mRNA_H-canaliculatus_F_contig1478.3631.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig1478.3631.1 vs. uniprot
Match: D8LJP2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJP2_ECTSI) HSP 1 Score: 394 bits (1013), Expect = 5.960e-130 Identity = 215/230 (93.48%), Postives = 220/230 (95.65%), Query Frame = 2
Query: 761 GGVLSGGLHAVSGPDHLAALLPRIMGQKWHNSMRIGATWGLGHGFSATVIGLAAFFFKDRLGLGHNERLVAMMGTWTEGLVGVSLIAIGLLGLKESLLDYEETPV--AKSAGSAVVEGGGXXXXXXXXXXXGGGKAIFLNGVLHGFSWDGAPSLAPALALSSWGSVLWFLLAYCSGTMVAMSATTTLIGEGSVRVGKALDQPDIPRKLSIVSSMVAITIGAVWLAKAVFF 1444
GGVL+GGLHAVSGPDHLAALLPRIMGQKWH SMRIGATWGLGHGFSATVIGLAAFFFKDRLGLGHN+RLVAMMG+WTEGLVGVSLIAIGLLGLKESLLDYEETP AKSAGSAVVEG XXXXXXXXXXX G +AIF NGVLHGFSWDGAPSLAPALALSSWGSVLWFLLAYCSGTMVAMSATTTLIGEGSVRVGKALDQPDIPRKLS+VSS VAITIGAVWLAKAVFF
Sbjct: 8 GGVLAGGLHAVSGPDHLAALLPRIMGQKWHKSMRIGATWGLGHGFSATVIGLAAFFFKDRLGLGHNKRLVAMMGSWTEGLVGVSLIAIGLLGLKESLLDYEETPAFEAKSAGSAVVEGXXXXXXXXXXXXXXGERAIFFNGVLHGFSWDGAPSLAPALALSSWGSVLWFLLAYCSGTMVAMSATTTLIGEGSVRVGKALDQPDIPRKLSVVSSFVAITIGAVWLAKAVFF 237
BLAST of mRNA_H-canaliculatus_F_contig1478.3631.1 vs. uniprot
Match: A0A835YVB1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVB1_9STRA) HSP 1 Score: 299 bits (765), Expect = 4.370e-93 Identity = 156/232 (67.24%), Postives = 181/232 (78.02%), Query Frame = 2
Query: 755 VGGGVLSGGLHAVSGPDHLAALLPRIMGQKWHNSMRIGATWGLGHGFSATVIGLAAFFFKDRL--GLGHNERLVAMMGTWTEGLVGVSLIAIGLLGLKESLLDYEETPVAKSAGSAVVEGGGXXXXXXXXXXXGGGKAIFLNGVLHGFSWDGAPSLAPALALSSWGSVLWFLLAYCSGTMVAMSATTTLIGEGSVRVGKALDQPDIPRKLSIVSSMVAITIGAVWLAKAVFF 1444
+GGGVL+GGLHA+SGPDHLAALLPRIMG+ W +MRIGA WGLGHGFSAT+IGLAAFF KDR+ G G R ++ +GT+TE LVGVSLI IGL+GLKESLLD A +A S + GG +AIFLNG+LHGFSWDGAPSLAPALA ++W VLWFLLAYC GTM AMSA TT+IGEGSVRVG+AL+QPDIP++LS+VSS +AI IGAVWL KA FF
Sbjct: 1 MGGGVLAGGLHAISGPDHLAALLPRIMGKAWPVAMRIGAVWGLGHGFSATLIGLAAFFLKDRIQAGGGGGGRWISKLGTYTEVLVGVSLITIGLIGLKESLLDKPHEDDAAAAASEI------SGEKSPAKRGGGQRAIFLNGLLHGFSWDGAPSLAPALACTTWHGVLWFLLAYCGGTMAAMSAATTIIGEGSVRVGQALEQPDIPKRLSVVSSGIAIAIGAVWLVKAAFF 226
BLAST of mRNA_H-canaliculatus_F_contig1478.3631.1 vs. uniprot
Match: A0A4D9DEM4_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DEM4_9STRA) HSP 1 Score: 239 bits (611), Expect = 2.180e-70 Identity = 123/232 (53.02%), Postives = 164/232 (70.69%), Query Frame = 2
