mRNA_H-canaliculatus_F_contig145.3491.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig145.3491.1
Unique NamemRNA_H-canaliculatus_F_contig145.3491.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig145.3491.1 vs. uniprot
Match: A0A6H5JNQ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNQ3_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 2.390e-27
Identity = 55/67 (82.09%), Postives = 58/67 (86.57%), Query Frame = 1 
Query:    1 MSSQNRSKMGKAFAKMTTACPQQIAGYGMCLHTKSATGLLERDACDEHFKALKRCFQQAAKGVKATR 201
            MSSQNRSKMG+AFAKMTTACPQQIAGYG CL   S  G+LER  CDE FKALKRCFQQAAKG+KATR
Sbjct:    1 MSSQNRSKMGQAFAKMTTACPQQIAGYGTCLQAASTAGMLERGVCDEQFKALKRCFQQAAKGLKATR 67
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BLAST of mRNA_H-canaliculatus_F_contig145.3491.1 vs. uniprot
Match: D7FWR7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWR7_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 7.830e-6
Identity = 72/197 (36.55%), Postives = 86/197 (43.65%), Query Frame = -1 
Query: 1024 QDTIASHVRLEYRDKLKETLGTADGTASGVDRGEPEGMGTYSSTVAHAAPKLVNHAAAGALNHSNMGGIVGPTRPTGSVVAHSPQEQQKQQQQAHTATSDQGVSIKPNSCNKRRASVVFARGAV--TAPAFQPPASLRQ--QDREPATAATMELVSRAQASTATATVGTAGEGGRWQPRRGGVAMVVPTSTRNAVAA 1602
            QDTIAS+VR EYRDKLKE LG  D   SG+ + EP     YSS              AGA       G V   +   +  A  P    +QQQQA TA      S      NK RASV F  GA   T P  Q  A++       +P  A    L  +   + A A   +A +G  W+  R G AM VP  T  A AA
Sbjct: 1049 QDTIASNVRSEYRDKLKEALGPTDARESGIHQQEP-----YSSP-------------AGAFAEDTNTGWV--HKDATAAAAQQP----RQQQQAPTAEHAHKNS------NKTRASVNFDTGAAATTTPPHQQRAAVGMLAAGHKPTPAV---LAPQTATAVAAAASRSAVQGRAWRSGRDGAAMAVPMMTAKATAA 1212
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig145.3491.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JNQ3_9PHAE2.390e-2782.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWR7_ECTSI7.830e-636.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig145contigH-canaliculatus_F_contig145:52661..55714 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-27_006000.1
Exons3
Model size1932
Cds size204
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig145.3491.1prot_H-canaliculatus_F_contig145.3491.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig145 54389..55714 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929202.676813-UTR-H-canaliculatus_F_contig145:52660..543881622929202.676813-UTR-H-canaliculatus_F_contig145:52660..54388Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig145 52661..54388 -
1696845716.0277195-UTR-H-canaliculatus_F_contig145:52660..543881696845716.0277195-UTR-H-canaliculatus_F_contig145:52660..54388Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig145 52661..54388 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929202.6911612-CDS-H-canaliculatus_F_contig145:54388..544151622929202.6911612-CDS-H-canaliculatus_F_contig145:54388..54415Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig145 54389..54415 -
