mRNA_H-canaliculatus_F_contig1496.3733.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1496.3733.1
Unique NamemRNA_H-canaliculatus_F_contig1496.3733.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1496.3733.1 vs. uniprot
Match: A0A6H5JIL0_9PHAE (PlsC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JIL0_9PHAE)

HSP 1 Score: 426 bits (1096), Expect = 1.310e-138
Identity = 207/251 (82.47%), Postives = 229/251 (91.24%), Query Frame = 2 
Query:    2 YGLLFATQAWLTALLMFPLCFLAALVSPIFDWRRMRPPTLVAILWGRLALWNMGVRPKVEGAELLPPREEAVVFVANHASYLDIPVTNFLPRMCKYLMKAELLWLPIVGWKAVLAKDIFVHRQTSATFRQLLRVTTRALKTGNSIMTFPEGTRSRDGKLGQFKRGPFTMAQQAGARIVPVTITGVTEAMPPFAMAPLRKPQNVRLVIHPPISTKDRPIKEVMEEARKAVGDGLEEWQRPKPRVAATEASSA 754
            YGLLFATQAW TALLMFPLC L+ALV+PIFDWRRMRPPT VA+LWGRLALWNMGVRPKVEGAELLPPR EAVVFVANH SYLDIPVTN LPRMCKYLMKAELLWLPIVGWKAVLA+DIFVHR TS TFRQLLR TTR LK GNSIMTFPEGTRSRDG+LG+FKRGPFTMAQQAG R+VP+TITGVTEAMPPFAMAPL KP++VRLV+HP IST+ +P+K+++ EARKAV DGLE+WQ+P+P+V A+    A
Sbjct:   52 YGLLFATQAWFTALLMFPLCLLSALVAPIFDWRRMRPPTAVAVLWGRLALWNMGVRPKVEGAELLPPRGEAVVFVANHGSYLDIPVTNCLPRMCKYLMKAELLWLPIVGWKAVLARDIFVHRGTSTTFRQLLRSTTRTLKAGNSIMTFPEGTRSRDGRLGKFKRGPFTMAQQAGVRVVPLTITGVTEAMPPFAMAPLCKPRSVRLVVHPAISTEGKPVKDLIAEARKAVSDGLEDWQKPRPKVDASSNGDA 302
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1496.3733.1 vs. uniprot
Match: A0A835YT11_9STRA (PlsC domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT11_9STRA)

HSP 1 Score: 234 bits (597), Expect = 2.120e-63
Identity = 122/253 (48.22%), Postives = 166/253 (65.61%), Query Frame = 2 
Query:    2 YGLLFATQAWLTALLMFPLCFLAALVSP-------IFDWRRMRPPTLVAILWGRLALWNMGVRPKVEGAELLPPREEAVVFVANHASYLDIPVTNFLPRMCKYLMKAELLWLPIVGWKAVLAKDIFVHRQTSATFRQLLRVTTRALKTGNSIMTFPEGTRSRDGKLGQFKRGPFTMAQQAGARIVPVTITGVTEAMPPFAMAPLRKPQNVRLVIHPPISTKDRPIKEVMEEARKAVGDGLEEWQRPKPRVAAT 739
            YGLL+A  + LT LL+FPL  +   ++        + D +R+R  +    +W RL+L +MG+RPKVEG   LPP  E VVF+ NH S+LD+PVT FLPR+ KYL KAEL W+P++GWKAVLA DI V R   ++FR+L+   + +L+ GN ++ FPEGTRSR G L  FK+GPF MAQ+AG R+VP++I GV E MPP A+APL KP  V +VIH P+      ++  M  AR A+  GL  ++     +AAT
Sbjct:  119 YGLLYAITSTLTGLLVFPLVAVVRTLNGRWHRCTRLVDRKRLRVASWFGSVWCRLSLLSMGIRPKVEGLHNLPPPTETVVFLPNHTSFLDVPVTGFLPRLVKYLTKAELAWMPLIGWKAVLAGDILVRRADKSSFRRLIADASASLRAGNCLVAFPEGTRSRSGALAPFKKGPFLMAQKAGVRVVPISIAGVAEVMPPRALAPLSKPA-VTIVIHAPVDPAVEGVEGAMRSARAAIASGLPRYEHVSGAMAAT 370
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1496.3733.1 vs. uniprot
Match: A0A7S3Y5W9_HETAK (1-acyl-sn-glycerol-3-phosphate acyltransferase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y5W9_HETAK)

HSP 1 Score: 193 bits (490), Expect = 1.860e-50
Identity = 104/242 (42.98%), Postives = 154/242 (63.64%), Query Frame = 2 
Query:    5 GLLFATQAWLTALLMFPLCFLAALVSPIFDWRRMRPPTLVAILWGRLALWNMGVRPK-VEGAELLPPREEAVVFVANHASYLDI-PVTNFLPRMCKYLMKAELLWLPIVGWKAVLAKDIFVHRQTSATFRQLLRVTTRALKTGNSIMTFPEGTRSRDGKLGQFKRGPFTMAQQAGARIVPVTITGVTEAMPPFAMAPLRKPQNVRLVIHPPISTKDRPIKEVMEEARKAVGDGLEEWQRPKP 724
