mRNA_H-canaliculatus_F_contig14898.3693.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14898.3693.1
Unique NamemRNA_H-canaliculatus_F_contig14898.3693.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig14898.3693.1 vs. uniprot
Match: D8LRW3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRW3_ECTSI)

HSP 1 Score: 216 bits (551), Expect = 9.470e-63
Identity = 108/128 (84.38%), Postives = 117/128 (91.41%), Query Frame = 1 
Query:    1 VTVAIKQMRTQRRIALTGSPLQNNLIEYFTMVDFARKGMLGTLERFKNYFEAPILNGMLSDSSKADAKRSHGRSHVLHQTLSGFVQRKDVTVMAKALPKDVVKEEIVLTVTLSDSQKALTRKLFREAR 384
            VT AIK++RT+RR+ALTGSPLQNNL+EY+TMVDF RKGMLGTLERFKNYFEAPI+NGML DSS  D KRSHGRSHVLHQTL GFVQRKDVTVMAKALPKDVVKEEIVL V LSD Q+ LTRK+FREAR
Sbjct: 1983 VTQAIKKIRTRRRVALTGSPLQNNLVEYYTMVDFVRKGMLGTLERFKNYFEAPIVNGMLVDSSPYDVKRSHGRSHVLHQTLMGFVQRKDVTVMAKALPKDVVKEEIVLNVNLSDEQQRLTRKIFREAR 2110
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BLAST of mRNA_H-canaliculatus_F_contig14898.3693.1 vs. uniprot
Match: A0A6H5KF11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF11_9PHAE)

HSP 1 Score: 214 bits (544), Expect = 8.320e-62
Identity = 106/128 (82.81%), Postives = 117/128 (91.41%), Query Frame = 1 
Query:    1 VTVAIKQMRTQRRIALTGSPLQNNLIEYFTMVDFARKGMLGTLERFKNYFEAPILNGMLSDSSKADAKRSHGRSHVLHQTLSGFVQRKDVTVMAKALPKDVVKEEIVLTVTLSDSQKALTRKLFREAR 384
            VT AIK++RT+RR+ALTGSPLQNNL+EY+TMVDF R+GMLGTLERFKNYFEAPI+NGML DSS  D KRSHGRSHVLHQTL GFVQRKD+TVMAKALPKDVVKEEIVL V LSD Q+ LTRK+FREAR
Sbjct: 1863 VTQAIKKIRTRRRVALTGSPLQNNLVEYYTMVDFVRQGMLGTLERFKNYFEAPIVNGMLVDSSPYDVKRSHGRSHVLHQTLMGFVQRKDLTVMAKALPKDVVKEEIVLNVNLSDEQQKLTRKIFREAR 1990
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BLAST of mRNA_H-canaliculatus_F_contig14898.3693.1 vs. uniprot
Match: A0A7S0QYE4_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0QYE4_9CHLO)

HSP 1 Score: 127 bits (319), Expect = 1.870e-34
Identity = 66/128 (51.56%), Postives = 87/128 (67.97%), Query Frame = 1 
Query:    1 VTVAIKQMRTQRRIALTGSPLQNNLIEYFTMVDFARKGMLGTLERFKNYFEAPILNGMLSDSSKADAKRSHGRSHVLHQTLSGFVQRKDVTVMAKALPKDVVKEEIVLTVTLSDSQKALTRKLFREAR 384
            +T A++  RT RR+ALTGSPLQNNL+EY+TMVDF R+G LG+   F+N FEAPI NG   DS++ D      R+HVLH +LSGFVQR+ V V+ + LP    K E V+TV LS  Q+ L  +  ++ R
Sbjct:   36 ITSALQGARTARRVALTGSPLQNNLMEYYTMVDFVRQGFLGSTADFRNRFEAPIKNGQHVDSNETDVSMMKHRAHVLHSSLSGFVQRQGVAVLCRQLPP---KYETVITVRLSKLQRTLYEQYLKQFR 160
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BLAST of mRNA_H-canaliculatus_F_contig14898.3693.1 vs. uniprot
Match: UPI0009E37A8B (protein CHROMATIN REMODELING 20 isoform X2 n=1 Tax=Phalaenopsis equestris TaxID=78828 RepID=UPI0009E37A8B)

