mRNA_H-canaliculatus_F_contig15055.3801.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig15055.3801.1
Unique NamemRNA_H-canaliculatus_F_contig15055.3801.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig15055.3801.1 vs. uniprot
Match: D8LCK2_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCK2_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 4.840e-22
Identity = 61/95 (64.21%), Postives = 68/95 (71.58%), Query Frame = 1 
Query:   46 VEAFRKAFAERVGEAGGLKALALSWNGVAKLDAAFVAWVGESGGSTGTDLKAEILRVVSLVETLVHAPPPLFAGLGPLSSSSSSKPSQALARLLG 330
            VEAFR  F E V EAGGLKAL LSW GVA+L+ AF+AWV E+GG+TGTDLKAEILRV SL E LV       AG G   SSSSS    +L+RLLG
Sbjct:  514 VEAFRSEFVESVEEAGGLKALTLSWTGVARLEEAFLAWVVEAGGNTGTDLKAEILRVSSLAEALVKDEARPLAGQG---SSSSSPGFPSLSRLLG 605
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BLAST of mRNA_H-canaliculatus_F_contig15055.3801.1 vs. uniprot
Match: A0A6H5JQC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQC7_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 8.240e-21
Identity = 61/94 (64.89%), Postives = 67/94 (71.28%), Query Frame = 1 
Query:   46 VEAFRKAFAERVGEAGGLKALALSWNGVAKLDAAFVAWVGESGGSTGTDLKAEILRVVSLVETLVHAPPPLFAGLGPLSSSSSSKPSQALARLL 327
            VEAFR  F E V EAGGLKAL LSW GVA+L+ AF+AWV E+GG+TGTDLKAEILRV S  E LV A     AG G   SSSS  PS  L+RLL
Sbjct:  333 VEAFRSEFVESVEEAGGLKALTLSWTGVARLEEAFLAWVVEAGGNTGTDLKAEILRVSSRAEALVKAEARPLAGQG---SSSSGFPS--LSRLL 421
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig15055.3801.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LCK2_ECTSI4.840e-2264.21Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JQC7_9PHAE8.240e-2164.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig15055contigH-canaliculatus_F_contig15055:59..2123 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size478
Cds size474
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig15055.3801.1prot_H-canaliculatus_F_contig15055.3801.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig15055 59..2121 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929247.7962146-CDS-H-canaliculatus_F_contig15055:58..2261622929247.7962146-CDS-H-canaliculatus_F_contig15055:58..226Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15055 59..226 +
1696845734.912654-CDS-H-canaliculatus_F_contig15055:58..2261696845734.912654-CDS-H-canaliculatus_F_contig15055:58..226Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15055 59..226 +
1622929247.8129995-CDS-H-canaliculatus_F_contig15055:1043..12011622929247.8129995-CDS-H-canaliculatus_F_contig15055:1043..1201Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15055 1044..1201 +