            G  F     LT  L+FP   L+ L +  FD RR R        W +L++ ++  RPK + GAE LP   E V+++ANH S+LDI  ++ FLPR  KY+ K E+L +P++GW   +A  I V R    +  + ++ T ++LK GNS+  FPEGTR++ G++G FK+GPFT+A++AGAR+VP+++  VT+  P +A+ PL +P +VR+VIHPPI  KD    E+ME A  A+  GL ++QRP P
Sbjct:  102 GFFFLFNTMLTCALLFPFTVLSYLWAMAFDRRRRRAVDNCVHWWAKLSMLSVFYRPKEIVGAEHLPDDAEGVLYLANHTSFLDILTLSGFLPRNFKYVSKVEILKIPLIGWAMQMAAHIAVRRMDRRSQIETVKSTIQSLKDGNSVTMFPEGTRTKTGRMGDFKKGPFTIAKKAGARVVPISLCNVTKWFPSWAVMPLGRPTDVRVVIHPPIDPKDLTEAELMERAFAAIESGLPDFQRPLP 343
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1496.3733.1 vs. uniprot
Match: A0A0G4G8W7_9ALVE (PlsC domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4G8W7_9ALVE)

HSP 1 Score: 187 bits (475), Expect = 1.510e-47
Identity = 102/250 (40.80%), Postives = 155/250 (62.00%), Query Frame = 2 
Query:    5 GLLFATQAWLTALLMFPLCFLAALVSPIFDWRRMRPPTLVAILWGRLALWNMGVRPKVEGAELLPP-REEAVVFVANHASYLDIPVTN-FLPRMCKYLMKAELLWLPIVGWKAVLAKDIFVHRQTSATFRQLLRVTTRALKTGNSIMTFPEGTRSRDGKLGQFKRGPFTMAQQAGARIVPVTITGVTEAMPPFAMAPLRKPQNVRLVIHPPISTKDRPIKEVMEEARKAVGDGLEEWQRPKPRVAATEAS 748
            GL++ +  +L A   +PL   A LVS   + ++     +V  +W R  LWN  + PKVEG E LP  + E ++ VANH+S+LDIPV + FLP   KY+ K E+L +P++GW   +A+ + +HR    +  +  R T   LK G S+  F E TRSRDG++ +FK G   MA++AG R++PV++ G+  + PP A+ P+  P++ RLVIHPPI T+ R + +V+ EA +AV +GL E Q+PK +  A + S
Sbjct:  202 GLVWMSLVFLWAAFWYPLLICAFLVSEGVNDKKRSLVDMVVAVWSRFCLWNATLNPKVEGLENLPKDKSEPLLIVANHSSFLDIPVLSAFLPIRFKYISKVEVLSIPLLGWAMQMARHVAIHRGDRRSSLKTFRETVNLLKEGASVCAFAEETRSRDGRVRKFKPGTLKMAEKAGVRVLPVSLCGLHSSFPPDALLPVAVPRDARLVIHPPIETRGRSVDDVVNEAWEAVVEGLPEAQKPKQQTVADDLS 451
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1496.3733.1 vs. uniprot
Match: A0A7S2UXA9_9STRA (1-acyl-sn-glycerol-3-phosphate acyltransferase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXA9_9STRA)

HSP 1 Score: 182 bits (463), Expect = 3.480e-47
Identity = 93/199 (46.73%), Postives = 133/199 (66.83%), Query Frame = 2 
Query:  122 VAILWGRLALWNMGVRPKVEGAELLPPREEAVVFVANHASYLDI-PVTNFLPRMCKYLMKAELLWLPIVGWKAVLAKDIFVHRQTSATFRQLLRVTTRALKTGNSIMTFPEGTRSRDGKLGQFKRGPFTMAQQAGARIVPVTITGVTEAMPPFAMAPLRKPQNVRLVIHPPISTKDRPIKEVMEEARKAVGDGLEEWQR 715
            V  +W RL++ +M  +PKVEG E LPP++E VVF+ANH S+LDI  ++ FLPR  KY+ K E+L +P++GW    A  I + R + A+  Q+ R   ++LK GNS+  FPEG+R+RDG++   K+GPFT+A++AG RIVPV++  +    PP A  PL  P++  L IHPPI TK +   EVME  R A+  GL +WQ+
Sbjct:  149 VVSIWARLSMLSMFYKPKVEGLENLPPKDETVVFMANHQSFLDIFTLSGFLPRRFKYISKVEILRIPLIGWAMNFAGHIAIQRASVASQIQVFRDAIKSLKDGNSVCIFPEGSRTRDGRMLPLKKGPFTIAKRAGVRIVPVSLGELFRYNPPSAWLPLGIPKDAVLKIHPPIETKGKSEAEVMELVRIAINSGLPDWQK 347
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1496.3733.1 vs. uniprot
Match: A0A7S1U818_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U818_9STRA)

HSP 1 Score: 180 bits (457), Expect = 1.250e-46
Identity = 96/209 (45.93%), Postives = 136/209 (65.07%), Query Frame = 2 
