mRNA_H-canaliculatus_F_contig14666.3577.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14666.3577.1
Unique NamemRNA_H-canaliculatus_F_contig14666.3577.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig14666.3577.1 vs. uniprot
Match: A0A6H5KMP7_9PHAE (Ricin B-type lectin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KMP7_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 6.440e-20
Identity = 51/73 (69.86%), Postives = 53/73 (72.60%), Query Frame = 1 
Query:    1 DDAHRDDVTALMVAAQGGHEAVGRLLVGKGADVRAKDEEGFTPLLNXXXXXXXXXXXXXXXXXXDPNDVYTDE 219
            DDAHRDDVTALMVAAQGGHEAV +LLV KGADVRAKDEEGFTPLLN                  DPNDVYTD+
Sbjct:  555 DDAHRDDVTALMVAAQGGHEAVVKLLVEKGADVRAKDEEGFTPLLNAGNFEEVASFLVESGA--DPNDVYTDD 625
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BLAST of mRNA_H-canaliculatus_F_contig14666.3577.1 vs. uniprot
Match: A0A7R9U5G3_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U5G3_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 1.130e-8
Identity = 33/71 (46.48%), Postives = 41/71 (57.75%), Query Frame = 1 
Query:   10 HRDDVTALMVAAQGGHEAVGRLLVGKGADVRAKDEEGFTPLLNXXXXXXXXXXXXXXXXXXDPNDVYTDEE 222
            H+D VTALMVAA GGH  V ++L+   ADV A DEE +TPLLN                  +PNDV+ D+E
Sbjct:  547 HKDGVTALMVAALGGHTEVVKMLLEAEADVTAADEENWTPLLNAVKGNHADLAALLVEHGANPNDVFVDDE 617
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BLAST of mRNA_H-canaliculatus_F_contig14666.3577.1 vs. uniprot
Match: A0A7S1FMT5_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FMT5_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 8.070e-6
Identity = 29/70 (41.43%), Postives = 36/70 (51.43%), Query Frame = 1 
Query:   10 HRDDVTALMVAAQGGHEAVGRLLVGKGADVRAKDEEGFTPLLNXXXXXXXXXXXXXXXXXXDPNDVYTDE 219
            H D VTA+ VAA GGH    + L+  GADV+AKD+E   PL+N                  DPN+ Y DE
Sbjct:  589 HVDGVTAIHVAAMGGHLKCVKSLIEAGADVKAKDDEDKGPLMNAVKGNYGDIASLLVENGADPNETYVDE 658
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BLAST of mRNA_H-canaliculatus_F_contig14666.3577.1 vs. uniprot
Match: A0A8J9T9S8_PHATR (Hypothetical protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9T9S8_PHATR)

HSP 1 Score: 48.5 bits (114), Expect = 1.690e-5
Identity = 31/74 (41.89%), Postives = 36/74 (48.65%), Query Frame = 1 
Query:    1 DDAHRDDVTALMVAAQGGHEAVGRLLVGKGADVRAKDEEGFTPLLNXXXXXXXXXXXXXXXXXXDPNDVYTDEE 222
            D+ H D VTAL VAAQGGH A    LV  GA++  +DEE  T LL                   DPN  Y D+E
Sbjct:   33 DEPHVDGVTALHVAAQGGHLATVEALVEAGANIGIQDEENRTSLLMAIKGNHGEVASALVRGGADPNTPYVDDE 106
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BLAST of mRNA_H-canaliculatus_F_contig14666.3577.1 vs. uniprot
Match: A0A6U3Q8H2_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3Q8H2_9STRA)

HSP 1 Score: 48.5 bits (114), Expect = 9.890e-5
Identity = 31/73 (42.47%), Postives = 36/73 (49.32%), Query Frame = 1 
Query:    4 DAHRDDVTALMVAAQGGHEAVGRLLVGKGADVRAKDEEGFTPLLNXXXXXXXXXXXXXXXXXXDPNDVYTDEE 222
            D H D VTA+ VAAQGGH    + LV  GADV   D+E  +PLL                   DPN VY DE+
Sbjct:  591 DPHVDGVTAVHVAAQGGHLECVKHLVAAGADVTILDDEERSPLLLSVKGNFGEVATELVRAGADPNTVYVDED 663
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14666.3577.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KMP7_9PHAE6.440e-2069.86Ricin B-type lectin domain-containing protein n=2 ... [more]
A0A7R9U5G3_9STRA1.130e-846.48Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S1FMT5_9STRA8.070e-641.43Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A8J9T9S8_PHATR1.690e-541.89Hypothetical protein (Fragment) n=2 Tax=Phaeodacty... [more]
A0A6U3Q8H2_9STRA9.890e-542.47Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14666contigH-canaliculatus_F_contig14666:844..1672 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.5
Seed ortholog evalue1.2e-08
Seed eggNOG ortholog2880.D7FMW2
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-09_002710.1
Exons2
Model size222
Cds size222
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929213.9378726-CDS-H-canaliculatus_F_contig14666:843..9901622929213.9378726-CDS-H-canaliculatus_F_contig14666:843..990Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14666 844..990 +
1696845720.66958-CDS-H-canaliculatus_F_contig14666:843..9901696845720.66958-CDS-H-canaliculatus_F_contig14666:843..990Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14666 844..990 +
1622929213.9574516-CDS-H-canaliculatus_F_contig14666:1597..16721622929213.9574516-CDS-H-canaliculatus_F_contig14666:1597..1672Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14666 1598..1672 +
1696845720.6852841-CDS-H-canaliculatus_F_contig14666:1597..16721696845720.6852841-CDS-H-canaliculatus_F_contig14666:1597..1672Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14666 1598..1672 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14666.3577.1prot_H-canaliculatus_F_contig14666.3577.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14666 844..1672 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14666.3577.1