HSP 1 Score: 127 bits (318), Expect = 2.230e-31
Identity = 65/124 (52.42%), Postives = 87/124 (70.16%), Query Frame = 1 
Query:    1 VTVAIKQMRTQRRIALTGSPLQNNLIEYFTMVDFARKGMLGTLERFKNYFEAPILNGMLSDSSKADAKRSHGRSHVLHQTLSGFVQRKDVTVMAKALPKDVVKEEIVLTVTLSDSQKALTRKLF 372
            +T+A+KQ+RTQRRIALTGSPLQNNL+EY+ MVDF R+G LG+   F+N F+ PI NG  ++S+  D K  + RSH+L++ L GFVQR D+ V+ K LP   V    V+TV LS  Q+ L R+  
Sbjct:  943 ITLALKQVRTQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFQNRFQNPIENGQHTNSTALDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTV---FVITVKLSPLQRKLYRRFL 1063
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BLAST of mRNA_H-canaliculatus_F_contig14898.3693.1 vs. uniprot
Match: UPI0009E309BC (protein CHROMATIN REMODELING 20 isoform X1 n=1 Tax=Phalaenopsis equestris TaxID=78828 RepID=UPI0009E309BC)

HSP 1 Score: 127 bits (318), Expect = 2.260e-31
Identity = 65/124 (52.42%), Postives = 87/124 (70.16%), Query Frame = 1 
Query:    1 VTVAIKQMRTQRRIALTGSPLQNNLIEYFTMVDFARKGMLGTLERFKNYFEAPILNGMLSDSSKADAKRSHGRSHVLHQTLSGFVQRKDVTVMAKALPKDVVKEEIVLTVTLSDSQKALTRKLF 372
            +T+A+KQ+RTQRRIALTGSPLQNNL+EY+ MVDF R+G LG+   F+N F+ PI NG  ++S+  D K  + RSH+L++ L GFVQR D+ V+ K LP   V    V+TV LS  Q+ L R+  
Sbjct:  943 ITLALKQVRTQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFQNRFQNPIENGQHTNSTALDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTV---FVITVKLSPLQRKLYRRFL 1063
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BLAST of mRNA_H-canaliculatus_F_contig14898.3693.1 vs. uniprot
Match: A0A6P5EKF0_ANACO (ATP-dependent helicase ATRX n=5 Tax=Ananas comosus TaxID=4615 RepID=A0A6P5EKF0_ANACO)

HSP 1 Score: 127 bits (318), Expect = 2.260e-31
Identity = 67/123 (54.47%), Postives = 86/123 (69.92%), Query Frame = 1 
Query:    4 TVAIKQMRTQRRIALTGSPLQNNLIEYFTMVDFARKGMLGTLERFKNYFEAPILNGMLSDSSKADAKRSHGRSHVLHQTLSGFVQRKDVTVMAKALPKDVVKEEIVLTVTLSDSQKALTRKLF 372
            T A+KQ++TQRRIALTGSPLQNNL+EY+ MVDF R+G LGT   F+N F+ PI NG  ++S+K D K  + RSH+L++ L GFVQR D+ V+ K LP   V    V+TV LS  Q+ L RK  
Sbjct:  933 TQALKQVKTQRRIALTGSPLQNNLMEYYCMVDFVREGYLGTSYEFRNRFQNPIENGQHANSTKDDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTV---YVITVKLSPLQRKLYRKFL 1052
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BLAST of mRNA_H-canaliculatus_F_contig14898.3693.1 vs. uniprot
Match: UPI000C1D663E (protein CHROMATIN REMODELING 20-like n=1 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1D663E)