Query:  122 VAILWGRLALWNMGVRPKVEGAELLPPREEAVVFVANHASYLDI-PVTNFLPRMCKYLMKAELLWLPIVGWKAVLAKDIFVHRQTSATFRQLLRVTTRALKTGNSIMTFPEGTRSRDGKLGQFKRGPFTMAQQAGARIVPVTITGVTEAMPPFAMAPLRKPQNVRLVIHPPISTKDRPIKEVMEEARKAVGDGLEEWQRPKPRVAATEA 745
            V  LW   A+  MG + +V G E LPP  E ++ V NH S+LDI  ++ ++PR  KY+ K E+L LP++GW   +AK I + R + A+  + L+    ++K GNS++TF EGTRS+DG+L +FK+GPFTM ++AG RIVPV+I G+ +  P +A  PL  P+ V L IHPPI TK R   +V+EE   AV  G+ E QRP PR ++ EA
Sbjct:  125 VVRLWAWAAMRLMGYKAEVIGLENLPPASEPIMVVPNHTSFLDIFTISAYVPRNLKYISKVEILRLPLIGWAMRMAKHIAIRRSSRASQIRTLKEAVDSMKDGNSLVTFAEGTRSKDGRLMRFKKGPFTMTKRAGVRIVPVSIRGLYKWHPKWAWLPLATPKGVTLKIHPPIETKGRNADDVLEETYNAVLSGMPEDQRPLPRKSSAEA 333
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1496.3733.1 vs. uniprot
Match: A0A8J5X9N9_DIALT (PlsC domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5X9N9_DIALT)

HSP 1 Score: 177 bits (450), Expect = 8.390e-46
Identity = 101/240 (42.08%), Postives = 140/240 (58.33%), Query Frame = 2 
Query:    2 YGLLFATQAWLTALLMFPLCFLAALVSPIFDWRRMRPPTLVAILWGRLALWNMGV-RPKVEGAELLPPREEAVVFVANHASYLDI-PVTNFLPRMCKYLMKAELLWLPIVGWKAVLAKDIFVHRQTSATFRQLLRVTTRALKTGNSIMTFPEGTRSRDGKLGQFKRGPFTMAQQAGARIVPVTITGVTEAMPPFAMAPLRKPQNVRLVIHPPISTKDRPIKEVMEEARKAVGDGLEEWQR 715
            Y + F     L+  + +PL  +A+  S +FD +R R    V  LW RL L      R +VEGAE LP R +  +F  NH S+LDI  ++ FLPR  KY+ K E+L +P++GW   LA  I + R    +     R +   LK GN+++TFPEGTRS  G LGQFK GPF MA  AG  +VP++I     AMP  ++ P+R+   +R+V+HPPI+T+ R   ++  EAR AV  GL EW R
Sbjct:   82 YSVFFLVLNVLSLCVAYPLLAVASAWSFLFDRKRRRAIDAVVALWARLCLTLFFFSRVRVEGAEHLPARGQPALFTPNHCSFLDIFALSGFLPRPLKYVSKVEILRIPLIGWAMQLAGHIALRRADRKSQLATFRDSVACLKDGNNLVTFPEGTRSPTGVLGQFKAGPFKMAATAGVPVVPISIVNTQYAMPVSSLLPIRRASGMRIVVHPPIATQGRDSADLCAEARAAVSSGLPEWMR 321
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1496.3733.1 vs. uniprot
Match: A0A7S2B9X1_9EUKA (1-acyl-sn-glycerol-3-phosphate acyltransferase (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2B9X1_9EUKA)

HSP 1 Score: 171 bits (433), Expect = 1.360e-44
Identity = 91/209 (43.54%), Postives = 126/209 (60.29%), Query Frame = 2 
Query:   11 LFATQAWLTALLMFPLCFLAALVSPIFDWRRMRPPTLVAILWGRLALWNMGVRPKVEGAELLPPREEAVVFVANHASYLDIPV-TNFLPRMCKYLMKAELLWLPIVGWKAVLAKDIFVHRQTSATFRQLLRVTTRALKTGNSIMTFPEGTRSRDGKLGQFKRGPFTMAQQAGARIVPVTITGVTEAMPPFAMAPLRKPQNVRLVIHPPI 634
            LF+    L  L ++P    A L   +FD +R R    V   W R  +   G + +V G E LPP +E V++  NH S+LDI V + +LPR CKY+ K E+L +P++GW    AK I + R   A+  + L+     LK GNS++TFPEGTRS+DG+L  FK+G FTMA +AG R+VP+TI G     PP A  PL  P+ VR++IHPP+
Sbjct:   26 LFSVVTVLVLLAVYPFVLSAVLFGILFDNKRRRFVDRVVQAWARGTMVFFGAKIQVFGLENLPPIDEPVMYTPNHCSFLDIFVLSGYLPRPCKYISKIEILRIPLIGWAMAFAKHIAIRRMDRASQLKTLKDAIETLKDGNSLVTFPEGTRSKDGRLLDFKKGAFTMASRAGVRVVPITIVGTHLYQPPGAFVPLAVPRGVRIIIHPPL 234
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1496.3733.1 vs. uniprot
Match: M1V4N2_CYAM1 (1-acylglycerol-3-phosphate O-acyltransferase n=1 Tax=Cyanidioschyzon merolae (strain NIES-3377 / 10D) TaxID=280699 RepID=M1V4N2_CYAM1)