>prot_H-canaliculatus_F_contig14666.3577.1 ID=prot_H-canaliculatus_F_contig14666.3577.1|Name=mRNA_H-canaliculatus_F_contig14666.3577.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=74bp
DDAHRDDVTALMVAAQGGHEAVGRLLVGKGADVRAKDEEGFTPLLNAVKG
NFEEVAAFLVESGADPNDVYTDEE
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mRNA from alignment at H-canaliculatus_F_contig14666:844..1672+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14666.3577.1 ID=mRNA_H-canaliculatus_F_contig14666.3577.1|Name=mRNA_H-canaliculatus_F_contig14666.3577.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=829bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14666:844..1672+ (Hapterophycus canaliculatus Oshoro5f female)
GACGACGCGCACCGAGACGACGTCACCGCCCTCATGGTGGCGGCCCAGGG
AGGACACGAGGCCGTGGGCCGGCTCCTGGTTGGGAAGGGGGCGGACGTGC
GGGCGAAGGACGAGGAGGGATTCACCCCTCTCCTCAACGCCGTCAAGGTA
AGATAAGGAACCGGGGGTCGGGACGGCGGGAAGCCAAGCAGGAAGCAAAG
CAGGAAGCAAAGCAGGAAGCGTTTCAAGAGAGGCAATGATGAGGGAGTAA
AAAGCTTCGTAGAGGCCGGGCGAAAAGCTCGGTAAAATCTACGCCTCGCA
CGAAGGATGTACCCCAGGAGGTGCCTCCACGGTGTTCATGTCTTTCTTCA
AAAGGCCTTCCGCATGAGGATGTCTGGCGGCCCCAAGAGTATAGGCGCGG
TGGCCCTTGCCAAACGGTGTTGTGCTCTGTGCGTAGCGTGTCGTCGCTGG
CGACCGTCCCGGCGGCAAAAAACACGTAATTGTTTGTCTCCGCGGACCAG
GGCTTGCACACATGCACGGGCGGCATGAGAACGAAAAATCAGCCGAAAGC
ACGCCGGGCACACCGGGGAGAAGCTGGACGCATGCGCCTCTACGAAGGCT
CGCTCGTCGGCCCCCGCTCGATTCCGTGTCACGTGGCGATCTCGTCGATC
CCTCGGGCCAACCCACACACACAGCTCTCTGCACACAACCCCATGCACAC
GCACACCTCCTGAGCCGCCAAGCAACACGCGACGGGCGGCCTGCGCAAAC
GCAGGGAAACTTCGAGGAGGTCGCGGCGTTCCTGGTGGAGAGCGGGGCCG
ACCCGAACGACGTCTACACCGACGAGGAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14666:844..1672+

>mRNA_H-canaliculatus_F_contig14666.3577.1 ID=mRNA_H-canaliculatus_F_contig14666.3577.1|Name=mRNA_H-canaliculatus_F_contig14666.3577.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=444bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14666:844..1672+ (Hapterophycus canaliculatus Oshoro5f female)
GACGACGCGCACCGAGACGACGTCACCGCCCTCATGGTGGCGGCCCAGGG
AGGACACGAGGCCGTGGGCCGGCTCCTGGTTGGGAAGGGGGCGGACGTGC
GGGCGAAGGACGAGGAGGGATTCACCCCTCTCCTCAACGCCGTCAAGGAC
GACGCGCACCGAGACGACGTCACCGCCCTCATGGTGGCGGCCCAGGGAGG
ACACGAGGCCGTGGGCCGGCTCCTGGTTGGGAAGGGGGCGGACGTGCGGG
CGAAGGACGAGGAGGGATTCACCCCTCTCCTCAACGCCGTCAAGGGAAAC
TTCGAGGAGGTCGCGGCGTTCCTGGTGGAGAGCGGGGCCGACCCGAACGA
CGTCTACACCGACGAGGAGGGAAACTTCGAGGAGGTCGCGGCGTTCCTGG
TGGAGAGCGGGGCCGACCCGAACGACGTCTACACCGACGAGGAG
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