGTGCATGGCGCGCGTGTGCCGGCTGTGCTACCTGCCGGAGGAGG
GCCTGCTGCGTGCGCTGACGAGCAAGACCATTGAAGTAGGGCCCCGCAAG
GAGAAGACGACGATCAAGCTCAAGGACCACCAGGCGTACGACGCCCGGGA
CGCTCTGGCGAAGGCGTTCTACGGCCAGCTCTTCAACTGGCTGGTGGCCA
CCATCAACTCGCACATCAACTGCGACCGCAAAGAGGTCAAGGCCTCGGTG
GGAGTGCTTGACATCTTCGGGTTCGAGTGCTTCGAGCACAACAGTTTCGA
GCAGCTGTGCATCAACTACACCAACGAAACCCTTCAGCAGCAGTTCAACC
AGTTCGTCTTCAAGATGGAGCAAAAGGAGTACAGCAAGGAGGGCATCGAG
TGGTCCTTCGTAGAGTTCCCGGACAACCAGTTTCGAGCAGCTGTGCATCA
ACTACACCAACGAAACCCTTCAGCAGCAGTTCAACCAGTTCGTCTTCAAG
ATGGAGCAAAAGGAGTACAGCAAGGAGGGCATCGAGTGGTCCTTCGTAGA
GTTCCCGGACAACCAGGACTGCCTTGACCTGATCGAGGGCAAGAAGAAGG
GCCTACTGACCATGCTCGACGACGAGTGCCGGATGGGCATCCGAGGCACG
GACGCGAACTACGCCAGCCGGCTGTACAAGGAGCACGAGGAGACCGATCG
CTTCGAGGCAGACAGCGCCATGCGCACCAAGCTCTGCTTCGCCGTCAAGC
ACTACGCCGGCCAGGACTGCCTTGACCTGATCGAGGGCAAGAAGAAGGGC
CTACTGACCATGCTCGACGACGAGTGCCGGATGGGCATCCGAGGCACGGA
CGCGAACTACGCCAGCCGGCTGTACAAGGAGCACGAGGAGACCGATCGCT
TCGAGGCAGACAGCGCCATGCGCACCAAGCTCTGCTTCGCCGTCAAGCAC
TACGCCGGCCAGGTGGAGTACCACGTGGAGACGTTCTGCGACAAGAACAA
GGACGAGCTGCCGAAGGAGTCGGACGAGCTCTTCGCCAGCAGCGAGAACC
CTTTCGTCGTTAGCCTCTTCGCACCTCCCGGAGGTGGAGTACCACGTGGA
GACGTTCTGCGACAAGAACAAGGACGAGCTGCCGAAGGAGTCGGACGAGC
TCTTCGCCAGCAGCGAGAACCCTTTCGTCGTTAGCCTCTTCGCACCTCCC
GGAGGCAAGAAGGCCAAGACGAAGGGCAAGAAACCGGTCGCCCCCAAGCC
GAAGAAGGACCCGTCCACCGGGGTGGCGGGCCTCAAGCCCACCGTGGGCA
CTCAGTTCAAGGACCAGCTCCACAACCTCATGGACATGATCAGGCAAGAA
GGCCAAGACGAAGGGCAAGAAACCGGTCGCCCCCAAGCCGAAGAAGGACC
CGTCCACCGGGGTGGCGGGCCTCAAGCCCACCGTGGGCACTCAGTTCAAG
GACCAGCTCCACAACCTCATGGACATGATCAGGGACACCCGGCCGCACTA
CATCAGGTGCATCAAGCCCAACGACAACGCCGAGCCCGACGAGGTGTCCA
GGGTGCGCGTGATGGAGCAGCTGCGGTACGGAGGCGTTCTCGAGGCCGTT
CGCGTGGCGAGGTCGGGGTACCCCGTGCGCCTCCCCCACAAGGTAGGCCC
TAGTCGCCATCGCTTTTCCGACAGCTAAGGACACCCGGCCGCACTACATC
AGGTGCATCAAGCCCAACGACAACGCCGAGCCCGACGAGGTGTCCAGGGT
GCGCGTGATGGAGCAGCTGCGGTACGGAGGCGTTCTCGAGGCCGTTCGCG
TGGCGAGGTCGGGGTACCCCGTGCGCCTCCCCCACAAGGTAGGCCCTAGT
CGCCATCGCTTTTCCGACAGCTAA
back to top