HSP 1 Score: 171 bits (433), Expect = 5.610e-43
Identity = 97/234 (41.45%), Postives = 137/234 (58.55%), Query Frame = 2 
Query:   11 LFATQAWLTALLMFPLCFLAALVSP---IFDWRRMRPPTLVAILWGRLALWNMGVRPKVEGAELLPPREEAVVFVANHASYLDIPVTNFLPRMCKYLMKAELLWLPIVGWKAVLAKDIFVHRQTSATFRQLLRVTTRALKTGNSIMTFPEGTRSRDGKLGQFKRGPFTMAQQAGARIVPVTITGVTEAMPPFAMAPLRKP-QNVRLVIHPPISTKDRPIKEVMEEARKAVGDGL 700
            L  T AW       PL  +  ++ P   I D  R R    +A+LW RL++ + G+ P+V G E L P +  V++V NH SYLDI    FL R  K++ K  +  +PI+GW   +A+ I + R +     ++ R     L+ G S++ FPEGTRS+DG L  FK+GPF +A+QAG  IVP+TITG  E MPP+A+APLR P Q + L IHP I T D  + +++E AR A+   L
Sbjct:  138 LLVTFAW-----SLPLFIIMLILYPFVLILDPYRARVYDWIAMLWMRLSMLSTGIHPRVVGTENLLPPDATVLYVCNHNSYLDIYTVAFLGRFFKFVSKRSIFAIPIIGWAMGMARQIGIERDSRRDQLRVFREMVSRLEHGVSLLLFPEGTRSKDGTLRAFKQGPFRVAKQAGVPIVPLTITGTAEVMPPWALAPLRWPKQRITLTIHPAIQTADHSVTDLIEAARTAIASAL 366
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1496.3733.1 vs. uniprot
Match: A0A7S4B0Q0_CHRCT (1-acyl-sn-glycerol-3-phosphate acyltransferase n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B0Q0_CHRCT)

HSP 1 Score: 169 bits (428), Expect = 9.910e-43
Identity = 91/217 (41.94%), Postives = 135/217 (62.21%), Query Frame = 2 
Query:   74 LVSPIFDWRRMRPPTLVAILWGRLALWNMGVRPKVEGAELLPPREEAVVFVANHASYLDI-PVTNFLPRMCKYLMKAELLWLPIVGWKAVLAKDIFVHRQTSATFRQLLRVTTRALKTGNSIMTFPEGTRSRDGKLGQFKRGPFTMAQQAGARIVPVTITGVTEAMPPFAMAPLRKPQNVRLVIHPPISTKDRPIK-EVMEEARKAVGDGLEEWQRP 718
            L S +FD  R R    +  +W R  L  +    +VEG E LPPR+EAV++V NH S+LDI  ++ +LPR  KY+ K E+L +P +GW    AK I + R   A+  Q +R     LK G+S++TFPEGTRS+DG+L +FK+GPF+MA +A  R+VP++I G     PP +  P+ +P+ V+LV+HPP+    +  + E +E+AR AV   L +  +P
Sbjct:  112 LYSLVFDRSRRRACDWIVQIWARCTLSLLFSDIRVEGLENLPPRDEAVMYVPNHCSFLDIFALSGYLPRRFKYISKIEILRIPFIGWAMQFAKHIAIKRMDRASQVQTVRDAVDCLKAGSSLVTFPEGTRSKDGRLMEFKKGPFSMAAKAQVRVVPISIIGTHLFQPPGSAFPMARPRGVKLVVHPPLDAPGKKKEQETLEQARAAVLSALPKSMQP 328
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1496.3733.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JIL0_9PHAE1.310e-13882.47PlsC domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A835YT11_9STRA2.120e-6348.22PlsC domain-containing protein n=1 Tax=Tribonema m... [more]
A0A7S3Y5W9_HETAK1.860e-5042.981-acyl-sn-glycerol-3-phosphate acyltransferase n=1... [more]
A0A0G4G8W7_9ALVE1.510e-4740.80PlsC domain-containing protein n=1 Tax=Chromera ve... [more]
A0A7S2UXA9_9STRA3.480e-4746.731-acyl-sn-glycerol-3-phosphate acyltransferase n=1... [more]
A0A7S1U818_9STRA1.250e-4645.93Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A8J5X9N9_DIALT8.390e-4642.08PlsC domain-containing protein n=1 Tax=Diacronema ... [more]
A0A7S2B9X1_9EUKA1.360e-4443.541-acyl-sn-glycerol-3-phosphate acyltransferase (Fr... [more]
M1V4N2_CYAM15.610e-4341.451-acylglycerol-3-phosphate O-acyltransferase n=1 T... [more]
