mRNA_H-canaliculatus_F_contig14952.3730.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14952.3730.1
Unique NamemRNA_H-canaliculatus_F_contig14952.3730.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig14952.3730.1 vs. uniprot
Match: D8LCK5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCK5_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 4.670e-25
Identity = 55/56 (98.21%), Postives = 56/56 (100.00%), Query Frame = 1 
Query:    1 MARTTTRSGRREMNPTDAYRKLQRKKEVQKNKKERKKVREFSAMVRNPDLMVEEVR 168
            MARTTTRSGRREMNPTDAYRKLQRKKEVQKNKKERKKVREFSAMVRNPDLMVEEV+
Sbjct:    1 MARTTTRSGRREMNPTDAYRKLQRKKEVQKNKKERKKVREFSAMVRNPDLMVEEVQ 56
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BLAST of mRNA_H-canaliculatus_F_contig14952.3730.1 vs. uniprot
Match: A0A6H5JUT0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUT0_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 1.850e-23
Identity = 55/56 (98.21%), Postives = 56/56 (100.00%), Query Frame = 1 
Query:    1 MARTTTRSGRREMNPTDAYRKLQRKKEVQKNKKERKKVREFSAMVRNPDLMVEEVR 168
            MARTTTRSGRREMNPTDAYRKLQRKKEVQKNKKERKKVREFSAMVRNPDLMVEEV+
Sbjct:    1 MARTTTRSGRREMNPTDAYRKLQRKKEVQKNKKERKKVREFSAMVRNPDLMVEEVQ 56
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BLAST of mRNA_H-canaliculatus_F_contig14952.3730.1 vs. uniprot
Match: A0A4D9CTP8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CTP8_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 6.190e-10
Identity = 31/50 (62.00%), Postives = 44/50 (88.00%), Query Frame = 1 
Query:   16 TRSGRREMNPTDAYRKLQRKKEVQKNKKERKKVREFSAMVRNPDLMVEEV 165
            T+SG+REMNP DAYRK QRKKE++KNKK+RK+VRE  + V++P+++ EE+
Sbjct:    5 TKSGKREMNPADAYRKEQRKKEIKKNKKDRKRVRELGSYVKDPEVLKEEI 54
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BLAST of mRNA_H-canaliculatus_F_contig14952.3730.1 vs. uniprot
Match: A0A8K0IW74_COCNU (Uncharacterized protein n=1 Tax=Cocos nucifera TaxID=13894 RepID=A0A8K0IW74_COCNU)

HSP 1 Score: 53.1 bits (126), Expect = 1.100e-7
Identity = 30/54 (55.56%), Postives = 40/54 (74.07%), Query Frame = 1 
Query:    4 ARTTTRSGRREMNPTDAYRKLQRKKEVQKNKKERKKVREFSAMVRNPDLMVEEV 165
            A+  T  G R MNPTDAYRK  RKKE+++NKKERKKVRE   + ++PD + E++
Sbjct:   33 AKMKTTKGGRAMNPTDAYRKELRKKELKRNKKERKKVREVGILKKDPDAIREQI 86
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BLAST of mRNA_H-canaliculatus_F_contig14952.3730.1 vs. uniprot
Match: A0A3L6FQG0_MAIZE (Uncharacterized protein n=1 Tax=Zea mays TaxID=4577 RepID=A0A3L6FQG0_MAIZE)

HSP 1 Score: 52.0 bits (123), Expect = 2.920e-7
Identity = 29/51 (56.86%), Postives = 41/51 (80.39%), Query Frame = 1 
Query:   13 TTRSGRREMNPTDAYRKLQRKKEVQKNKKERKKVREFSAMVRNPDLMVEEV 165
            TT+ G+  MNPTDA+RK QRKKE+++NKKERKKVRE   + ++PD + E++
Sbjct:    3 TTKGGK-AMNPTDAFRKEQRKKELKRNKKERKKVREVGILKKDPDAIREQI 52
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BLAST of mRNA_H-canaliculatus_F_contig14952.3730.1 vs. uniprot
Match: B8B855_ORYSI (Uncharacterized protein n=1 Tax=Oryza sativa subsp. indica TaxID=39946 RepID=B8B855_ORYSI)

