mRNA_H-canaliculatus_F_contig14666.3578.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14666.3578.1
Unique NamemRNA_H-canaliculatus_F_contig14666.3578.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14666.3578.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14666contigH-canaliculatus_F_contig14666:1705..2277 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size558
Cds size303
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14666.3578.1prot_H-canaliculatus_F_contig14666.3578.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14666 1975..2277 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929213.8653564-UTR-H-canaliculatus_F_contig14666:1704..17681622929213.8653564-UTR-H-canaliculatus_F_contig14666:1704..1768Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14666 1705..1768 +
1696845720.6352847-UTR-H-canaliculatus_F_contig14666:1704..17681696845720.6352847-UTR-H-canaliculatus_F_contig14666:1704..1768Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14666 1705..1768 +
1622929213.8783908-UTR-H-canaliculatus_F_contig14666:1783..19741622929213.8783908-UTR-H-canaliculatus_F_contig14666:1783..1974Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14666 1784..1974 +
1696845720.6467872-UTR-H-canaliculatus_F_contig14666:1783..19741696845720.6467872-UTR-H-canaliculatus_F_contig14666:1783..1974Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14666 1784..1974 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929213.8896713-CDS-H-canaliculatus_F_contig14666:1974..22771622929213.8896713-CDS-H-canaliculatus_F_contig14666:1974..2277Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14666 1975..2277 +
1696845720.6558294-CDS-H-canaliculatus_F_contig14666:1974..22771696845720.6558294-CDS-H-canaliculatus_F_contig14666:1974..2277Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14666 1975..2277 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14666.3578.1

>prot_H-canaliculatus_F_contig14666.3578.1 ID=prot_H-canaliculatus_F_contig14666.3578.1|Name=mRNA_H-canaliculatus_F_contig14666.3578.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=101bp
MTCAPFPRCENTGWRWNAPPSRRRAECDVRARCTNGTVEAVQHNTNTTHH
AVRKAAPIEAPQTNHYVALPVETFDLALDTPPVATTHHRHLSTPRHTLTT
A
back to top

mRNA from alignment at H-canaliculatus_F_contig14666:1705..2277+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14666.3578.1 ID=mRNA_H-canaliculatus_F_contig14666.3578.1|Name=mRNA_H-canaliculatus_F_contig14666.3578.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=573bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14666:1705..2277+ (Hapterophycus canaliculatus Oshoro5f female)
CACGCTCGGCAACGAGGTGGGGGTCCTGTCGTCGTGTCGCGTGTCTCTCG
GAGGTTTGGTGGTTGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGCC
GCTGCCGTGGCGGTGGCGGTTCCTCAGTTGCTTGTTCCTCCACCCGTTGG
TGGTTGTCGTCATCGTCGTGGACGTGTCGGTTGTGACCTCGGTGTTTTTC
GGCGCCCCTCTGCGAGTTGGACAAGGTAAAGGCTTGCCCTCTGCGCGGCT
GTCCTGAGGGAGACGCCTGCATGACGTGCGCTCCGTTTCCGCGGTGCGAA
AACACGGGGTGGCGGTGGAACGCCCCGCCATCGCGGCGGAGAGCGGAGTG
CGATGTCAGAGCACGATGCACGAACGGCACGGTTGAGGCGGTGCAGCACA
ACACAAACACAACGCACCACGCCGTCCGCAAGGCCGCGCCAATTGAGGCG
CCGCAGACTAACCACTACGTGGCACTGCCCGTAGAGACCTTTGACCTGGC
GCTCGACACCCCACCCGTTGCCACGACACACCATCGCCACCTCTCGACGC
CCCGACACACCCTCACGACGGCC
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14666:1705..2277+

>mRNA_H-canaliculatus_F_contig14666.3578.1 ID=mRNA_H-canaliculatus_F_contig14666.3578.1|Name=mRNA_H-canaliculatus_F_contig14666.3578.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=606bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14666:1705..2277+ (Hapterophycus canaliculatus Oshoro5f female)
ATGACGTGCGCTCCGTTTCCGCGGTGCGAAAACACGGGGTGGCGGTGGAA
CGCCCCGCCATCGCGGCGGAGAGCGGAGTGCGATGTCAGAGCACGATGCA
CGAACGGCACGGTTGAGGCGGTGCAGCACAACACAAACACAACGCACCAC
GCCGTCCGCAAGGCCGCGCCAATTGAGGCGCCGCAGACTAACCACTACGT
GGCACTGCCCGTAGAGACCTTTGACCTGGCGCTCGACACCCCACCCGTTG
CCACGACACACCATCGCCACCTCTCGACGCCCCGACACACCCTCACGACG
GCCATGACGTGCGCTCCGTTTCCGCGGTGCGAAAACACGGGGTGGCGGTG
GAACGCCCCGCCATCGCGGCGGAGAGCGGAGTGCGATGTCAGAGCACGAT
GCACGAACGGCACGGTTGAGGCGGTGCAGCACAACACAAACACAACGCAC
CACGCCGTCCGCAAGGCCGCGCCAATTGAGGCGCCGCAGACTAACCACTA
CGTGGCACTGCCCGTAGAGACCTTTGACCTGGCGCTCGACACCCCACCCG
TTGCCACGACACACCATCGCCACCTCTCGACGCCCCGACACACCCTCACG
ACGGCC
back to top