A0A7S4B0Q0_CHRCT9.910e-4341.941-acyl-sn-glycerol-3-phosphate acyltransferase n=1... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1496contigH-canaliculatus_F_contig1496:19980..25223 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score409.1
Seed ortholog evalue1.5e-111
Seed eggNOG ortholog2880.D8LTF6
KEGG rclassRC00004,RC00037,RC00039
KEGG koko:K00655
KEGG ReactionR02241,R09381
KEGG Pathwayko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110
KEGG ModuleM00089
EggNOG free text desc.1-acylglycerol-3-phosphate O-acyltransferase activity
EggNOG OGsCOG0204@1,KOG2848@2759
EC2.3.1.51
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01004
Hectar predicted targeting categoryother localisation
Ec32 ortholog description1-acyl-sn-glycerol-3-phosphate acyltransferase
Ec32 orthologEc-02_006160.1
Exons4
Model size2927
Cds size747
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1496.3733.1prot_H-canaliculatus_F_contig1496.3733.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1496 22114..25177 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929237.733064-UTR-H-canaliculatus_F_contig1496:19979..221131622929237.733064-UTR-H-canaliculatus_F_contig1496:19979..22113Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1496 19980..22113 -
1696845730.187505-UTR-H-canaliculatus_F_contig1496:19979..221131696845730.187505-UTR-H-canaliculatus_F_contig1496:19979..22113Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1496 19980..22113 -
1622929237.8360002-UTR-H-canaliculatus_F_contig1496:25177..252231622929237.8360002-UTR-H-canaliculatus_F_contig1496:25177..25223Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1496 25178..25223 -
1696845730.2457087-UTR-H-canaliculatus_F_contig1496:25177..252231696845730.2457087-UTR-H-canaliculatus_F_contig1496:25177..25223Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1496 25178..25223 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929237.7484539-CDS-H-canaliculatus_F_contig1496:22113..223081622929237.7484539-CDS-H-canaliculatus_F_contig1496:22113..22308Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1496 22114..22308 -
1696845730.2013836-CDS-H-canaliculatus_F_contig1496:22113..223081696845730.2013836-CDS-H-canaliculatus_F_contig1496:22113..22308Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1496 22114..22308 -
1622929237.7692363-CDS-H-canaliculatus_F_contig1496:22860..230091622929237.7692363-CDS-H-canaliculatus_F_contig1496:22860..23009Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1496 22861..23009 -
1696845730.2131517-CDS-H-canaliculatus_F_contig1496:22860..230091696845730.2131517-CDS-H-canaliculatus_F_contig1496:22860..23009Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1496 22861..23009 -
1622929237.8008947-CDS-H-canaliculatus_F_contig1496:23534..236971622929237.8008947-CDS-H-canaliculatus_F_contig1496:23534..23697Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1496 23535..23697 -