HSP 1 Score: 117 bits (294), Expect = 5.150e-31
Identity = 61/123 (49.59%), Postives = 84/123 (68.29%), Query Frame = 1 
Query:    4 TVAIKQMRTQRRIALTGSPLQNNLIEYFTMVDFARKGMLGTLERFKNYFEAPILNGMLSDSSKADAKRSHGRSHVLHQTLSGFVQRKDVTVMAKALPKDVVKEEIVLTVTLSDSQKALTRKLF 372
            T A+KQ++ QRRIALTGSPLQNNL+EY+ MVDF R+G LG+   F+N ++ PI NG  ++S+  D K  + RSHVL++ L GFVQR D++V+ K LP   V    V+ V LS  Q+ L ++  
Sbjct:   10 THALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRYQNPIENGQHTNSTAEDVKIMNQRSHVLYEQLKGFVQRMDMSVVKKDLPPKTV---FVIAVKLSHLQRQLYKRFL 129
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BLAST of mRNA_H-canaliculatus_F_contig14898.3693.1 vs. uniprot
Match: A0A835UWH7_VANPL (Uncharacterized protein n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835UWH7_VANPL)

HSP 1 Score: 125 bits (315), Expect = 5.650e-31
Identity = 64/124 (51.61%), Postives = 87/124 (70.16%), Query Frame = 1 
Query:    1 VTVAIKQMRTQRRIALTGSPLQNNLIEYFTMVDFARKGMLGTLERFKNYFEAPILNGMLSDSSKADAKRSHGRSHVLHQTLSGFVQRKDVTVMAKALPKDVVKEEIVLTVTLSDSQKALTRKLF 372
            +T+A+KQ++TQRRIALTGSPLQNNL+EY+ MVDF R+G LG+   F+N F+ PI NG  ++S+  D K  + RSH+L++ L GFVQR D+ V+ K LP   V    V+TV LS  Q+ L R+  
Sbjct:  961 ITLALKQVQTQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTAEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPHKTV---FVITVKLSPLQRKLYRRFL 1081
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BLAST of mRNA_H-canaliculatus_F_contig14898.3693.1 vs. uniprot
Match: A0A835UUV4_VANPL (ATP-dependent helicase ATRX n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835UUV4_VANPL)

HSP 1 Score: 125 bits (315), Expect = 5.740e-31
Identity = 64/124 (51.61%), Postives = 87/124 (70.16%), Query Frame = 1 
Query:    1 VTVAIKQMRTQRRIALTGSPLQNNLIEYFTMVDFARKGMLGTLERFKNYFEAPILNGMLSDSSKADAKRSHGRSHVLHQTLSGFVQRKDVTVMAKALPKDVVKEEIVLTVTLSDSQKALTRKLF 372
            +T+A+KQ++TQRRIALTGSPLQNNL+EY+ MVDF R+G LG+   F+N F+ PI NG  ++S+  D K  + RSH+L++ L GFVQR D+ V+ K LP   V    V+TV LS  Q+ L R+  
Sbjct:  961 ITLALKQVQTQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTAEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPHKTV---FVITVKLSPLQRKLYRRFL 1081
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BLAST of mRNA_H-canaliculatus_F_contig14898.3693.1 vs. uniprot
Match: A0A1D1Z2M2_9ARAE (ATP-dependent helicase ATRX n=2 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1Z2M2_9ARAE)

