mRNA_H-canaliculatus_F_contig14895.3692.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14895.3692.1
Unique NamemRNA_H-canaliculatus_F_contig14895.3692.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig14895.3692.1 vs. uniprot
Match: A0A6H5K8R4_9PHAE (E3 ubiquitin-protein ligase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8R4_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 7.830e-30
Identity = 52/66 (78.79%), Postives = 57/66 (86.36%), Query Frame = 1 
Query:    1 ADGWASTRTRDGSVVLDPLETSAFHRWGRQRLHLGQCGHAVHLTCWDAYFQSLLGRHNSNQVINER 198
            A GWASTRT+DGSVVLDPLET AF RWGRQRLH+G CGHAVH +CWDAYFQSLLGR N+NQ  + R
Sbjct: 1369 AVGWASTRTQDGSVVLDPLETQAFRRWGRQRLHVGLCGHAVHFSCWDAYFQSLLGRSNANQTFDGR 1434
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BLAST of mRNA_H-canaliculatus_F_contig14895.3692.1 vs. uniprot
Match: A0A7S0XM04_9STRA (E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Chrysocystis fragilis TaxID=1411660 RepID=A0A7S0XM04_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 3.100e-12
Identity = 29/66 (43.94%), Postives = 39/66 (59.09%), Query Frame = 1 
Query:    1 ADGWASTRTRDGSVVLDPLETSAFHRWGRQRLHLGQCGHAVHLTCWDAYFQSLLGRHNSNQVINER 198
            A GWA          L P   +++ RWG+ RLH+  CGHAVH +CWDA+F SLL +  +N+V   R
Sbjct:    9 ASGWAR------EAELRPAIEASWRRWGKTRLHVSTCGHAVHPSCWDAFFGSLLAKAYANEVFEGR 68
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14895.3692.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K8R4_9PHAE7.830e-3078.79E3 ubiquitin-protein ligase n=1 Tax=Ectocarpus sp.... [more]
A0A7S0XM04_9STRA3.100e-1243.94E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Chr... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14895contigH-canaliculatus_F_contig14895:140..352 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size213
Cds size213
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929230.99479-CDS-H-canaliculatus_F_contig14895:139..3521622929230.99479-CDS-H-canaliculatus_F_contig14895:139..352Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14895 140..352 -
1696845727.23593-CDS-H-canaliculatus_F_contig14895:139..3521696845727.23593-CDS-H-canaliculatus_F_contig14895:139..352Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14895 140..352 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14895.3692.1prot_H-canaliculatus_F_contig14895.3692.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14895 140..352 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14895.3692.1

>prot_H-canaliculatus_F_contig14895.3692.1 ID=prot_H-canaliculatus_F_contig14895.3692.1|Name=mRNA_H-canaliculatus_F_contig14895.3692.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=71bp
ADGWASTRTRDGSVVLDPLETSAFHRWGRQRLHLGQCGHAVHLTCWDAYF
QSLLGRHNSNQVINERCGGG*
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mRNA from alignment at H-canaliculatus_F_contig14895:140..352-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14895.3692.1 ID=mRNA_H-canaliculatus_F_contig14895.3692.1|Name=mRNA_H-canaliculatus_F_contig14895.3692.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=213bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14895:140..352- (Hapterophycus canaliculatus Oshoro5f female)
GCCGACGGCTGGGCCAGCACGCGCACGCGGGACGGCAGCGTCGTCCTAGA
CCCCCTCGAGACCAGCGCCTTCCACCGCTGGGGGCGGCAGCGGCTGCACC
TCGGCCAGTGCGGGCACGCCGTGCACCTCACGTGCTGGGACGCGTACTTC
CAGTCACTTCTCGGGCGGCACAACTCGAACCAGGTGATTAACGAACGTTG
CGGGGGAGGGTAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14895:140..352-

>mRNA_H-canaliculatus_F_contig14895.3692.1 ID=mRNA_H-canaliculatus_F_contig14895.3692.1|Name=mRNA_H-canaliculatus_F_contig14895.3692.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=426bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14895:140..352- (Hapterophycus canaliculatus Oshoro5f female)
GCCGACGGCTGGGCCAGCACGCGCACGCGGGACGGCAGCGTCGTCCTAGA
CCCCCTCGAGACCAGCGCCTTCCACCGCTGGGGGCGGCAGCGGCTGCACC
TCGGCCAGTGCGGGCACGCCGTGCACCTCACGTGCTGGGACGCGTACTTC
CAGTCACTTCTCGGGCGGCACAACTCGAACCAGGTGATTAACGAACGTTG
CGGGGGAGGGTAGGCCGACGGCTGGGCCAGCACGCGCACGCGGGACGGCA
GCGTCGTCCTAGACCCCCTCGAGACCAGCGCCTTCCACCGCTGGGGGCGG
CAGCGGCTGCACCTCGGCCAGTGCGGGCACGCCGTGCACCTCACGTGCTG
GGACGCGTACTTCCAGTCACTTCTCGGGCGGCACAACTCGAACCAGGTGA
TTAACGAACGTTGCGGGGGAGGGTAG
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