1696845730.2233405-CDS-H-canaliculatus_F_contig1496:23534..236971696845730.2233405-CDS-H-canaliculatus_F_contig1496:23534..23697Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1496 23535..23697 -
1622929237.8154783-CDS-H-canaliculatus_F_contig1496:24937..251771622929237.8154783-CDS-H-canaliculatus_F_contig1496:24937..25177Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1496 24938..25177 -
1696845730.2343695-CDS-H-canaliculatus_F_contig1496:24937..251771696845730.2343695-CDS-H-canaliculatus_F_contig1496:24937..25177Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1496 24938..25177 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1496.3733.1

>prot_H-canaliculatus_F_contig1496.3733.1 ID=prot_H-canaliculatus_F_contig1496.3733.1|Name=mRNA_H-canaliculatus_F_contig1496.3733.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=249bp
MFPLCFLAALVSPIFDWRRMRPPTLVAILWGRLALWNMGVRPKVEGAELL
PPREEAVVFVANHASYLDIPVTNFLPRMCKYLMKAELLWLPIVGWKAVLA
KDIFVHRQTSATFRQLLRVTTRALKTGNSIMTFPEGTRSRDGKLGQFKRG
PFTMAQQAGARIVPVTITGVTEAMPPFAMAPLRKPQNVRLVIHPPISTKD
RPIKEVMEEARKAVGDGLEEWQRPKPRVAATEASSAPLPPSSAAPPPQ*
back to top

mRNA from alignment at H-canaliculatus_F_contig1496:19980..25223-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1496.3733.1 ID=mRNA_H-canaliculatus_F_contig1496.3733.1|Name=mRNA_H-canaliculatus_F_contig1496.3733.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=5244bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1496:19980..25223- (Hapterophycus canaliculatus Oshoro5f female)
GTACGGGTTACTGTTTGCGACGCAGGCGTGGTTGACCGCTTTGCTGATGT
TCCCCCTGTGCTTCTTGGCGGCTCTGGTGTCCCCGATCTTCGACTGGCGA
CGGATGCGACCGCCGACGCTTGTGGCCATTCTGTGGGGGCGGCTTGCGCT
GTGGAACATGGGGGTCAGGCCGAAGGTGGAAGGGGCGGAGCTACTGCCGC
CGAGAGAGGAGGCGGTGGTGTTCGTAGCGAACCACGCTTCGTATCTGGAT
ATCCCGGTCACCAATTTCTTGCCTCGGATGTGCAAGGTAACTTGGTGTGA
TGTGGTATTATCTTGCTCGTTGTACACCTGGGCGAGCCTCGACCCTTGTT
GGAGAAGAGATCCACGTGCTACCGCCGTGTTTGAAACTTGCTACCGGAGG
TGGGGTCGTGTTTTTCGGAGATGTATCGCGACGCGTGCCAAGCGGGGTGG
AGGCGAACTTGATCTAGCCTAAAGGGAAAAGGGTTGCTGAGTGCCATCGT
GGACACTTAAACAGCATCCAGCGTTGGTCGCGCTTCCCTCGAGCCACCGG
GTATGGAGCTACAGATCCGGAAAGACTATATGTCCCAATTTTCTAGCAGG
GCGTGGATGTGTGCTCTTATCTTTGGTCCTAGTTTTCTCGTTTGATGCTA
AATCCCGGCTTCCGCTTGAAGACGAAACATGTATTCTGCGAAGAACATGC
GTATGGAAGAGCATAAGGGTGTGCATTTTTATCTTTCTGTATCTATGTAT
CGGTGAAGGTGGGGAGAGAATCAGAGGGGAGGGCAAGGAACCGAGCTCGC
TTGTGCCTCTTGCCTCCACTGCAAGTCTCTCTGTGACGTACGCACAGCGT
GAAGGAAACTATTTTCGCTTGAGATGAGGTGCCTATTCCCCCGCCGGCCC
ACCTCCGACGTTTTGAGGTTCTATTTCCAAATTTTGCTTTCATTCCCAAG
TCCCCCGCACTCCGGGCTGGTTAAGGGCCATTTGCGGGGATGGTCGTGCC
TTCGCTACCACTCACGCACTGGGTATATCGATACATGGGTGCGTGTGGTG
TCCTTCCGTACCTCCCTATCACTCGTCAGCTCTTCTTCGCAGCACCAAAA
CGTGTGGATGCATGGCGTACGAACCACCACGTCGACGCCTGACAGCAATG
AGTCCACCTGCGACACCAATCGTACACCCGTCGCTGAACCCTTTCGACCC
CTTTGTCGTTTCTTTCCGCAGCTGTCAAATGTAGGCTGAAGCGACTGTGC
AAAACCCGATTCAAGCGTGGTACACCCGACACACCCACACACATCTCTCC
ACCGAGAGAGCTTGCTGTCAACGGACACATTCCTTGTGTGTCATTGAACG
CCACACCTCTCTCAGATGTTCGTATCTTGATCTTCATCTGCGGGACAAGG