HSP 1 Score: 125 bits (315), Expect = 5.740e-31
Identity = 64/124 (51.61%), Postives = 86/124 (69.35%), Query Frame = 1 
Query:    1 VTVAIKQMRTQRRIALTGSPLQNNLIEYFTMVDFARKGMLGTLERFKNYFEAPILNGMLSDSSKADAKRSHGRSHVLHQTLSGFVQRKDVTVMAKALPKDVVKEEIVLTVTLSDSQKALTRKLF 372
            +T A+KQ+RTQRRIALTGSPLQNNL+EY+ MVDF R+G LG+   F+N F+ PI NG  ++S+  D K  + RSH+L++ L GFVQR D+ V+ K LP   V    V+TV LS  Q+ L ++  
Sbjct:  957 ITQALKQVRTQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHANSTSVDVKIMNQRSHILYEQLKGFVQRMDLNVVKKDLPPKTV---FVITVKLSPLQRKLYKRFL 1077
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14898.3693.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRW3_ECTSI9.470e-6384.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KF11_9PHAE8.320e-6282.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S0QYE4_9CHLO1.870e-3451.56Hypothetical protein (Fragment) n=1 Tax=Pyramimona... [more]
UPI0009E37A8B2.230e-3152.42protein CHROMATIN REMODELING 20 isoform X2 n=1 Tax... [more]
UPI0009E309BC2.260e-3152.42protein CHROMATIN REMODELING 20 isoform X1 n=1 Tax... [more]
A0A6P5EKF0_ANACO2.260e-3154.47ATP-dependent helicase ATRX n=5 Tax=Ananas comosus... [more]
UPI000C1D663E5.150e-3149.59protein CHROMATIN REMODELING 20-like n=1 Tax=Olea ... [more]
A0A835UWH7_VANPL5.650e-3151.61Uncharacterized protein n=1 Tax=Vanilla planifolia... [more]
A0A835UUV4_VANPL5.740e-3151.61ATP-dependent helicase ATRX n=1 Tax=Vanilla planif... [more]
A0A1D1Z2M2_9ARAE5.740e-3151.61ATP-dependent helicase ATRX n=2 Tax=Anthurium amni... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14898contigH-canaliculatus_F_contig14898:756..1590 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score208.8
Seed ortholog evalue1.5e-51
Seed eggNOG ortholog2880.D8LRW3
KEGG koko:K06767,ko:K10779,ko:K10875,ko:K10876
KEGG Pathwayko03440,map03440
EggNOG free text desc.ATP binding
EggNOG OGsCOG0553@1,KOG1015@2759,KOG1016@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03000,ko03036,ko03400,ko04516
Hectar predicted targeting categoryother localisation
Exons2
Model size387
Cds size366
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14898.3693.1prot_H-canaliculatus_F_contig14898.3693.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14898 777..1590 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929231.0469205-UTR-H-canaliculatus_F_contig14898:755..7761622929231.0469205-UTR-H-canaliculatus_F_contig14898:755..776Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14898 756..776 +
1696845727.247123-UTR-H-canaliculatus_F_contig14898:755..7761696845727.247123-UTR-H-canaliculatus_F_contig14898:755..776Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14898 756..776 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929231.0577183-CDS-H-canaliculatus_F_contig14898:776..9591622929231.0577183-CDS-H-canaliculatus_F_contig14898:776..959Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14898 777..959 +
1696845727.2602775-CDS-H-canaliculatus_F_contig14898:776..9591696845727.2602775-CDS-H-canaliculatus_F_contig14898:776..959Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14898 777..959 +
1622929231.0785294-CDS-H-canaliculatus_F_contig14898:1407..15901622929231.0785294-CDS-H-canaliculatus_F_contig14898:1407..1590Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14898 1408..1590 +
1696845727.2698128-CDS-H-canaliculatus_F_contig14898:1407..15901696845727.2698128-CDS-H-canaliculatus_F_contig14898:1407..1590Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14898 1408..1590 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14898.3693.1