Query: 743 AFATVGGGVLSGGLHAVSGPDHLAALLPRIMGQKWHNSMRIGATWGLGHGFSATVIGLAAFFFKDRLGLGHNERLVAMMGTWTEGLVGVSLIAIGLLGLKESLLDYEETPVAKSAGSAVVEGGGXXXXXXXXXXXGGGKAIFLNGVLHGFSWDGAPSLAPALALSSWGSVLWFLLAYCSGTMVAMSATTTLIGEGSVRVGKALDQPDIPRKLSIVSSMVAITIGAVWLAKAV 1438
AF+T+ GG+L+G LHAV+GPDHLAALLPR +G++W+ +MRIGA WGLGHG SA ++G+ AFF K RL + L+ + +TE L+GVSLI IGLLGLKE+ ++ + V + G GKA+FLNG+LHGFSWDG P+LAPALA SW V+ FL +Y GTM++MS T+LIGEG+V+VG+ALD+P+IP+KL+ SS+VAI +G VW KA+
Sbjct: 9 AFSTISGGMLAGSLHAVTGPDHLAALLPRCIGKRWYQAMRIGAVWGLGHGISAIIMGMVAFFLKGRLSTYSHNTLIPKLSLYTEVLIGVSLIIIGLLGLKEAA-HFDVSAVMPLEAEGSIAGSAASGAAKKKAT---GKAVFLNGLLHGFSWDGTPTLAPALAFDSWLPVMTFLCSYGLGTMLSMSTATSLIGEGTVKVGQALDKPNIPKKLAQGSSVVAILVGLVWTVKAL 236
BLAST of mRNA_H-canaliculatus_F_contig1478.3631.1 vs. uniprot
Match: W7TPT7_9STRA (Uncharacterized protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TPT7_9STRA) HSP 1 Score: 242 bits (617), Expect = 1.390e-69 Identity = 124/232 (53.45%), Postives = 165/232 (71.12%), Query Frame = 2
Query: 743 AFATVGGGVLSGGLHAVSGPDHLAALLPRIMGQKWHNSMRIGATWGLGHGFSATVIGLAAFFFKDRLGLGHNERLVAMMGTWTEGLVGVSLIAIGLLGLKESLLDYEETPVAKSAGSAVVEGGGXXXXXXXXXXXGGGKAIFLNGVLHGFSWDGAPSLAPALALSSWGSVLWFLLAYCSGTMVAMSATTTLIGEGSVRVGKALDQPDIPRKLSIVSSMVAITIGAVWLAKAV 1438
AF+T+ GG+L+G LHAV+GPDHLAALLPR +G++W+ +MRIGA WGLGHG SA ++G+ AFF K RL + L+ + +TE L+GVSLI IGLLGLKE+ ++ + V + G G GKA+FLNG+LHGFSWDG P+LAPALA SW V+ FL +Y GTM++MS T+LIGEG+V+VG+ALD+P+IP+KL+ SS+VAI +G VW KA+
Sbjct: 133 AFSTISGGMLAGSLHAVTGPDHLAALLPRCIGKRWYQAMRIGAVWGLGHGISAIIMGMVAFFLKGRLSTYSHSTLIPKLSLYTEVLIGVSLIIIGLLGLKEAA-HFDVSAVMPLEAEGSITGSGASGAAKKKAT---GKAVFLNGLLHGFSWDGTPTLAPALAFDSWLPVMTFLCSYGLGTMLSMSTATSLIGEGTVKVGQALDKPNIPKKLAQGSSVVAILVGLVWTVKAL 360
BLAST of mRNA_H-canaliculatus_F_contig1478.3631.1 vs. uniprot
Match: A0A7S2Y0T2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0T2_9STRA) HSP 1 Score: 229 bits (585), Expect = 1.190e-65 Identity = 127/244 (52.05%), Postives = 166/244 (68.03%), Query Frame = 2
Query: 707 RRLAFVALVNSAAFATVGGGVLSGGLHAVSGPDHLAALLPRIMGQKWHNSMRIGATWGLGHGFSATVIGLAAFFFKDRLGLGHNERLVAMMGTWTEGLVGVSLIAIGLLGLKESLLDYEETPVAKSAGSAVVEGGGXXXXXXXXXXXGGGKAIFLNGVLHGFSWDGAPSLAPALALSSWGSVLWFLLAYCSGTMVAMSATTTLIGEGSVRVGKALDQPDIPRKLSIVSSMVAITIGAVWLAKAV 1438
