mRNA_H-canaliculatus_F_contig1483.3657.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig1483.3657.1 vs. uniprot
Match: D8LKS5_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKS5_ECTSI) HSP 1 Score: 245 bits (626), Expect = 1.460e-72 Identity = 120/162 (74.07%), Postives = 135/162 (83.33%), Query Frame = 1
Query: 1 NRWSRPPLSVLSSGWESALGWWNDVKQFGEGKSNKL--MLVGLENAGKSIIVRNLTGGSAPGRADRTVGIEITPEWKPLEEARLQISVWDFAGQADYYVSHQLFLTEGALFLLVVDLRKFSTEIESDADNFTDTGRCVYWWLDMLHMRVPGAAIALVGSHVD 480
N WSRPP +VL SG+E ALGWW DVK+FGEGKSNKL +LVGL AGK+ IVR++TG S P R+DRTVGIEIT +WKP +E LQ+SVWDFAGQADYY SHQLFLT+GALFLLVVDL FS EI S DNFTD R +YWWL+MLHMRVPGAA+ALVGSHVD
Sbjct: 248 NPWSRPPSTVLESGFERALGWWEDVKRFGEGKSNKLKMVLVGLAGAGKTTIVRHMTGRSVPKRSDRTVGIEITTDWKPGDEVPLQVSVWDFAGQADYYSSHQLFLTKGALFLLVVDLHAFSKEIGSGVDNFTDPRRRIYWWLEMLHMRVPGAAVALVGSHVD 409
BLAST of mRNA_H-canaliculatus_F_contig1483.3657.1 vs. uniprot
Match: D8LK68_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK68_ECTSI) HSP 1 Score: 157 bits (396), Expect = 2.370e-41 Identity = 83/162 (51.23%), Postives = 110/162 (67.90%), Query Frame = 1
Query: 1 NRWSRPPLSVLSSGWESALGWWNDVKQFGEGKSNKL--MLVGLENAGKSIIVRNLTGGSAPGRADRTVGIEITPEWKPLEEARLQISVWDFAGQADYYVSHQLFLTEGALFLLVVDLRKFSTEIESDADNFTDTGRCVYWWLDMLHMRVPGAAIALVGSHVD 480
N W RPP + L+ G SA WW+ + +FGEG S+KL +LVGL AGK+ IVR+ TGG + RT+G+E++ EWKP + L +S+WDF+GQ+DY+ SHQ+FLTEGALFLLVVDL F + + D +Y WL +LH RVPGA +ALVG+H D
Sbjct: 393 NPWVRPPRAFLARGLVSAGRWWDGIARFGEGTSSKLKMVLVGLAEAGKTTIVRHFTGGDPADK--RTIGVELS-EWKPNKNLPLAVSLWDFSGQSDYHASHQIFLTEGALFLLVVDL--FELGRDEKSAGIPDPRGAIYRWLVILHERVPGAVVALVGTHGD 549
BLAST of mRNA_H-canaliculatus_F_contig1483.3657.1 vs. uniprot
Match: D8LLG1_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLG1_ECTSI) HSP 1 Score: 115 bits (289), Expect = 5.610e-27 Identity = 67/164 (40.85%), Postives = 94/164 (57.32%), Query Frame = 1
Query: 1 NRWSRPPLSVLSSGWESALGWWNDVKQFGEG--KSNKLMLVGLENAGKSIIVRNLTGGS-APGRADRTVGIEITPE-WKPLEEARLQISVWDFAGQADYYVSHQLFLTEGALFLLVVDLRKFSTEIESDADNFTDTGRCVYWWLDMLHMRVPGAAIALVGSHVD 480
N W PP +V+ GW+ + + + Q G S K++LVG AGK+ + R L G A RT GI++ + W P + L++ +WDFAG DY+ +HQ+FLT+GAL LLVVDL KF ++ S G VY WLD L RVPG+A+ +V +H D
Sbjct: 153 NPWETPPWNVIQGGWDQVVSFHEGLSQSGGQVVPSLKVVLVGAVGAGKTTLARGLLDGKIAQTLPPRTRGIDVHIQPWVPDFDPPLEVLIWDFAGHDDYHSTHQMFLTDGALHLLVVDLHKFDRDVLS-------RGGGVYIWLDSLLCRVPGSAVLVVATHAD 309
BLAST of mRNA_H-canaliculatus_F_contig1483.3657.1 vs. uniprot
Match: A0A6H5JSN1_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSN1_9PHAE) HSP 1 Score: 112 bits (281), Expect = 6.560e-26 Identity = 69/174 (39.66%), Postives = 94/174 (54.02%), Query Frame = 1
Query: 1 NRWSRPPLSVLSSGWESALGWWNDVKQFGEGKSNKL--MLVGLENAGKSIIVRNLTGGSA----PGRADRTVGIEITP--------EWKPLEEARLQISVWDFAGQADYYVSHQLFLTEGALFLLVVDLRKFSTEIESDADNFTDTGRCVYWWLDMLHMRVPGAAIALVGSHVD 480
N W+ PP VL G A + D++ FG SN+L +LVGL NAGK+ + L G + P +RTVG+EI + A L + +WDFAGQ YY +HQ+FLT GALF+LVVD+ +S + S D WLD+L RVPG+ + L+G+H D