>prot_H-canaliculatus_F_contig14898.3693.1 ID=prot_H-canaliculatus_F_contig14898.3693.1|Name=mRNA_H-canaliculatus_F_contig14898.3693.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=122bp
MRTQRRIALTGSPLQNNLIEYFTMVDFARKGMLGTLERFKNYFEAPILNG
MLSDSSKADAKRSHGRSHVLHQTLSGFVQRKDVTVMAKALPKDVVKEEIV
LTVTLSDSQKALTRKLFREAR*
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mRNA from alignment at H-canaliculatus_F_contig14898:756..1590+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14898.3693.1 ID=mRNA_H-canaliculatus_F_contig14898.3693.1|Name=mRNA_H-canaliculatus_F_contig14898.3693.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=835bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14898:756..1590+ (Hapterophycus canaliculatus Oshoro5f female)
GTGACCGTCGCCATCAAGCAGATGAGGACGCAGCGACGGATCGCGCTCAC
GGGGTCCCCCCTCCAGAACAACCTTATCGAGTACTTCACCATGGTCGACT
TTGCGCGAAAGGGCATGCTCGGGACCCTGGAACGATTCAAGAACTACTTC
GAGGCTCCGATCCTCAACGGCATGCTGAGCGACAGCTCCAAGGCTGACGC
CAAGGTGCGTACGACGAGGCGGCGCGGCAGCGATGAGGCGGGATGGCCTG
ATGATCTTAGGGCCGCACACGGTCCCCCCGTGTCGCCAGGTCTGGACGGT
GCATCACTGTCATCATGCCGCATTTTGTTTGTTACATCGGCCAGCGCAGG
TTCATGCTTGAGAGCATGCTTTCAACAAAAGGGTGGGCTCGACGACCCAT
TGCGCACTGCTTGTCTCTGATGCCGGCCTCCGGTGTTGGTGCCATCGCCC
CAGTGTCGATCTTGCCACACCGGGGAGGAGATGTGAGACCTCGACCCGGA
CCTAACTCTCTCCCCTGCAACCTGTCTTGTCTTGCTGCCCGCCCTCCCGA
CCGCTTCCTCGTCTGCCCGCCTGTCCACCTACCCGCGCGCGTGCCCTTTC
CGGTCCATGATGTCGCGAACTTGCTGCAACGCGACGAATCGGATCGTGGC
AGAGGAGCCACGGGAGGTCGCACGTGCTGCACCAGACCCTGAGCGGGTTC
GTCCAGCGCAAGGACGTGACGGTTATGGCCAAAGCCCTCCCCAAGGACGT
CGTGAAGGAGGAGATCGTGTTGACGGTGACGCTGAGCGATTCGCAGAAGG
CGCTCACCAGGAAGCTCTTCCGGGAGGCCAGGTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14898:756..1590+

>mRNA_H-canaliculatus_F_contig14898.3693.1 ID=mRNA_H-canaliculatus_F_contig14898.3693.1|Name=mRNA_H-canaliculatus_F_contig14898.3693.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=732bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14898:756..1590+ (Hapterophycus canaliculatus Oshoro5f female)
ATGAGGACGCAGCGACGGATCGCGCTCACGGGGTCCCCCCTCCAGAACAA
CCTTATCGAGTACTTCACCATGGTCGACTTTGCGCGAAAGGGCATGCTCG
GGACCCTGGAACGATTCAAGAACTACTTCGAGGCTCCGATCCTCAACGGC
ATGCTGAGCGACAGCTCCAAGGCTGACGCCAAGATGAGGACGCAGCGACG
GATCGCGCTCACGGGGTCCCCCCTCCAGAACAACCTTATCGAGTACTTCA
CCATGGTCGACTTTGCGCGAAAGGGCATGCTCGGGACCCTGGAACGATTC
AAGAACTACTTCGAGGCTCCGATCCTCAACGGCATGCTGAGCGACAGCTC
CAAGGCTGACGCCAAGAGGAGCCACGGGAGGTCGCACGTGCTGCACCAGA
CCCTGAGCGGGTTCGTCCAGCGCAAGGACGTGACGGTTATGGCCAAAGCC
CTCCCCAAGGACGTCGTGAAGGAGGAGATCGTGTTGACGGTGACGCTGAG
CGATTCGCAGAAGGCGCTCACCAGGAAGCTCTTCCGGGAGGCCAGGTGAA
GGAGCCACGGGAGGTCGCACGTGCTGCACCAGACCCTGAGCGGGTTCGTC
CAGCGCAAGGACGTGACGGTTATGGCCAAAGCCCTCCCCAAGGACGTCGT
GAAGGAGGAGATCGTGTTGACGGTGACGCTGAGCGATTCGCAGAAGGCGC
TCACCAGGAAGCTCTTCCGGGAGGCCAGGTGA
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