1696845734.9237573-CDS-H-canaliculatus_F_contig15055:1043..12011696845734.9237573-CDS-H-canaliculatus_F_contig15055:1043..1201Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15055 1044..1201 +
1622929247.8295875-CDS-H-canaliculatus_F_contig15055:1973..21211622929247.8295875-CDS-H-canaliculatus_F_contig15055:1973..2121Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15055 1974..2121 +
1696845734.9324522-CDS-H-canaliculatus_F_contig15055:1973..21211696845734.9324522-CDS-H-canaliculatus_F_contig15055:1973..2121Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15055 1974..2121 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig15055.3801.1

>prot_H-canaliculatus_F_contig15055.3801.1 ID=prot_H-canaliculatus_F_contig15055.3801.1|Name=mRNA_H-canaliculatus_F_contig15055.3801.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=158bp
EGREGEGGGEGGRGSVEAFRKAFAERVGEAGGLKALALSWNGVAKLDAAF
VAWVGESGGSTGTDLKAEILRVVSLVETLVHAPPPLFAGLGPLSSSSSSK
PSQALARLLGGGGANSGSAYRGAGEGPSPAATAPASATTTVATAPAPPAA
PQIDDYHR
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mRNA from alignment at H-canaliculatus_F_contig15055:59..2123+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig15055.3801.1 ID=mRNA_H-canaliculatus_F_contig15055.3801.1|Name=mRNA_H-canaliculatus_F_contig15055.3801.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2065bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15055:59..2123+ (Hapterophycus canaliculatus Oshoro5f female)
GAGGGGAGGGAGGGGGAGGGGGGGGGGGAGGGAGGACGCGGGAGTGTTGA
GGCCTTCCGTAAGGCATTCGCGGAGAGAGTGGGGGAGGCCGGGGGGCTGA
AGGCGTTAGCGCTGAGCTGGAACGGCGTGGCGAAGCTCGACGCCGCATTC
GTTGCCTGGGTGGGTGAGGTGAGAGGGCGTTCCTGGGGGAGTAGGCGGTA
GGCAGAGATGCACGGGAGTTGGTGTGCAGCGCGCGCGGCATCCGTTTGTG
CCTCGCGTGCTGTTGCTGTTGTTGGTGCTCGATGTGCGCGCGGGTGTCGT
TTACACCAGTCCCCACGGCTTCCAGGAGGTCGCGTAGATCGAAACAACCC
CGAGCGCCCTGAGGGCCTGCTATCCCTTCGTGTTTACCCCCGCACAGCAA
AAACGGGCCACCCGCCATGGACATGCCATGGACGTTTTTGTTGGTTCGAA
GCCGCTTCCGAAATCCGACACCGATGGTATCCCGAGTCTCTCTGTCTCTC
TTTATCTCTTTCGGTCTGCCTCGCTGAAGCTCGCGCACGCCCTGTAAGTT
TTCACGATCCCCCCAGATATTTCAGAGAAAGGCAGAACAATGTCGTAGGA
ACAAGTCCTGAGCTTCGTCGTCCTTGACGCTGCGTGAGGATTCATCGTCT
GTAGCGTTCCAAACAGTGAGGATTCATCGTCTGTAGTTGAGACAAAAAGG
TGAACACGCCATTTCTGCTGCGACACCATCTATGGCGGCGCTGAAGCTGG
CACTCGGGCTCGCCTTTGCCTCTCCTCGCATGTTGCCTCGCGGTGGAATA
CAGACAAAATGCACGTTCCGAAGTCCTCCCCTCCCTCTCCCTGTCCGTCT
CTCTGCCTGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCCCTCCTGTCCTCATAACCCCCCCCC
