mRNA_H-canaliculatus_F_contig1506.3805.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1506.3805.1
Unique NamemRNA_H-canaliculatus_F_contig1506.3805.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1506.3805.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1506contigH-canaliculatus_F_contig1506:6224..7028 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size381
Cds size381
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929247.9983742-CDS-H-canaliculatus_F_contig1506:6223..62711622929247.9983742-CDS-H-canaliculatus_F_contig1506:6223..6271Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1506 6224..6271 -
1696845734.9924426-CDS-H-canaliculatus_F_contig1506:6223..62711696845734.9924426-CDS-H-canaliculatus_F_contig1506:6223..6271Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1506 6224..6271 -
1622929248.014762-CDS-H-canaliculatus_F_contig1506:6695..70281622929248.014762-CDS-H-canaliculatus_F_contig1506:6695..7028Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1506 6696..7028 -
1696845735.001409-CDS-H-canaliculatus_F_contig1506:6695..70281696845735.001409-CDS-H-canaliculatus_F_contig1506:6695..7028Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1506 6696..7028 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1506.3805.1prot_H-canaliculatus_F_contig1506.3805.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1506 6224..7028 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1506.3805.1

>prot_H-canaliculatus_F_contig1506.3805.1 ID=prot_H-canaliculatus_F_contig1506.3805.1|Name=mRNA_H-canaliculatus_F_contig1506.3805.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=127bp
NVGASSGPVPCGHPTLWGKEGEEDMRVVDCRKHASSWPRGAAGAQRGSPA
RKPSRPVSEDAASSVNARGEARGMTGEGADGDAGDGRDCNTTETLHASQL
AEEAFQGHGDEGCRFLDDDSDNCIAKV
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mRNA from alignment at H-canaliculatus_F_contig1506:6224..7028-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1506.3805.1 ID=mRNA_H-canaliculatus_F_contig1506.3805.1|Name=mRNA_H-canaliculatus_F_contig1506.3805.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=805bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1506:6224..7028- (Hapterophycus canaliculatus Oshoro5f female)
AACGTTGGCGCCAGCAGTGGTCCGGTGCCCTGCGGGCATCCAACGTTGTG
GGGCAAAGAAGGAGAGGAAGATATGCGCGTGGTCGACTGCAGGAAGCACG
CTTCATCGTGGCCTAGGGGTGCCGCCGGGGCGCAGCGAGGGAGTCCAGCT
CGCAAGCCCTCGCGGCCCGTGAGTGAAGACGCTGCCTCATCCGTCAATGC
ACGGGGGGAGGCACGGGGGATGACCGGAGAGGGTGCGGACGGAGATGCTG
GTGACGGCCGAGACTGCAACACTACCGAAACCCTGCACGCCAGCCAACTG
GCCGAGGAGGCTTTCCAAGGTCACGGCGATGAGGTTCGTTGGAAACATGC
GTATAACAAAGCCTTTTGTTTTTCGTTTCTTGAATTTGGGGGGCGGGGCG
TCCTTCGAGGGAGTGGCTTTCGTGCGGTGATGTGCGACCGGCGGGACGGG
AAAGCCCTGAATCGTGCCCCCGCGGCAGGAACTTGGGTGTGCACGTTTGT
GCGCCCAGGTCCGCTCCAAGTAGGGGGGTGTGGCGACGCGGCAACAGATA
GTTCGTGGCAACAGACGAGCCGTGACCGCGAAATTGGCCTGCCCGGATCG
CGCGACACCGGCCCCCTTCGGTTGCTAGCCACGCACCCACCCCCGTCTAC
GCCAGTCACCGCTGACGCGCCAATCTCAATGTGTTTCTACAGGGACGCTC
GTCCGCCTTGACGTTGACTCCAACGCACCACGTTCGCCTTTGGATCGTCT
CTGGCAGGGTTGCCGCTTCTTGGATGACGACTCTGACAACTGCATCGCAA
AAGTA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1506:6224..7028-

>mRNA_H-canaliculatus_F_contig1506.3805.1 ID=mRNA_H-canaliculatus_F_contig1506.3805.1|Name=mRNA_H-canaliculatus_F_contig1506.3805.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=762bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1506:6224..7028- (Hapterophycus canaliculatus Oshoro5f female)
AACGTTGGCGCCAGCAGTGGTCCGGTGCCCTGCGGGCATCCAACGTTGTG
GGGCAAAGAAGGAGAGGAAGATATGCGCGTGGTCGACTGCAGGAAGCACG
CTTCATCGTGGCCTAGGGGTGCCGCCGGGGCGCAGCGAGGGAGTCCAGCT
CGCAAGCCCTCGCGGCCCGTGAGTGAAGACGCTGCCTCATCCGTCAATGC
ACGGGGGGAGGCACGGGGGATGACCGGAGAGGGTGCGGACGGAGATGCTG
GTGACGGCCGAGACTGCAACACTACCGAAACCCTGCACGCCAGCCAACTG
GCCGAGGAGGCTTTCCAAGGTCACGGCGATGAGAACGTTGGCGCCAGCAG
TGGTCCGGTGCCCTGCGGGCATCCAACGTTGTGGGGCAAAGAAGGAGAGG
AAGATATGCGCGTGGTCGACTGCAGGAAGCACGCTTCATCGTGGCCTAGG
GGTGCCGCCGGGGCGCAGCGAGGGAGTCCAGCTCGCAAGCCCTCGCGGCC
CGTGAGTGAAGACGCTGCCTCATCCGTCAATGCACGGGGGGAGGCACGGG
GGATGACCGGAGAGGGTGCGGACGGAGATGCTGGTGACGGCCGAGACTGC
AACACTACCGAAACCCTGCACGCCAGCCAACTGGCCGAGGAGGCTTTCCA
AGGTCACGGCGATGAGGGTTGCCGCTTCTTGGATGACGACTCTGACAACT
GCATCGCAAAAGTAGGTTGCCGCTTCTTGGATGACGACTCTGACAACTGC
ATCGCAAAAGTA
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