HSP 1 Score: 51.6 bits (122), Expect = 2.250e-6
Identity = 28/51 (54.90%), Postives = 42/51 (82.35%), Query Frame = 1 
Query:   13 TTRSGRREMNPTDAYRKLQRKKEVQKNKKERKKVREFSAMVRNPDLMVEEV 165
            TT+ G+  MNPTDA+RK QRKKE+++NKKERKKVRE   + ++P+ ++E++
Sbjct:    3 TTKGGK-VMNPTDAFRKEQRKKELKRNKKERKKVREVGILKKDPEAILEQI 52
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BLAST of mRNA_H-canaliculatus_F_contig14952.3730.1 vs. uniprot
Match: A0A438I339_VITVI (Uncharacterized protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438I339_VITVI)

HSP 1 Score: 48.9 bits (115), Expect = 2.700e-6
Identity = 25/43 (58.14%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:   37 MNPTDAYRKLQRKKEVQKNKKERKKVREFSAMVRNPDLMVEEV 165
            MNPTDAYRK  RKKE+++NKKERKKVRE   + ++P+ + E++
Sbjct:    9 MNPTDAYRKELRKKELKRNKKERKKVREVGILKKDPETLREQI 51
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BLAST of mRNA_H-canaliculatus_F_contig14952.3730.1 vs. uniprot
Match: A0A7S1JCT7_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1JCT7_9EUGL)

HSP 1 Score: 50.8 bits (120), Expect = 2.870e-6
Identity = 27/51 (52.94%), Postives = 40/51 (78.43%), Query Frame = 1 
Query:   16 TRSGRREMNPTDAYRKLQRKKEVQKNKKERKKVREFSAMVRNPDLMVEEVR 168
            T+ G+  +NPTDAYRK QRKKE++KN KERK+ RE +A+  +P+ + EE++
Sbjct:    8 TKGGKALLNPTDAYRKEQRKKELKKNAKERKRSREINALKADPEKLQEEIK 58
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BLAST of mRNA_H-canaliculatus_F_contig14952.3730.1 vs. uniprot
Match: B4FBL9_MAIZE (Proline-rich family protein n=12 Tax=Andropogoneae TaxID=147429 RepID=B4FBL9_MAIZE)

HSP 1 Score: 52.0 bits (123), Expect = 3.010e-6
Identity = 29/51 (56.86%), Postives = 41/51 (80.39%), Query Frame = 1 
Query:   13 TTRSGRREMNPTDAYRKLQRKKEVQKNKKERKKVREFSAMVRNPDLMVEEV 165
            TT+ G+  MNPTDA+RK QRKKE+++NKKERKKVRE   + ++PD + E++
Sbjct:    3 TTKGGK-AMNPTDAFRKEQRKKELKRNKKERKKVREVGILKKDPDAIREQI 52
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BLAST of mRNA_H-canaliculatus_F_contig14952.3730.1 vs. uniprot
Match: A0A5J9W0B0_9POAL (Uncharacterized protein n=1 Tax=Eragrostis curvula TaxID=38414 RepID=A0A5J9W0B0_9POAL)