TGTCGCCGATTCCGCTTGCGGATACATAGGGTTGCGCAAAGAATTGTGTT
GTTATTTCTCATTTCTTCCGCCCCTTCTCTCTTGTGCCGCTCGTGTGTGT
ACTGTTTGGACTCTGCGTTTCTTCAGTACCTCATGAAGGCGGAGCTTCTT
TGGCTGCCTATCGTGGGGTGGAAAGCGGTGTTGGCCAAGGACATCTTCGT
GCATAGGCAGACCTCGGCTACATTCCGCCAACTGCTCAGGGTAACCACCC
GGGCGCTCAAGACGGGGAACTCCATCATGACCTTCCCTGGTACGGTGTGG
AACTTATCGTAGCCGCATCTGTCGTGTCCCGGAATCGTCTCTTCCAGCAT
GTTTCAGCTTTGGGGTTTCGGCGTCTTTTTAGTGGTTGGGTCTAACACAC
ATTCTGAGGAGGTCGTGTTTTTGTTTCTAGGAATGGGTTGGGTCTGGACT
TTTCTTTCGACCATTCGACCTGGAAGCTAGCAATCGGCCAGGCAAGTCAC
GGCTTGCTCGCATCTGTACCAAGTACAGTGTGGATGCACTTCGACGAGGT
GATATCCACGCGTTGTGTTCGGTACGTTGTGATACCTTTAGCTTTGGCTG
CAAACCCACAGCTGATGTCGTTCTGTTGCTGGAGCTGCATCTACTACGCT
CTCGCTGATGTCTCTACCTTGATGACCATCGTGACCTCCCTCATTTTGTC
CAACGCTCCTGTTTGCCGCTGATGCCGTCGTTCCCTTGTCTTCCCCACCC
GACCCTCTCCGCGCCATCGTGTCGCCGTCGCTATCACCAACCTGATTCTT
CGTACCCCCGCCAGAGGGAACTCGAAGCCGAGATGGGAAGTTGGGGCAGT
TCAAACGCGGGCCTTTTACGATGGCGCAGCAGGCAGGAGCAAGGATAGTC
CCGGTGACCATCACGGGAGTGACCGAAGCGATGCCGCCATTTGCCATGGC
GCCTTTGCGCAAGGTGAGCGACCTTGTTCAACGCTCCGGTGTGTCCTACC
TTTCATTCGCCTCCGTGAGGGCTGGTTGGTTGGCCACGGTGGGGGTGGAG
AGGCCCAACTGCGAGAAGCAGGCCCGGTTCCTCGCTTTTGTTTAGGCAAC
GGTGGAACCCCATGCTGGGACCACAGTAAAAGCTTTTTGATTTTTCTTCA
TCTTCTTGTGAACATTTCCCCCCTGCTTCCAGGCCACCTGTGATGCAAAG
TTATTCCTCGCCCCCAGTATCTCTTTGCGTGGCAACACCTCGGATCGCGC
AGCATTGGCAGTGTTGGAAGTGCTCCGACCCTGTTGCCAAGCGGCGCTGT
TTCGCATGTTCCGGATCGCTTTACCATTCCGTCGCCGTTGACGGAAGTCG
CCCGTTCGTTCTACTCCTGAGTATCTTTTTTCTTTCTTCAGCTGTCCCTG
GGTCTCTGTACGCCCGCGCGCCCGTCCACCGCCTCTGCGTTGTCTGACTG
CTTTGATACCCGCCCCTTTGGTCGATCCGTACTTGGCGCTGCCGTTCCGA
CCTTCGGTGGAACAGCCTCAAAACGTCCGGCTCGTCATCCACCCACCCAT
CTCCACCAAGGACAGACCAATAAAGGAGGTTATGGAGGAGGCTCGAAAAG
CCGTGGGCGACGGGTTGGAGGAATGGCAAAGACCGAAGCCGCGTGTTGCG
GCCACCGAAGCGTCGTCGGCACCGCTCCCCCCGTCGTCGGCCGCACCGCC
ACCTCAATGATTTATTTTGCATTGGTGTGAGTGCCATGCTGGTCATGCTG
GTCCGGCTGCATCTATCTCTAGCCCAACGCTGTGATACGTCGCCGTTTTT
GTTGTCTTCGTATGATACGGGTAAGTGCTGTTCCTTCGCCCGCCTTCTGA
CAAGGAAAGGATGGATGAAGCGTGACAGATGTGGAGCAGGTTTTTTGTCG
ACTCCACCGGAAGGATACAGATCGTTGAGAGTATTGTGCAGGTGTAGGTT
TGCAAAGGCTGTTGTTGTAATGTAAGGTTGTTTGATGGAAGGTTGTTTCA
TGGGTGTGATGTATTTTTACGAGGCAGTTGTTTCGAACACAGGGGCTGGG
CCGCGTCACGGCGGCGGGTTGACTGTTCTTCCTGTTGCTCTTACTTTGAA
GTACTACCATAATACTATACCAGGTAGTATTTTGTTATTTCTCTCTCTTG
AGCTCTTCTACGACGTTTCTGCAGAATGGCGTGTGCACTGGATTATTTTG
TCTTCGGTGTGGGACAGGCAATGTGTTTCCTCCGCCGCACTCTCCGTTTT
GTTTTTTTGTCGTCTCGCTTGAGCATGTTCGTGCATGCTTTGGAAGACTC
ACACATGACTACACGCGCACGAACATGCACAAGATGTAATGCGAAGGTAG
GGGTGGATGTTTTCTGATAGCGATTGGCACGATCACCCTTTTCATGGTGT
TCAATGGCCTTGCGCTCTGCATGTCTAGGTGCCCGAACTGCTGATGCCTC
TGACTCCGAGACACATCCTCGTTCTCCCCGGAAAGAGCAAGAGAAGACGG
AAGAGACGCTCGAAACACGAAGAAAATTCTGGCGGTATGGCGAGGTGCCG
AGGAAGGAGGACGTCGTCGCTGCTAACGATTGTAGCCACTTCGAGAGGCA
GCGTGTAGACCTGAAACTGCGAATGCTGGATGCTCTCTCGTGTAGCCACC
ATGCCTGAGAAGATCGTAATCGTTTTTTCTTTGATGGTAAATTGGTGTGG
CGCACGATAGGGCCGTGCGAACCGGTCGGTGATGTTTGACGATAGTTGTT
TTCACACGTGGAACGTGCTGTGTAATGCCTTTTGAACCTTCTTCCAGTCG
GCCGAACACGGGAAGTCGAAGAAATTGCTGAGTTCGTCATGGAAATCAGG