1696845716.0393171-CDS-H-canaliculatus_F_contig145:54388..544151696845716.0393171-CDS-H-canaliculatus_F_contig145:54388..54415Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig145 54389..54415 -
1622929202.7034693-CDS-H-canaliculatus_F_contig145:54889..549971622929202.7034693-CDS-H-canaliculatus_F_contig145:54889..54997Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig145 54890..54997 -
1696845716.0523062-CDS-H-canaliculatus_F_contig145:54889..549971696845716.0523062-CDS-H-canaliculatus_F_contig145:54889..54997Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig145 54890..54997 -
1622929202.715365-CDS-H-canaliculatus_F_contig145:55645..557141622929202.715365-CDS-H-canaliculatus_F_contig145:55645..55714Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig145 55646..55714 -
1696845716.061054-CDS-H-canaliculatus_F_contig145:55645..557141696845716.061054-CDS-H-canaliculatus_F_contig145:55645..55714Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig145 55646..55714 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig145.3491.1

>prot_H-canaliculatus_F_contig145.3491.1 ID=prot_H-canaliculatus_F_contig145.3491.1|Name=mRNA_H-canaliculatus_F_contig145.3491.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=68bp
MSSQNRSKMGKAFAKMTTACPQQIAGYGMCLHTKSATGLLERDACDEHFK
ALKRCFQQAAKGVKATR*
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mRNA from alignment at H-canaliculatus_F_contig145:52661..55714-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig145.3491.1 ID=mRNA_H-canaliculatus_F_contig145.3491.1|Name=mRNA_H-canaliculatus_F_contig145.3491.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3054bp|location=Sequence derived from alignment at H-canaliculatus_F_contig145:52661..55714- (Hapterophycus canaliculatus Oshoro5f female)
ATGTCTTCTCAGAACCGGTCCAAGATGGGTAAGGCCTTCGCCAAAATGAC
CACGGCTTGCCCACAGCAGGTGCGCTCATTTCCACGTCATGGCGGTTGTG
ACAAAAATGTCAAGTCATCGGAAACACCATCATACTGTAGAACAGAGGGG
GGGGGGGGGATACCGACAGTGATCGGAGTATATACTGGCGTATCGTAGAG
GGGTATCCGGTGTCCCGTTTGGTCTTCCAGCGTCGGCTACCCTCTGCTTC
GCCCCTGGGACTACAGTACTGCAATGCTGATATCACTCGCCGAGGTTCCG
CCGCATGGTATTCGGGCTCCCGTTCTCCCTATTTGTCACTGACGAATTCG
TCTCATCTTCTTCTGTCGCGTGGGGGTTGGTTCTTTTTGTGCTTCCGATC
GAGGGTGGCTGCTAGGCACGCTTATCAAGCGGACGATACACTGCTGTGGC
GACGGGATTCATTTGTGGCGGGGGCGTGAGCACGTGTTGGGTGTTCGCAT
GCCCAAGACACTCCAACTTTCCGTCTCTGATTGGACCATGCCTCTCGCGG
CCTCTCCTGCAAGTTTCCGCTGCACGGCGTCCGATTACGCATTCCACGCC
GTCGCTTTCGGAAGAAATCAGCGCATCTCAATCTGCAGTTTGTCCATTTA
GCTGTGCCGTTTTCGTTTGTTGGATGAGCCTCCTGTTCCCCGCCCTCTCC
CTTCACACCTTTCCTAGATCGCCGGGTACGGAATGTGTCTCCACACCAAG
TCCGCCACGGGCTTGTTAGAACGAGACGCGTGCGACGAGCATTTCAAAGC
GCTGAAGCGATGCTTTCAGCAGGCGGTAAGTTCTTGGGGGGACATCCTGA
CGTTCGGGAAACAATATGGCATGGGCATGCCACGGAGTTGGGGATCCCTT
GTGGGTGGATATACATGTGAGAAGGAAACTGTGTTCCAGCCGACGCAAAG
ATGGCACTGTAAGGAATTCAACAAAAACCCTCTTGAGTCGCTATTATTTT
GTCTCAGCGGAGGGTATCCCTTTGGTGTGGTTGATTCTGTCTTTTCAAAA