HSP 1 Score: 52.0 bits (123), Expect = 3.010e-6
Identity = 29/51 (56.86%), Postives = 41/51 (80.39%), Query Frame = 1 
Query:   13 TTRSGRREMNPTDAYRKLQRKKEVQKNKKERKKVREFSAMVRNPDLMVEEV 165
            TT+ G+  MNPTDA+RK QRKKE+++NKKERKKVRE   + ++PD + E++
Sbjct:    3 TTKGGK-VMNPTDAFRKQQRKKELKRNKKERKKVREVGILKKDPDAIREQI 52
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14952.3730.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCK5_ECTSI4.670e-2598.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JUT0_9PHAE1.850e-2398.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A4D9CTP8_9STRA6.190e-1062.00Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A8K0IW74_COCNU1.100e-755.56Uncharacterized protein n=1 Tax=Cocos nucifera Tax... [more]
A0A3L6FQG0_MAIZE2.920e-756.86Uncharacterized protein n=1 Tax=Zea mays TaxID=457... [more]
B8B855_ORYSI2.250e-654.90Uncharacterized protein n=1 Tax=Oryza sativa subsp... [more]
A0A438I339_VITVI2.700e-658.14Uncharacterized protein n=1 Tax=Vitis vinifera Tax... [more]
A0A7S1JCT7_9EUGL2.870e-652.94Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
B4FBL9_MAIZE3.010e-656.86Proline-rich family protein n=12 Tax=Andropogoneae... [more]
A0A5J9W0B0_9POAL3.010e-656.86Uncharacterized protein n=1 Tax=Eragrostis curvula... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14952contigH-canaliculatus_F_contig14952:2180..2353 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score103.2
Seed ortholog evalue4.1e-20
Seed eggNOG ortholog2880.D8LCK5
EggNOG free text desc.mRNA cis splicing, via spliceosome
EggNOG OGsKOG4672@1,KOG4672@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size174
Cds size174
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929237.421707-CDS-H-canaliculatus_F_contig14952:2179..23531622929237.421707-CDS-H-canaliculatus_F_contig14952:2179..2353Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14952 2180..2353 +
1696845730.0728364-CDS-H-canaliculatus_F_contig14952:2179..23531696845730.0728364-CDS-H-canaliculatus_F_contig14952:2179..2353Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14952 2180..2353 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14952.3730.1prot_H-canaliculatus_F_contig14952.3730.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14952 2180..2353 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14952.3730.1

>prot_H-canaliculatus_F_contig14952.3730.1 ID=prot_H-canaliculatus_F_contig14952.3730.1|Name=mRNA_H-canaliculatus_F_contig14952.3730.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=58bp
MARTTTRSGRREMNPTDAYRKLQRKKEVQKNKKERKKVREFSAMVRNPDL
MVEEVRG*
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mRNA from alignment at H-canaliculatus_F_contig14952:2180..2353+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14952.3730.1 ID=mRNA_H-canaliculatus_F_contig14952.3730.1|Name=mRNA_H-canaliculatus_F_contig14952.3730.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=174bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14952:2180..2353+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGCGCGCACGACGACTCGCAGCGGGCGGCGGGAGATGAACCCGACCGA
CGCGTACCGGAAGCTGCAGCGCAAGAAGGAGGTCCAGAAGAACAAAAAGG
AGAGGAAGAAGGTCCGGGAGTTCTCGGCCATGGTTCGCAACCCGGACCTC
ATGGTGGAGGAGGTGAGGGGATAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14952:2180..2353+

>mRNA_H-canaliculatus_F_contig14952.3730.1 ID=mRNA_H-canaliculatus_F_contig14952.3730.1|Name=mRNA_H-canaliculatus_F_contig14952.3730.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=348bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14952:2180..2353+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGCGCGCACGACGACTCGCAGCGGGCGGCGGGAGATGAACCCGACCGA
CGCGTACCGGAAGCTGCAGCGCAAGAAGGAGGTCCAGAAGAACAAAAAGG
AGAGGAAGAAGGTCCGGGAGTTCTCGGCCATGGTTCGCAACCCGGACCTC
ATGGTGGAGGAGGTGAGGGGATAGATGGCGCGCACGACGACTCGCAGCGG
GCGGCGGGAGATGAACCCGACCGACGCGTACCGGAAGCTGCAGCGCAAGA
AGGAGGTCCAGAAGAACAAAAAGGAGAGGAAGAAGGTCCGGGAGTTCTCG
GCCATGGTTCGCAACCCGGACCTCATGGTGGAGGAGGTGAGGGGATAG
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