mRNA_H-canaliculatus_F_contig1449.3476.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1449.3476.1
Unique NamemRNA_H-canaliculatus_F_contig1449.3476.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1449.3476.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1449contigH-canaliculatus_F_contig1449:21924..22681 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size760
Cds size756
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929200.9807231-CDS-H-canaliculatus_F_contig1449:21923..226791622929200.9807231-CDS-H-canaliculatus_F_contig1449:21923..22679Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1449 21924..22679 +
1696845715.1842868-CDS-H-canaliculatus_F_contig1449:21923..226791696845715.1842868-CDS-H-canaliculatus_F_contig1449:21923..22679Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1449 21924..22679 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1449.3476.1prot_H-canaliculatus_F_contig1449.3476.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1449 21924..22679 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1449.3476.1

>prot_H-canaliculatus_F_contig1449.3476.1 ID=prot_H-canaliculatus_F_contig1449.3476.1|Name=mRNA_H-canaliculatus_F_contig1449.3476.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=252bp
CDLVSDSTPDLIDFGVQQQPPDSTCKCGVPEKKGREFVSERTVESAVSAA
LMSAPQSVITPSPSGSEKWTSDSGSTSSVTNDKSLMYDLRDAEANREFIQ
IGDKGMIPVLGVGSINLRFHMYDGDGNVKDCDVQLKDVLYAPQMGFNLFS
SWKASHRQTVILDPEGTHLMEGRLNFARGQSSDFLFATRLPNDPNRQVID
VPRLLSTPSRSPDVSQIANSLFDLSLCAETHPDMHLGREVEGVLSDVRPD
GG
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mRNA from alignment at H-canaliculatus_F_contig1449:21924..22681+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1449.3476.1 ID=mRNA_H-canaliculatus_F_contig1449.3476.1|Name=mRNA_H-canaliculatus_F_contig1449.3476.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=758bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1449:21924..22681+ (Hapterophycus canaliculatus Oshoro5f female)
TGCGATTTGGTGTCTGATTCGACTCCTGATTTGATTGATTTTGGTGTGCA
GCAGCAACCCCCTGATTCAACGTGCAAGTGTGGTGTGCCTGAGAAGAAAG
GACGTGAGTTTGTGAGTGAGCGTACGGTGGAATCTGCGGTATCGGCTGCT
TTGATGTCCGCACCCCAATCAGTGATCACCCCCTCCCCCTCTGGAAGTGA
GAAATGGACATCCGACTCTGGATCCACGTCGTCTGTAACGAATGATAAGA
GCCTGATGTACGATTTGCGTGACGCAGAAGCAAACCGAGAGTTCATTCAG
ATCGGGGACAAAGGAATGATTCCCGTGCTAGGAGTAGGAAGCATCAACCT
GCGATTTCACATGTATGATGGAGATGGAAACGTGAAGGACTGTGACGTGC
AGTTGAAGGATGTTCTGTATGCTCCGCAGATGGGATTTAACCTTTTTTCC
TCGTGGAAAGCCTCTCACCGTCAGACCGTGATCCTCGATCCCGAGGGTAC
CCATTTGATGGAAGGGAGACTCAACTTTGCCCGCGGTCAGTCGAGCGATT
TTCTCTTTGCAACGCGGTTACCAAATGATCCCAACAGGCAGGTGATTGAT
GTCCCCCGATTGCTGTCGACTCCGTCTCGCTCGCCCGACGTCTCTCAGAT
TGCGAATTCGCTTTTCGACCTGTCTCTGTGTGCCGAAACACATCCCGACA
TGCACCTCGGTCGGGAAGTCGAGGGAGTTTTGAGTGACGTGAGGCCTGAT
GGTGGTTG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1449:21924..22681+

>mRNA_H-canaliculatus_F_contig1449.3476.1 ID=mRNA_H-canaliculatus_F_contig1449.3476.1|Name=mRNA_H-canaliculatus_F_contig1449.3476.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1512bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1449:21924..22681+ (Hapterophycus canaliculatus Oshoro5f female)
TGCGATTTGGTGTCTGATTCGACTCCTGATTTGATTGATTTTGGTGTGCA
GCAGCAACCCCCTGATTCAACGTGCAAGTGTGGTGTGCCTGAGAAGAAAG
GACGTGAGTTTGTGAGTGAGCGTACGGTGGAATCTGCGGTATCGGCTGCT
TTGATGTCCGCACCCCAATCAGTGATCACCCCCTCCCCCTCTGGAAGTGA
GAAATGGACATCCGACTCTGGATCCACGTCGTCTGTAACGAATGATAAGA
GCCTGATGTACGATTTGCGTGACGCAGAAGCAAACCGAGAGTTCATTCAG
ATCGGGGACAAAGGAATGATTCCCGTGCTAGGAGTAGGAAGCATCAACCT
GCGATTTCACATGTATGATGGAGATGGAAACGTGAAGGACTGTGACGTGC
AGTTGAAGGATGTTCTGTATGCTCCGCAGATGGGATTTAACCTTTTTTCC
TCGTGGAAAGCCTCTCACCGTCAGACCGTGATCCTCGATCCCGAGGGTAC
CCATTTGATGGAAGGGAGACTCAACTTTGCCCGCGGTCAGTCGAGCGATT
TTCTCTTTGCAACGCGGTTACCAAATGATCCCAACAGGCAGGTGATTGAT
GTCCCCCGATTGCTGTCGACTCCGTCTCGCTCGCCCGACGTCTCTCAGAT
TGCGAATTCGCTTTTCGACCTGTCTCTGTGTGCCGAAACACATCCCGACA
TGCACCTCGGTCGGGAAGTCGAGGGAGTTTTGAGTGACGTGAGGCCTGAT
GGTGGTTGCGATTTGGTGTCTGATTCGACTCCTGATTTGATTGATTTTGG
TGTGCAGCAGCAACCCCCTGATTCAACGTGCAAGTGTGGTGTGCCTGAGA
AGAAAGGACGTGAGTTTGTGAGTGAGCGTACGGTGGAATCTGCGGTATCG
GCTGCTTTGATGTCCGCACCCCAATCAGTGATCACCCCCTCCCCCTCTGG
AAGTGAGAAATGGACATCCGACTCTGGATCCACGTCGTCTGTAACGAATG
ATAAGAGCCTGATGTACGATTTGCGTGACGCAGAAGCAAACCGAGAGTTC
ATTCAGATCGGGGACAAAGGAATGATTCCCGTGCTAGGAGTAGGAAGCAT
CAACCTGCGATTTCACATGTATGATGGAGATGGAAACGTGAAGGACTGTG
ACGTGCAGTTGAAGGATGTTCTGTATGCTCCGCAGATGGGATTTAACCTT
TTTTCCTCGTGGAAAGCCTCTCACCGTCAGACCGTGATCCTCGATCCCGA
GGGTACCCATTTGATGGAAGGGAGACTCAACTTTGCCCGCGGTCAGTCGA
GCGATTTTCTCTTTGCAACGCGGTTACCAAATGATCCCAACAGGCAGGTG
ATTGATGTCCCCCGATTGCTGTCGACTCCGTCTCGCTCGCCCGACGTCTC
TCAGATTGCGAATTCGCTTTTCGACCTGTCTCTGTGTGCCGAAACACATC
CCGACATGCACCTCGGTCGGGAAGTCGAGGGAGTTTTGAGTGACGTGAGG
CCTGATGGTGGT
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