CCGCGACTGGTCTGCTTCGACCGCGAAAGCAACTTTGTCCGCCGTCGACA
TATCGCCGTCGACGTGATCTCTTGCAAATCCTGCTTCGTCTATGTTCAGC
GCTGGATGCCAACGCCACGTGTCGCACGACACGCGGTAGCGAAGCCTAAA
AACTGACTGGATATTCCGCAACGTTTCTTCGCTGCCGATTTCGCTGTCGC
CACTGGTACTGCAACGCCGATTGGTCGCACCCCCTACGCGCATGGGCAGG
CTAAGGGCGTGAAGGCTACACGATGACGGCGAACGTAGGAGCCCCGACGT
TTGGTTGCTACTATCGTCACGGACTTCAGTAACGAATGCGCATGAAAATA
ACGTGCACGTAGCCATGATCATGGGCACGTGAAAGTAGTAGTCTCGAGGC
TATTGGACCTGCATGGTGTATCCTTTATGGTATGCCACTGCTGCCGCTAC
TGCCCCTGCTGCTGATGGTGATTGTTGTGGGCACTGTTGGAAGTGATGGT
GGGACTGCCGCAGTGAAAGTGGGGGTCATTGGTACTGAGGTGGCCAGAAA
GTATTCGTCGTTGTGGCCGCTTATATCTTAGAGAGGAGCCTCGAGACAGG
AATGCTCGGGGGAGTGTTGTTGTGAAGCGCAGGAGACCGAAGGGATTGAA
CTTGATGTGCACACCTCGCACTTTATTCTACCCGCGACACCGGGACGGGG
CAGAAAAAGAGGTTGCCCAACCGCGAGCGATCAAATGGCTGAGTTGATCG
TGACTATCCATCGTTGACTCTGCAAGTCATGTTTGCTTGTTGAAACTAAG
GGCATGGTGATAAAGTGCACCTGTGCGCCAAGCCTTTTTCTGCCTTTGAT
CATCAGGAGTACTGCATACTTGCGGAGCTCGGAAATCGGAAATTACATCA
ACAACCACCCCCGCATCATTAAAATGCTTGTCATTGGTTCTTGGATGTAA
GCTCTTCGATTTGAAAGGAACCGACTAATGAATCATGAACCAATACAGTT
TGTTGCACATGATAGAGCCCTCTTGTTTTTCAGAGGATGCACACGTGGAC
AAGTGGCGGGTTTAGCAGCAAACGCTTTCCTCTCTCTTTTGATCACGCAG
CGACGGCATTTCTCGTCGACGTTGGCACCACCATGGCGACCCCGCCTCGG
CGTGGTTGCCACCGCCCCCCTTCCCCGGCGGTACCCACTGTTGCTGTTGC
CGTTGATGCTTGCGCACGGCTGACAAGCTCCATCGTGGCTGCTGTCGCTG
GTTCGCGGTCTTGCTGCCGAAGGGAGGCTGGCGGTTGAAATGCTGGTGCT
GTTACCGCTCCTCGGGCAAAAACCACGGACGCTCTTCTCTTGTTGCAGCT
GTTGGGCTTGATGCTAACACCCTGATCCGAGGTTGCTGTATGGGCTTGCT
GCTGCTGCTTCTGCTGCTCTTGTGGTGAGTGTGCGACCACACTGCCTGTT
GGCCTGGTTGGTCCAACTATGCCACCCATGTTGCTGTGGTTGAGAGCACC
CGCCGCGGCGTGATTGACGAGCTTTGGTGCCGCATGTGCGACGGTGCTCG
AATAAGTCCCCATTCCTTCAGGCTCCCCCCTGTCAACCCCGCTTGCCGTG
CCGTCCGCTGTGCCCAGCGTCTCCTTGAGCTTGTCTCGGTATTCCAACCT
CACGTGGCTTGCGATGGTGTCCTGGTATGTGATGGAAATAGGCACGTTGG
TGGCGGGTAGATGGATGCAGCAGCAATGAATTGGTCCTGGCACGCCAGGC
GTACATGCGTTGAGATACGCTTTGATTGCTTATTCTTCCCGCTTCCTCCG
GATGGGGGGGGCCGAGCAGTATCTACGGAGAAGGTTCAAGAGCAAGGAAG
CTATTTCGCCAAGATTCATGAGCCGACTAATAACATTGTGAACGCTTCTG
CGGATGCTCTGCAGCGGGAAAGCTGCCGGTGCTGTGCATTTGGACACGCC
CGAGAAGGCCCCCTTCCAAAATCCTTTCCCTTGATTTGCTCTTGGACTTA
TGAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig145:52661..55714-

>mRNA_H-canaliculatus_F_contig145.3491.1 ID=mRNA_H-canaliculatus_F_contig145.3491.1|Name=mRNA_H-canaliculatus_F_contig145.3491.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=408bp|location=Sequence derived from alignment at H-canaliculatus_F_contig145:52661..55714- (Hapterophycus canaliculatus Oshoro5f female)
ATGTCTTCTCAGAACCGGTCCAAGATGGGTAAGGCCTTCGCCAAAATGAC
CACGGCTTGCCCACAGCAGATGTCTTCTCAGAACCGGTCCAAGATGGGTA
AGGCCTTCGCCAAAATGACCACGGCTTGCCCACAGCAGATCGCCGGGTAC
GGAATGTGTCTCCACACCAAGTCCGCCACGGGCTTGTTAGAACGAGACGC
GTGCGACGAGCATTTCAAAGCGCTGAAGCGATGCTTTCAGCAGGCGATCG
CCGGGTACGGAATGTGTCTCCACACCAAGTCCGCCACGGGCTTGTTAGAA
CGAGACGCGTGCGACGAGCATTTCAAAGCGCTGAAGCGATGCTTTCAGCA
GGCGGCTAAGGGCGTGAAGGCTACACGATGAGCTAAGGGCGTGAAGGCTA
CACGATGA
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