mRNA_H-canaliculatus_F_contig14909.3706.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14909.3706.1
Unique NamemRNA_H-canaliculatus_F_contig14909.3706.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14909.3706.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14909contigH-canaliculatus_F_contig14909:36..492 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size459
Cds size327
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929233.6722555-CDS-H-canaliculatus_F_contig14909:35..3621622929233.6722555-CDS-H-canaliculatus_F_contig14909:35..362Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14909 36..362 +
1696845728.5881176-CDS-H-canaliculatus_F_contig14909:35..3621696845728.5881176-CDS-H-canaliculatus_F_contig14909:35..362Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14909 36..362 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929233.6911337-UTR-H-canaliculatus_F_contig14909:362..4921622929233.6911337-UTR-H-canaliculatus_F_contig14909:362..492Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14909 363..492 +
1696845728.5978308-UTR-H-canaliculatus_F_contig14909:362..4921696845728.5978308-UTR-H-canaliculatus_F_contig14909:362..492Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14909 363..492 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14909.3706.1prot_H-canaliculatus_F_contig14909.3706.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14909 36..362 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14909.3706.1

>prot_H-canaliculatus_F_contig14909.3706.1 ID=prot_H-canaliculatus_F_contig14909.3706.1|Name=mRNA_H-canaliculatus_F_contig14909.3706.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=109bp
EGGGEREKESDKSSALVQKANTLAEHADWGCLRSTLATSSCNRRRNRGHH
GARLLLGVAHALSYGCGKQVPAKRRHCPNRLTIEIWTPSKETMARRKTTS
TLSPLSQK*
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mRNA from alignment at H-canaliculatus_F_contig14909:36..492+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14909.3706.1 ID=mRNA_H-canaliculatus_F_contig14909.3706.1|Name=mRNA_H-canaliculatus_F_contig14909.3706.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=457bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14909:36..492+ (Hapterophycus canaliculatus Oshoro5f female)
GAGGGGGGGGGGGAGAGAGAGAAAGAGAGTGATAAGTCCTCGGCCCTTGT
CCAAAAAGCGAACACCTTGGCTGAGCATGCCGATTGGGGGTGCTTGCGCT
CAACCCTGGCGACAAGCTCGTGCAACAGACGTCGGAACAGGGGCCATCAC
GGCGCAAGGTTGCTTCTTGGCGTCGCGCACGCGTTGTCATACGGGTGCGG
AAAACAGGTGCCCGCGAAACGTCGCCACTGCCCCAACCGTTTGACAATCG
AAATATGGACCCCGTCGAAGGAAACCATGGCTCGACGTAAAACCACCTCC
ACCCTTTCCCCCTTGTCCCAAAAGTAAAAGGCGGCACCGGACGATTGCTC
CGCGGCACGCTTGCGTGTCATCGTCGACCGTGAGATTCGACAAGACCCAG
TCTCGAATAAACTCACTGGGTTGCCGGCAAGCTCCAGCTCCTCCAGCACG
ATCTCAC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14909:36..492+

>mRNA_H-canaliculatus_F_contig14909.3706.1 ID=mRNA_H-canaliculatus_F_contig14909.3706.1|Name=mRNA_H-canaliculatus_F_contig14909.3706.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=654bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14909:36..492+ (Hapterophycus canaliculatus Oshoro5f female)
GAGGGGGGGGGGGAGAGAGAGAAAGAGAGTGATAAGTCCTCGGCCCTTGT
CCAAAAAGCGAACACCTTGGCTGAGCATGCCGATTGGGGGTGCTTGCGCT
CAACCCTGGCGACAAGCTCGTGCAACAGACGTCGGAACAGGGGCCATCAC
GGCGCAAGGTTGCTTCTTGGCGTCGCGCACGCGTTGTCATACGGGTGCGG
AAAACAGGTGCCCGCGAAACGTCGCCACTGCCCCAACCGTTTGACAATCG
AAATATGGACCCCGTCGAAGGAAACCATGGCTCGACGTAAAACCACCTCC
ACCCTTTCCCCCTTGTCCCAAAAGTAAGAGGGGGGGGGGGAGAGAGAGAA
AGAGAGTGATAAGTCCTCGGCCCTTGTCCAAAAAGCGAACACCTTGGCTG
AGCATGCCGATTGGGGGTGCTTGCGCTCAACCCTGGCGACAAGCTCGTGC
AACAGACGTCGGAACAGGGGCCATCACGGCGCAAGGTTGCTTCTTGGCGT
CGCGCACGCGTTGTCATACGGGTGCGGAAAACAGGTGCCCGCGAAACGTC
GCCACTGCCCCAACCGTTTGACAATCGAAATATGGACCCCGTCGAAGGAA
ACCATGGCTCGACGTAAAACCACCTCCACCCTTTCCCCCTTGTCCCAAAA
GTAA
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