mRNA_H-canaliculatus_F_contig14681.3580.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14681.3580.1
Unique NamemRNA_H-canaliculatus_F_contig14681.3580.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig14681.3580.1 vs. uniprot
Match: D7G416_ECTSI (ATP-dependent Clp protease proteolytic subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G416_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 7.400e-8
Identity = 28/34 (82.35%), Postives = 33/34 (97.06%), Query Frame = 2 
Query:    2 PFDEVLEDSSRTFYMSPDDAVEYGLIDKVISTTQ 103
            P+DEVLEDSSRTFYMSPDDAVEYGLIDKV+ +++
Sbjct:  263 PYDEVLEDSSRTFYMSPDDAVEYGLIDKVLRSSK 296
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14681.3580.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G416_ECTSI7.400e-882.35ATP-dependent Clp protease proteolytic subunit n=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14681contigH-canaliculatus_F_contig14681:10..698 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size689
Cds size384
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14681.3580.1prot_H-canaliculatus_F_contig14681.3580.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14681 124..507 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929214.0503714-UTR-H-canaliculatus_F_contig14681:9..1231622929214.0503714-UTR-H-canaliculatus_F_contig14681:9..123Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14681 10..123 +
1696845720.717498-UTR-H-canaliculatus_F_contig14681:9..1231696845720.717498-UTR-H-canaliculatus_F_contig14681:9..123Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14681 10..123 +
1622929214.0796063-UTR-H-canaliculatus_F_contig14681:507..6981622929214.0796063-UTR-H-canaliculatus_F_contig14681:507..698Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14681 508..698 +
1696845720.74132-UTR-H-canaliculatus_F_contig14681:507..6981696845720.74132-UTR-H-canaliculatus_F_contig14681:507..698Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14681 508..698 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929214.0653667-CDS-H-canaliculatus_F_contig14681:123..5071622929214.0653667-CDS-H-canaliculatus_F_contig14681:123..507Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14681 124..507 +
1696845720.7272847-CDS-H-canaliculatus_F_contig14681:123..5071696845720.7272847-CDS-H-canaliculatus_F_contig14681:123..507Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14681 124..507 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14681.3580.1

>prot_H-canaliculatus_F_contig14681.3580.1 ID=prot_H-canaliculatus_F_contig14681.3580.1|Name=mRNA_H-canaliculatus_F_contig14681.3580.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=128bp
MWSHFRPMQAFLSNCSARIHVCMISEGIQHQDEQNNNYCSFPVSALSFSP
SLSVEQLLTVFLFSRTSSDRLSLLCTRMYVYVLTCMSSAIQGLSYFTGLA
SMFILRDGTLFKQVFPRVILVSRRKFS*
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mRNA from alignment at H-canaliculatus_F_contig14681:10..698+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14681.3580.1 ID=mRNA_H-canaliculatus_F_contig14681.3580.1|Name=mRNA_H-canaliculatus_F_contig14681.3580.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=689bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14681:10..698+ (Hapterophycus canaliculatus Oshoro5f female)
GCCGTTCGACGAGGTTCTGGAAGATTCGTCAAGAACCTTCTACATGTCTC
CCGATGACGCGGTCGAGTACGGGCTCATTGACAAGGTGATCTCCACAACC
CAACCCCATTCAACATGTGGTCACATTTTCGGCCAATGCAGGCTTTCCTC
TCGAACTGCTCTGCCCGTATCCACGTTTGCATGATTTCTGAGGGCATTCA
ACACCAAGACGAACAAAATAACAATTATTGTTCGTTTCCAGTCTCCGCTC
TCTCTTTCTCTCCCTCTCTCTCTGTCGAGCAACTTCTAACAGTATTTCTC
TTCTCTCGAACATCCTCTGACAGACTTTCTCTTCTGTGTACACGTATGTA
CGTTTATGTCCTTACGTGTATGTCTAGCGCTATTCAAGGGCTGTCATATT
TCACCGGGTTGGCTTCGATGTTCATATTGCGGGATGGCACATTGTTCAAA
CAGGTTTTTCCGCGTGTCATTTTGGTTTCCAGGCGGAAATTTAGTTGAGT
CAATCATTTTTCGATTTTTTTCTGTCCCTTTGTGTCCGGTACTCCCTGTC
GGCAATCGTTGGCAGCCTGATGTCTCTCGCTGTATAAATCTGTGTCGTTC
AATTGTGTGTGCAAGTGTATCGTTCGTGTATGTCTCGCCCTCTTTGATTG
ATGTCATGATTTATCTCCCATGGGATTCTAATATCCGCT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14681:10..698+

>mRNA_H-canaliculatus_F_contig14681.3580.1 ID=mRNA_H-canaliculatus_F_contig14681.3580.1|Name=mRNA_H-canaliculatus_F_contig14681.3580.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=768bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14681:10..698+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTGGTCACATTTTCGGCCAATGCAGGCTTTCCTCTCGAACTGCTCTGC
CCGTATCCACGTTTGCATGATTTCTGAGGGCATTCAACACCAAGACGAAC
AAAATAACAATTATTGTTCGTTTCCAGTCTCCGCTCTCTCTTTCTCTCCC
TCTCTCTCTGTCGAGCAACTTCTAACAGTATTTCTCTTCTCTCGAACATC
CTCTGACAGACTTTCTCTTCTGTGTACACGTATGTACGTTTATGTCCTTA
CGTGTATGTCTAGCGCTATTCAAGGGCTGTCATATTTCACCGGGTTGGCT
TCGATGTTCATATTGCGGGATGGCACATTGTTCAAACAGGTTTTTCCGCG
TGTCATTTTGGTTTCCAGGCGGAAATTTAGTTGAATGTGGTCACATTTTC
GGCCAATGCAGGCTTTCCTCTCGAACTGCTCTGCCCGTATCCACGTTTGC
ATGATTTCTGAGGGCATTCAACACCAAGACGAACAAAATAACAATTATTG
TTCGTTTCCAGTCTCCGCTCTCTCTTTCTCTCCCTCTCTCTCTGTCGAGC
AACTTCTAACAGTATTTCTCTTCTCTCGAACATCCTCTGACAGACTTTCT
CTTCTGTGTACACGTATGTACGTTTATGTCCTTACGTGTATGTCTAGCGC
TATTCAAGGGCTGTCATATTTCACCGGGTTGGCTTCGATGTTCATATTGC
GGGATGGCACATTGTTCAAACAGGTTTTTCCGCGTGTCATTTTGGTTTCC
AGGCGGAAATTTAGTTGA
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