mRNA_H-canaliculatus_F_contig1500.3773.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1500.3773.1
Unique NamemRNA_H-canaliculatus_F_contig1500.3773.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1500.3773.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1500contigH-canaliculatus_F_contig1500:22108..23471 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size499
Cds size297
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1500.3773.1prot_H-canaliculatus_F_contig1500.3773.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1500 22278..23439 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929243.8119986-UTR-H-canaliculatus_F_contig1500:22107..222771622929243.8119986-UTR-H-canaliculatus_F_contig1500:22107..22277Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1500 22108..22277 -
1696845733.121378-UTR-H-canaliculatus_F_contig1500:22107..222771696845733.121378-UTR-H-canaliculatus_F_contig1500:22107..22277Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1500 22108..22277 -
1622929243.86634-UTR-H-canaliculatus_F_contig1500:23439..234711622929243.86634-UTR-H-canaliculatus_F_contig1500:23439..23471Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1500 23440..23471 -
1696845733.1502404-UTR-H-canaliculatus_F_contig1500:23439..234711696845733.1502404-UTR-H-canaliculatus_F_contig1500:23439..23471Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1500 23440..23471 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929243.8277802-CDS-H-canaliculatus_F_contig1500:22277..225181622929243.8277802-CDS-H-canaliculatus_F_contig1500:22277..22518Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1500 22278..22518 -
1696845733.1320572-CDS-H-canaliculatus_F_contig1500:22277..225181696845733.1320572-CDS-H-canaliculatus_F_contig1500:22277..22518Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1500 22278..22518 -
1622929243.8527336-CDS-H-canaliculatus_F_contig1500:23383..234391622929243.8527336-CDS-H-canaliculatus_F_contig1500:23383..23439Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1500 23384..23439 -
1696845733.1410487-CDS-H-canaliculatus_F_contig1500:23383..234391696845733.1410487-CDS-H-canaliculatus_F_contig1500:23383..23439Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1500 23384..23439 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1500.3773.1

>prot_H-canaliculatus_F_contig1500.3773.1 ID=prot_H-canaliculatus_F_contig1500.3773.1|Name=mRNA_H-canaliculatus_F_contig1500.3773.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=99bp
MDQMNPDGDFPQEDIITKRPWGTSLRGEYETAWMGTPSLGLDLGSHSRRR
PDLARRRAWLVSGLFASPEVNEHPLRPRDNDTRQRYKWSADCSALVQS*
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mRNA from alignment at H-canaliculatus_F_contig1500:22108..23471-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1500.3773.1 ID=mRNA_H-canaliculatus_F_contig1500.3773.1|Name=mRNA_H-canaliculatus_F_contig1500.3773.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1364bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1500:22108..23471- (Hapterophycus canaliculatus Oshoro5f female)
GGGAACCAGGTGACGCATAGCGCGGCAGCAGCATGGACCAGATGAATCCA
GACGGGGACTTTCCACAAGAGGACATTATTACCAAGAGGTGAACGAGCGA
GATGAAGTTTTCTGGGTAGCGGCAGCTGTTGGATCCGACCAGAGCTGAGA
GAGCGACGCACCGCACACACCAGCCCAATTCTCCGCCACATTGTTCCCTG
CCGACAGCCCCTCCCCCTTGAACTCTGCGCGAATGCACAAGCAACCATGT
GGGAAAGATGTGCGCGGATTTCATCTCCGCCTTGGGCTTCTCTTTCTGGG
TAGTTTTTCCGTCTTGTAATGCCCCTTTTCTCACGACTTACCCCTCACAG
ATCTACATGTAATGTGGTCCTGTTGAAATCGGGAGGAGAGAGACGAGACA
GAACAAAGAGCGCCCTGGTTGATTCATCCGATGGACAGGACAGGATCCGC
CATCCCGCGCCCTCCCCGAGAAACCGCGATACTCCGTGCGGTGCTGCGTT
CCTCGACATAGCCCCTTTCCCCGTCCCTACCCACCTATCATAGCGTAAGG
GTGCCTCTTCACTCGTCTCTGTTTCCCAGAAAGATGCTCTTCTCTAGACA
CCGCCGGCACCGCTCGCATGGGCATGTGAACCCTTCTGGTATGTACCTGC
ATTCCTGCATCCCTAGGCTTACCGTCGGTAGCACCACAGACTACCGAGAG
GGACCACAGCTTCGGTTTTGCGAGACTTTGTGCATCGCTCCGATTACTGA
GCGCTGCTTCCGGTGACTGGATGCTCTCTTTTTACGGAGGCTGGCTGTCC
GCGATGACGGCGCCGGGTTGACCCTAGGGTCCACGGGGAGATCGGTTGGA
AGAAAATCAACTTCCTTTTTTCATCTCTAAAAAGAAAAGAAAACGCCCAC
GGACCGTCCTTCACACGAAGGTCCGGACGGGTGGGGCGCTCGCTTTCCCA
CAGGCCGTGGGGTACTTCGTTGCGCGGTGAGTATGAAACCGCATGGATGG
GCACACCGTCTCTCGGTTTGGACCTCGGGAGCCACAGCAGGAGGAGACCT
GATCTGGCGCGTCGGCGGGCGTGGTTGGTTTCGGGCCTTTTCGCTTCCCC
TGAAGTCAACGAGCACCCTCTGCGCCCTCGAGACAACGATACGCGCCAGC
GGTACAAGTGGTCGGCGGACTGTTCCGCTCTCGTTCAATCTTGAAAGGAA
ATACTGGCTGTCGTCGGTTCCCTGAAGAAGGGGGACGCACCTCAGACGAG
ACGTGGCCGACAGCTTTGCGTTACGCGCGGCGAGGGATTCTGGCGGCCCG
TCGCGGGGGCGTTTGTGTTGAGGCGAGGCCGAGGAACAGAGTCTTCCCCA
GGCGAAGCAACGGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1500:22108..23471-

>mRNA_H-canaliculatus_F_contig1500.3773.1 ID=mRNA_H-canaliculatus_F_contig1500.3773.1|Name=mRNA_H-canaliculatus_F_contig1500.3773.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=594bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1500:22108..23471- (Hapterophycus canaliculatus Oshoro5f female)
ATGGACCAGATGAATCCAGACGGGGACTTTCCACAAGAGGACATTATTAC
CAAGAGATGGACCAGATGAATCCAGACGGGGACTTTCCACAAGAGGACAT
TATTACCAAGAGGCCGTGGGGTACTTCGTTGCGCGGTGAGTATGAAACCG
CATGGATGGGCACACCGTCTCTCGGTTTGGACCTCGGGAGCCACAGCAGG
AGGAGACCTGATCTGGCGCGTCGGCGGGCGTGGTTGGTTTCGGGCCTTTT
CGCTTCCCCTGAAGTCAACGAGCACCCTCTGCGCCCTCGAGACAACGATA
CGCGCCAGCGGTACAAGTGGTCGGCGGACTGTTCCGCTCTCGTTCAATCT
TGAGCCGTGGGGTACTTCGTTGCGCGGTGAGTATGAAACCGCATGGATGG
GCACACCGTCTCTCGGTTTGGACCTCGGGAGCCACAGCAGGAGGAGACCT
GATCTGGCGCGTCGGCGGGCGTGGTTGGTTTCGGGCCTTTTCGCTTCCCC
TGAAGTCAACGAGCACCCTCTGCGCCCTCGAGACAACGATACGCGCCAGC
GGTACAAGTGGTCGGCGGACTGTTCCGCTCTCGTTCAATCTTGA
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