Sbjct: 13 NPWTEPPADVLQVGLAYAASFLKDLEDFGRTSSNRLKVVLVGLGNAGKTSVAVRLEGLAPSKPLPSAKERTVGVEIRDIRLGSGPANARSGGNAELDVKLWDFAGQRAYYDTHQMFLTPGALFVLVVDMFAYSEDGHSREDALEQ-------WLDILQARVPGSVVLLMGTHSD 179
BLAST of mRNA_H-canaliculatus_F_contig1483.3657.1 vs. uniprot
Match: A0A6H5JPJ1_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPJ1_9PHAE) HSP 1 Score: 112 bits (281), Expect = 6.710e-26 Identity = 71/174 (40.80%), Postives = 95/174 (54.60%), Query Frame = 1
Query: 1 NRWSRPPLSVLSSGWESALGWWNDVKQFGEGKSNKL--MLVGLENAGKSIIVRNLTGGSA----PGRADRTVGIEITP-EWKP-------LEEARLQISVWDFAGQADYYVSHQLFLTEGALFLLVVDLRKFSTEIESDADNFTDTGRCVYWWLDMLHMRVPGAAIALVGSHVD 480
N W+ PP VL G A + D+ FG SN+L +LVGL NAGK+ + L G ++ P +RTVG+EI + P A L + +WDFAGQ YY +HQ+FLT GALF+LVVD+ +S + S D WLD+L RVPG+ + LVG+H D
Sbjct: 185 NPWTEPPADVLELGMAYAARFLKDLNDFGRTSSNRLKVVLVGLGNAGKTSVAVRLEGLASSKPLPTAEERTVGVEIRDIQLAPGPANGGSRGNAELDVKLWDFAGQRAYYDTHQMFLTPGALFVLVVDIFAYSEDGHSREDALEQ-------WLDILQARVPGSVVLLVGTHSD 351
BLAST of mRNA_H-canaliculatus_F_contig1483.3657.1 vs. uniprot
Match: A0A6H5K9A9_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9A9_9PHAE) HSP 1 Score: 112 bits (280), Expect = 8.960e-26 Identity = 73/174 (41.95%), Postives = 94/174 (54.02%), Query Frame = 1
Query: 1 NRWSRPPLSVLSSGWESALGWWNDVKQFGEGKSNKL--MLVGLENAGKSIIVRNLT---GGSAPGRADRTVGIEI---------TPEWKPLEEARLQISVWDFAGQADYYVSHQLFLTEGALFLLVVDLRKFSTEIESDADNFTDTGRCVYWWLDMLHMRVPGAAIALVGSHVD 480
N W PP V+ G A + D+ +G SN+L +LVGL AGK+ I L GG P +RTVG+EI T E L +S+WDFAGQ YY +HQ+FLT+GALF+LVVD+ ++ E S D V WLD+L RVPGA + LVG+H D
Sbjct: 26 NPWKEPPADVMKRGMAYAAVFLRDLDDYGRAWSNRLKVVLVGLGGAGKTSIATRLEDRLGGCCPNPEERTVGVEIRNIKLGPGATSEGSG-PNVELDVSLWDFAGQRAYYDTHQMFLTQGALFVLVVDMFAYA-EGHSPED-------AVEQWLDILQARVPGAVLLLVGTHTD 190
BLAST of mRNA_H-canaliculatus_F_contig1483.3657.1 vs. uniprot
Match: D7FU35_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU35_ECTSI) HSP 1 Score: 109 bits (273), Expect = 8.020e-25 Identity = 71/173 (41.04%), Postives = 94/173 (54.34%), Query Frame = 1
Query: 1 NRWSRPPLSVLSSGWESALGWWNDVKQFGEGKSNKL--MLVGLENAGKSIIVRNLT---GGSAPGRADRTVGIEITPEWK---PLEEA-----RLQISVWDFAGQADYYVSHQLFLTEGALFLLVVDLRKFSTEIESDADNFTDTGRCVYWWLDMLHMRVPGAAIALVGSHVD 480
N W PP V++ G A + D+ +G SN+L +LVGL AGK+ I L G S P +RTVG+EI P E L +S+WDFAGQ YY +HQ+FLT GALF+LVVD+ + TE +S D WL++L RVPG+ + LVG+H D
Sbjct: 321 NPWKEPPAEVMNKGMAHAAVFLRDLDDYGRAWSNRLKVVLVGLGEAGKTSIATRLEDRLGSSCPKPEERTVGVEIRDIKLGPGPTNEGSGPNVELDVSLWDFAGQRAYYDTHQMFLTPGALFVLVVDMFTY-TEGQSREDALEQ-------WLEILQARVPGSVVLLVGTHTD 485
BLAST of mRNA_H-canaliculatus_F_contig1483.3657.1 vs. uniprot
Match: A0A6H5L2L4_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2L4_9PHAE) HSP 1 Score: 104 bits (259), Expect = 5.950e-23 Identity = 67/173 (38.73%), Postives = 92/173 (53.18%), Query Frame = 1
Query: 1 NRWSRPPLSVLSSGWESALGWWNDVKQFGEGKSNKL--MLVGLENAGKSIIVRNLTG---GSAPGRADRTVGIEITPEWK---PLEEA-----RLQISVWDFAGQADYYVSHQLFLTEGALFLLVVDLRKFSTEIESDADNFTDTGRCVYWWLDMLHMRVPGAAIALVGSHVD 480
N W PP V+ G + D+ +G N+L +LVGL AGK+ I L G S P +RTVG+EI P E L +S+WDFAGQ YY +HQ+FLT GALF+LVVD+ F+ E+ ++ + WL++L RVPG+ + LVG+H D