AAAACCCCAACCTTCCTGTGCAAACAAAACCGCAGTCTGGAGGAAGCACC
GGAACAGACCTGAAGGCCGAGATCCTCCGGGTGGTTTCCCTCGTGGAAAC
CCTGGTCCACGCCCCGCCCCCGCTCTTTGCGGGACTGGGACCGTTGTCAT
CGTCGTCGTCGTCTAAGCCATCACAGGCCCTCGCTCGGCTCTTGTGAGTG
GGTCATTTCGTGGGCTTCGTCCACGGGCGCGCGTACTCCCCTTCTTAGGC
GTACAAGATTGGGGGTCGGGGGGGCGGGGGGGGGGGGAGTCCCAGCCTCC
GTATCCTACCCCGCCCGTCCCTCTTAAGCGTGTGAAAGTTTCCGTCGAGG
GCTGGGTTGTGGCGGTTCCGTAATTTTGCGCGGCGCCCACGGAAAGCCTC
GCGGGCCAGGGAGCAAGCCGGGATGATTACCGTTGTTGTTTTTTGCCCAC
ACGAACATGTCGTGAGGCTGTCTTTTGCACTTTCCATCGCGGGTACACTC
GCTGCGCCAGCTGCTTTTGTTGTTGTGATGGGGCGCTCGCCTCGCGCAGA
AAAACGGCTGTTGCGTGGAAGGAAAAGGAAAAGCAGCACTCGGAATCGTT
CTCGTCGATTTCCGTACGAGGAGGGTTCAGTGCGATCGTTCAAGTTTTGG
CGATTGCCGGGACGGACAAAGTGGCGGCAAATTCTTACCCCCTATCCTCC
GCAACGTCTCCACGACTGCTGGATGTTGCTGCCCGCCGCTGAGAATGCTG
AGAAAATGGGCACACGCGTGTCGTGCGTGCGTGCGTGCGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGGCGGCGAGGGAGAAACTCCTGAGGCAACCGC
CGCCGCGTGCGATGGCAGCACGACGGTAGACCCACATCCCTTCCCCACCC
CGAGCTGTAGCAGCGAACCCATGCACGAGCGAAAAACCAAGATCGAAATG
ACGCCTGTCCTTCAGGGGTGGTGGAGGAGCCAACAGCGGCAGCGCGTACC
GAGGAGCTGGCGAAGGCCCGTCACCCGCAGCAACAGCACCGGCCTCGGCA
ACAACAACGGTAGCAACAGCGCCAGCACCCCCAGCGGCACCGCAGATAGA
CGACTACCACCGGCC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig15055:59..2123+

>mRNA_H-canaliculatus_F_contig15055.3801.1 ID=mRNA_H-canaliculatus_F_contig15055.3801.1|Name=mRNA_H-canaliculatus_F_contig15055.3801.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=948bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15055:59..2123+ (Hapterophycus canaliculatus Oshoro5f female)
GAGGGGAGGGAGGGGGAGGGGGGGGGGGAGGGAGGACGCGGGAGTGTTGA
GGCCTTCCGTAAGGCATTCGCGGAGAGAGTGGGGGAGGCCGGGGGGCTGA
AGGCGTTAGCGCTGAGCTGGAACGGCGTGGCGAAGCTCGACGCCGCATTC
GTTGCCTGGGTGGGTGAGGAGGGGAGGGAGGGGGAGGGGGGGGGGGAGGG
AGGACGCGGGAGTGTTGAGGCCTTCCGTAAGGCATTCGCGGAGAGAGTGG
GGGAGGCCGGGGGGCTGAAGGCGTTAGCGCTGAGCTGGAACGGCGTGGCG
AAGCTCGACGCCGCATTCGTTGCCTGGGTGGGTGAGTCTGGAGGAAGCAC
CGGAACAGACCTGAAGGCCGAGATCCTCCGGGTGGTTTCCCTCGTGGAAA
CCCTGGTCCACGCCCCGCCCCCGCTCTTTGCGGGACTGGGACCGTTGTCA
TCGTCGTCGTCGTCTAAGCCATCACAGGCCCTCGCTCGGCTCTTTCTGGA
GGAAGCACCGGAACAGACCTGAAGGCCGAGATCCTCCGGGTGGTTTCCCT
CGTGGAAACCCTGGTCCACGCCCCGCCCCCGCTCTTTGCGGGACTGGGAC
CGTTGTCATCGTCGTCGTCGTCTAAGCCATCACAGGCCCTCGCTCGGCTC
TTGGGTGGTGGAGGAGCCAACAGCGGCAGCGCGTACCGAGGAGCTGGCGA
AGGCCCGTCACCCGCAGCAACAGCACCGGCCTCGGCAACAACAACGGTAG
CAACAGCGCCAGCACCCCCAGCGGCACCGCAGATAGACGACTACCACCGG
GGGTGGTGGAGGAGCCAACAGCGGCAGCGCGTACCGAGGAGCTGGCGAAG
GCCCGTCACCCGCAGCAACAGCACCGGCCTCGGCAACAACAACGGTAGCA
ACAGCGCCAGCACCCCCAGCGGCACCGCAGATAGACGACTACCACCGG
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