R LA VA+ ++A+ A+VGGGVLSG LHA+SGPDHLAA++PR +G++W SM++GA WGLGHG S ++GL AF KD+L L + +++ + TWTE LVG+SLI IG LG+KES + AK E G G K+IF NG+LHG SWDG PSLAPALA ++W V+ FL AYC G +V+MS T+LIGEGSVRVG+ D P IP++LS+ SS +AI IG +W K +
Sbjct: 77 RPLATVAMASAASLASVGGGVLSGSLHAISGPDHLAAVVPRCIGKRWWISMQVGALWGLGHGVSGLMMGLFAFLVKDKLNL-NKSPMISNLSTWTEILVGLSLILIGFLGVKESRSFDSDKAAAKE--KLEQESG---------KKTGSFKSIFFNGLLHGLSWDGTPSLAPALAFTTWRPVVGFLSAYCWGVVVSMSMCTSLIGEGSVRVGR--DNPKIPQQLSMFSSGLAIVIGLLWTGKGI 306
BLAST of mRNA_H-canaliculatus_F_contig1478.3631.1 vs. uniprot
Match: A0A7R9ZBQ6_9STRA (Hypothetical protein n=2 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZBQ6_9STRA) HSP 1 Score: 213 bits (543), Expect = 1.340e-59 Identity = 117/232 (50.43%), Postives = 157/232 (67.67%), Query Frame = 2
Query: 755 VGGGVLSGGLHAVSGPDHLAALLPRIMGQKWHNSMRIGATWGLGHGFSATVIGLAAFFFKDRLG-LGHNERLVAMMGTWTEGLVGVSLIAIGLLGLKESLLDYE---ETPVAKSAGSAVVEGGGXXXXXXXXXXXGGGKAIFLNGVLHGFSWDGAPSLAPALALSSWGSVLWFLLAYCSGTMVAMSATTTLIGEGSVRVGKALDQPDIPRKLSIVSSMVAITIGAVWLAKAV 1438
V GGV +GGLHA++GPDHLAALLPR GQ+W+ + RIGA WG+GHG SAT++G+ AF K R+ +G R+V ++ E VG SL+ IGLLG+KE+ ++E E V +S +A E G +A+ NGVLHGFSWDGAPSLAPA+A+++W + FLLAY GTM AM+ TTLIGEG+ + G+ L +PDIP+KLS VSS++AI +G W + A+
Sbjct: 88 VSGGVFAGGLHAIAGPDHLAALLPRCCGQRWYRAGRIGALWGMGHGVSATILGVCAFALKSRMSKMGAFSRVVRGASSFMEIAVGASLVFIGLLGIKEAR-EWEAEIEGGVPQSLSAAAGEDGMKVAQK---------RAVVFNGVLHGFSWDGAPSLAPAIAVATWRGNITFLLAYALGTMGAMTIATTLIGEGTRKAGEVLHRPDIPQKLSYVSSIIAIGVGLFWCSLAL 309
BLAST of mRNA_H-canaliculatus_F_contig1478.3631.1 vs. uniprot
Match: A0A7S4J5D2_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J5D2_9STRA) HSP 1 Score: 213 bits (541), Expect = 2.370e-59 Identity = 115/233 (49.36%), Postives = 155/233 (66.52%), Query Frame = 2
Query: 755 VGGGVLSGGLHAVSGPDHLAALLPRIMGQKWHNSMRIGATWGLGHGFSATVIGLAAFFFKDRLG-LGHNERLVAMMGTWTEGLVGVSLIAIGLLGLKESLLDYEETPVAKSAGSAVVEGGGXXXXXXXXXXXG----GGKAIFLNGVLHGFSWDGAPSLAPALALSSWGSVLWFLLAYCSGTMVAMSATTTLIGEGSVRVGKALDQPDIPRKLSIVSSMVAITIGAVWLAKAV 1438