Sbjct: 66 NPWKEPPAKVMEKGMAHTAVFLKDLDDYGRAWYNRLKVVLVGLGEAGKTSIATRLEGRLGSSCPKPEERTVGVEIRDIKLGPGPTNEGIGPNDELDVSLWDFAGQRAYYDTHQMFLTPGALFVLVVDM--FTYEVGQSKEDALEQ------WLEILQARVPGSIMLLVGTHTD 230
BLAST of mRNA_H-canaliculatus_F_contig1483.3657.1 vs. uniprot
Match: L8GIF8_ACACA (Non-specific serine/threonine protein kinase n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GIF8_ACACA) HSP 1 Score: 86.7 bits (213), Expect = 9.610e-17 Identity = 61/170 (35.88%), Postives = 88/170 (51.76%), Query Frame = 1
Query: 16 PPLSVLSSGWESALGWWNDVKQFGEGKSN----KLMLVGLENAGKSIIVRNLTGGSAPGRADR------TVGIEITPEW-----KPLEEARLQISVWDFAGQADYYVSHQLFLTEGALFLLVVDLRKFSTEIESDADNFTDTGRCVYWWLDMLHMRVPGAAIALVGSHVD 480
PP+++ + G E+ LG+ +KQF G KLMLVG EN GKS ++R L + D T GI+I EW + E + ++ WDFAGQ YY +HQ FL+E +LFLLV D+ K +E +F WL+ + R A + +VG+H+D
Sbjct: 1487 PPINIEAEGEEAVLGF---IKQFINGFERCYRYKLMLVGQENVGKSTLLRCLNSQRTQRKPDAQQPNISTDGIDIG-EWTIKVTRDNETKEISLTTWDFAGQELYYSTHQFFLSERSLFLLVTDVSK---PLEFSRLDF---------WLESIRSRTKSAQVIIVGTHID 1640
BLAST of mRNA_H-canaliculatus_F_contig1483.3657.1 vs. uniprot
Match: A0A6P4Y5Y3_BRABE (malignant fibrous histiocytoma-amplified sequence 1 homolog n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4Y5Y3_BRABE) HSP 1 Score: 86.3 bits (212), Expect = 1.270e-16 Identity = 56/160 (35.00%), Postives = 94/160 (58.75%), Query Frame = 1
Query: 13 RPPLSVLSSGWESALGWWNDVKQFGEGKSN--KLMLVGLENAGKSIIVRNLTGGSAP--GRADRTVGIEITPEWKPLEEARLQISVWDFAGQADYYVSHQLFLTEGALFLLVVDLRKFSTEIESDADNFTDTGRCVYWWLDMLHMRVPGAAIALVGSHVD 480
+PP V G ++ +++++++ E S K++++G AGK+ +V+ L G + DRT +EIT +W P + + V+DF G Y+++HQLFLT+GAL LL V+L+++ E +T + V +WLD L+ RVPGA + +VGS +D
Sbjct: 422 KPPAEVCRQGIDAIRQYFDELERSEEAVSAHLKVVVLGETMAGKTSLVQTLNSGKSTLTEEEDRTHCVEIT-QWAPTDN--ITFEVYDFGGHDMYHLTHQLFLTQGALNLLTVNLQEYRCSEEC----YT---QAVGFWLDTLNARVPGAVVTIVGSKMD 571 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1483.3657.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1483.3657.1 >prot_H-canaliculatus_F_contig1483.3657.1 ID=prot_H-canaliculatus_F_contig1483.3657.1|Name=mRNA_H-canaliculatus_F_contig1483.3657.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=160bp NRWSRPPLSVLSSGWESALGWWNDVKQFGEGKSNKLMLVGLENAGKSIIVback to top mRNA from alignment at H-canaliculatus_F_contig1483:961..1440+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig1483.3657.1 ID=mRNA_H-canaliculatus_F_contig1483.3657.1|Name=mRNA_H-canaliculatus_F_contig1483.3657.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=480bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1483:961..1440+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1483:961..1440+ >mRNA_H-canaliculatus_F_contig1483.3657.1 ID=mRNA_H-canaliculatus_F_contig1483.3657.1|Name=mRNA_H-canaliculatus_F_contig1483.3657.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=960bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1483:961..1440+ (Hapterophycus canaliculatus Oshoro5f female)back to top |