AGGGAGGTTCAGAGAAAGGAGGATTTGCGTGCACTATCAGATCGAGAGTC
ACATCAGTCAAGAGTGGGCCCGGCTCCAGTGGCTCTTCGAGCGACGTAAA
ACCTCTGGAGGTTTAGCCAATCAGCTATGGAAATTTGGTTTGGCAGATCG
ATGCCTGAGTCTTGAGTCGAAGAGACTATCAGTCAGGGTTGGTTCCGTGT
AGGTCTGGCTCAGCGCGATAGAAGCGAGGGCGTAAACGCGTACCTCGGGA
CACCCGACAGCGAAAACAACGGCACCATGTAAGCAGGGAGGATAAAGAAA
TGGAGATGAAGAGAGCCGAGGGAATACTTCTCACGTCGGCGTAAGCAGCA
CCAACATAGGATTCTGACGGGCCGTGAAACAGGGTATTTTTTCCGGAGAT
GTGGCGTGCGTTCGGCCCTGGGCCTCTTTGAGTCGTCGTGTTCGGGTCGG
TTCGCAACAGAGTGCACAGCACAGAGGCGATTTTTTCTCGGAACTTGCGA
GAGACGAGGGACATTTTGCGAGCGATTCGTGAAAATCTGCTGGAGGCCTT
TCATGCACGTGTATCATAACGATTGTGTTAGACTGTCGAATTATGGATGT
GGGTCTCGATCCCGTCTTCTTTATCACGACGTGCGAGAGCGGCGCCGCAA
GCGGCCGTCGTCGTTTCTGCGTTCCGAATTATTGTTTTACAGGTTGCCGT
TGTTATTGTTGCTGCTCCGAACAACGTGAACCGAAAGGTGTGCGCGCAAC
GGACAACAACCGCACGTAGTATACTTCACGCACCTCTCTCTGTTGTTTGT
TTCATGATTTATACGGAGTACAAGGAGAAGCCTCTTCCTTTCTACTGTAT
GGTTGTTTTCGGTAAGTTGATGACCAGGTAAATCGCGAGTGGGACAGAGG
ACATGGGGTGTGATTGTGCGGAGTTTGCGTTGGTTCAGTGGAGCGTGCCC
ACTGCTGTGTTTGTCCTTTGGTACACGCGGGCTGTGTGAGTACG
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1496:19980..25223-

>mRNA_H-canaliculatus_F_contig1496.3733.1 ID=mRNA_H-canaliculatus_F_contig1496.3733.1|Name=mRNA_H-canaliculatus_F_contig1496.3733.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1494bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1496:19980..25223- (Hapterophycus canaliculatus Oshoro5f female)
ATGTTCCCCCTGTGCTTCTTGGCGGCTCTGGTGTCCCCGATCTTCGACTG
GCGACGGATGCGACCGCCGACGCTTGTGGCCATTCTGTGGGGGCGGCTTG
CGCTGTGGAACATGGGGGTCAGGCCGAAGGTGGAAGGGGCGGAGCTACTG
CCGCCGAGAGAGGAGGCGGTGGTGTTCGTAGCGAACCACGCTTCGTATCT
GGATATCCCGGTCACCAATTTCTTGCCTCGGATGTGCAAGATGTTCCCCC
TGTGCTTCTTGGCGGCTCTGGTGTCCCCGATCTTCGACTGGCGACGGATG
CGACCGCCGACGCTTGTGGCCATTCTGTGGGGGCGGCTTGCGCTGTGGAA
CATGGGGGTCAGGCCGAAGGTGGAAGGGGCGGAGCTACTGCCGCCGAGAG
AGGAGGCGGTGGTGTTCGTAGCGAACCACGCTTCGTATCTGGATATCCCG
GTCACCAATTTCTTGCCTCGGATGTGCAAGTACCTCATGAAGGCGGAGCT
TCTTTGGCTGCCTATCGTGGGGTGGAAAGCGGTGTTGGCCAAGGACATCT
TCGTGCATAGGCAGACCTCGGCTACATTCCGCCAACTGCTCAGGGTAACC
ACCCGGGCGCTCAAGACGGGGAACTCCATCATGACCTTCCCTGTACCTCA
TGAAGGCGGAGCTTCTTTGGCTGCCTATCGTGGGGTGGAAAGCGGTGTTG
GCCAAGGACATCTTCGTGCATAGGCAGACCTCGGCTACATTCCGCCAACT
GCTCAGGGTAACCACCCGGGCGCTCAAGACGGGGAACTCCATCATGACCT
TCCCTGAGGGAACTCGAAGCCGAGATGGGAAGTTGGGGCAGTTCAAACGC
GGGCCTTTTACGATGGCGCAGCAGGCAGGAGCAAGGATAGTCCCGGTGAC
CATCACGGGAGTGACCGAAGCGATGCCGCCATTTGCCATGGCGCCTTTGC
GCAAGAGGGAACTCGAAGCCGAGATGGGAAGTTGGGGCAGTTCAAACGCG
GGCCTTTTACGATGGCGCAGCAGGCAGGAGCAAGGATAGTCCCGGTGACC
ATCACGGGAGTGACCGAAGCGATGCCGCCATTTGCCATGGCGCCTTTGCG
CAAGCCTCAAAACGTCCGGCTCGTCATCCACCCACCCATCTCCACCAAGG
ACAGACCAATAAAGGAGGTTATGGAGGAGGCTCGAAAAGCCGTGGGCGAC
GGGTTGGAGGAATGGCAAAGACCGAAGCCGCGTGTTGCGGCCACCGAAGC
GTCGTCGGCACCGCTCCCCCCGTCGTCGGCCGCACCGCCACCTCAATGAC
CTCAAAACGTCCGGCTCGTCATCCACCCACCCATCTCCACCAAGGACAGA
CCAATAAAGGAGGTTATGGAGGAGGCTCGAAAAGCCGTGGGCGACGGGTT
GGAGGAATGGCAAAGACCGAAGCCGCGTGTTGCGGCCACCGAAGCGTCGT
CGGCACCGCTCCCCCCGTCGTCGGCCGCACCGCCACCTCAATGA
back to top