+ GGV +GGLHA++GPDHLAALLPR GQ+W+ + RIGA WG+GHG SAT++G+ AF K+R+ +G +V + E VG SL+ IGLLG+KE+ ++E A +EGG G +A+ NGVLHGFSWDGAPSLAPA+A+++W + FLLAY GTM AM+ TTTLIGEG+ + G+ L +PDIP+KLS VSS++AI +G W + A+
Sbjct: 85 ISGGVFAGGLHAIAGPDHLAALLPRCCGQRWYRAGRIGALWGMGHGVSATILGVCAFALKNRMSKMGAFSNIVHGASAFMEVAVGASLVFIGLLGIKEAR-EWE----------AEIEGGSPQSLSAAAGEDGVKVAQKRAVVFNGVLHGFSWDGAPSLAPAVAVATWRGNITFLLAYALGTMAAMTITTTLIGEGTRKAGEVLHRPDIPQKLSFVSSIIAIGVGLFWCSLAL 306
BLAST of mRNA_H-canaliculatus_F_contig1478.3631.1 vs. uniprot
Match: A0A0G4EAE2_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EAE2_VITBC) HSP 1 Score: 217 bits (552), Expect = 2.860e-59 Identity = 117/244 (47.95%), Postives = 158/244 (64.75%), Query Frame = 2
Query: 728 LVNSAAFATVGGGVLSGGLHAVSGPDHLAALLPRIMGQKWHNSMRIGATWGLGHGFSATVIGLAAFFFKDRL------GLGHNERLVAMMGTWTEGLVGVSLIAIGLLGLKESLL-DYEETPVAKSAGSAVVEGGGXXXXXXXXXXXGGGKAIFLNGVLHGFSWDGAPSLAPALALSSWGSVLWFLLAYCSGTMVAMSATTTLIGEGSVRVGKALDQPDIPRKLSIVSSMVAITIGAVWLAKAV 1438
++ +A+ TVGGG L+G LHAVSGPDHLAALLP+ +G++W + ++G WGLGHG SA ++G+ AF KDR+ GL H L+ M TWTEGLVG+SLI IG G KE+ D EE A + + G G +F NG+LHGFS DGAP LAP+L+ + W +V FLL+YC+GTM+ MSA + GEGS+R+ +A+D+PDIP++L+ +S A IG VW AKA+
Sbjct: 204 VLPAASIVTVGGGALAGSLHAVSGPDHLAALLPQCLGRRWTGAGKLGLVWGLGHGLSAMIMGMLAFVLKDRIFVMDAAGL-HGGALIERMETWTEGLVGLSLILIGFFGYKEARSWDAEELQAQLDARAKEEQKEGYRDLSASLRR---GLTLFFNGMLHGFSLDGAPGLAPSLSFTRWPAVFLFLLSYCTGTMLTMSACSAAAGEGSIRLTRAVDRPDIPKRLAFGASAFAAGIGIVWFAKAI 443
BLAST of mRNA_H-canaliculatus_F_contig1478.3631.1 vs. uniprot
Match: A0A1Z5K7J2_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K7J2_FISSO) HSP 1 Score: 212 bits (539), Expect = 3.310e-59 Identity = 113/232 (48.71%), Postives = 159/232 (68.53%), Query Frame = 2
Query: 761 GGVLSGGLHAVSGPDHLAALLPRIMGQKWHNSMRIGATWGLGHGFSATVIGLAAFFFKDRL-GLGHNERLVAMMGTWTEGLVGVSLIAIGLLGLKESLLDYEET-----PVAKSAGSAVVEGGGXXXXXXXXXXXGGGKAIFLNGVLHGFSWDGAPSLAPALALSSWGSVLWFLLAYCSGTMVAMSATTTLIGEGSVRVGKALDQPDIPRKLSIVSSMVAITIGAVWLAKAV 1438
GG+ +GGLHA++GPDHLAALLPR GQ+W+ ++R+GA WG+GHG SATV+GL AF K + + ++++A TE VG+SLI IG++G++E+ ++E+ ++S +AVV+ +A+ NG+LHGFSWDGAPSLAPA+A+++WG L FL AY GTM M+ TTLIGEG+ + G+ LD+PDIP+KLS VSS++A+ IGAVW AV
Sbjct: 72 GGLFAGGLHAIAGPDHLAALLPRCCGQRWYRAVRVGALWGMGHGLSATVLGLTAFGLKSTVQNMKGMQKVLAGASHVTEIAVGLSLIVIGVMGIREAR-EWEQDLTTTMGASQSLSAAVVDEVASKHSTQK-------RAVLFNGILHGFSWDGAPSLAPAVAVATWGGSLAFLSAYAIGTMTTMALATTLIGEGTRKAGQVLDRPDIPQKLSFVSSILAMVIGAVWCYLAV 295
BLAST of mRNA_H-canaliculatus_F_contig1478.3631.1 vs. uniprot
Match: A0A1E7FPG4_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FPG4_9STRA) HSP 1 Score: 206 bits (523), Expect = 9.800e-57 Identity = 111/230 (48.26%), Postives = 150/230 (65.22%), Query Frame = 2
Query: 761 GGVLSGGLHAVSGPDHLAALLPRIMGQKWHNSMRIGATWGLGHGFSATVIGLAAFFFKDRLGLGHNERLVAMMGT-WTEGLVGVSLIAIGLLGLKESLL---DYEETPVAKSAGSAVVEGGGXXXXXXXXXXXGGGKAIFLNGVLHGFSWDGAPSLAPALALSSWGSVLWFLLAYCSGTMVAMSATTTLIGEGSVRVGKALDQPDIPRKLSIVSSMVAITIGAVWLAKAV 1438
GG+L G LHA++GPDHLAALLPR GQ+W+N+ RIG WGLGHG S T++G+ + K +L +++ + E VG+SLI IG++GLKE+ + EE P S SAV G G +A+ NG+LHGFSWDGAPSLAPALA++SWG L FL AY +GT+ M+ T+LIGEG+ R G+ ++PD+P+KLS +S++AITIG VW A+
Sbjct: 89 GGILGGALHAIAGPDHLAALLPRCCGQRWYNAGRIGILWGLGHGTSVTILGILGYALKSQLTKASGAKVILTGAAHFMEVAVGLSLIIIGIMGLKEAREWGEEMEELPTY-SLSSAVTPSEGKANN--------GNRAVIFNGLLHGFSWDGAPSLAPALAVASWGGNLAFLSAYAAGTIGVMAIATSLIGEGTRRAGEVFNRPDLPQKLSFFTSLLAITIGVVWCGLAL 309 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1478.3631.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1478.3631.1 >prot_H-canaliculatus_F_contig1478.3631.1 ID=prot_H-canaliculatus_F_contig1478.3631.1|Name=mRNA_H-canaliculatus_F_contig1478.3631.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=369bp MVVIAAKALATGVMLALATSARGFVVPAATIVTSAGRPSGGGAPTSSTPFback to top mRNA from alignment at H-canaliculatus_F_contig1478:17460..24911+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig1478.3631.1 ID=mRNA_H-canaliculatus_F_contig1478.3631.1|Name=mRNA_H-canaliculatus_F_contig1478.3631.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=7452bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1478:17460..24911+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1478:17460..24911+ >mRNA_H-canaliculatus_F_contig1478.3631.1 ID=mRNA_H-canaliculatus_F_contig1478.3631.1|Name=mRNA_H-canaliculatus_F_contig1478.3631.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2214bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1478:17460..24911+ (Hapterophycus canaliculatus Oshoro5f female)back to top |