mRNA_H-canaliculatus_F_contig1449.3473.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig1449.3473.1 vs. uniprot
Match: D8LQN1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQN1_ECTSI) HSP 1 Score: 1090 bits (2820), Expect = 0.000e+0 Identity = 723/1332 (54.28%), Postives = 890/1332 (66.82%), Query Frame = 1
Query: 22 DDGPVPREE-MEIPGFPRPKKKEGFAGSLQGHLERLSANAKSIHHVLEALCGGLDRLEKKMDTSSAQQVESRLANIVHHMSGEADEDTMSAWSSLGGGGGGL-GSPAELGPTLSLRRRSSFGAHMSSFIEGP---FHDPPTTLEVELADVGRGGDSGNDVSGTFGGVVDRAKEVA---PAGGRNTTAADQTGLSSGDGDVTGALPGATNQEPTAITAVTKEEKNQDLAITAAKNLEDADAARQPPSELGENKLVESSTADRNGSNGESKNRADPSAERLNEILAGAEATNQFHP-RRRSNQDDQSDGSSSKTNSARSRDEGEARMLLARMDGPVNGGSEHGEGRAGSGEGSEYPPVALAAEGSVESGGSDARYIARQRWIWAFGRVCQLVRRRKRKQFEIMSQRATDRTVRMGSRVSVVEKRLDETREHLLVVDRLKDKSGAHTTKIQNLGETVTALCKLFGVEDRLERTVQDSQVCLETSFQSDLSDLEARLTRGQQEIEKSLDSDIQGQGAKLEDIDDRYARSEDALRXXXXXXXXXXXXXXXXXXXXSEIERQLRVDQGRLDTLENLKKAHQRRLSEFRVKLENSTVSAGSAIPIETEPVETDEERIARLLRAAGSATAFLSADLGKVLATSGRGGSDLSSATSTAMNESAAH---GESLRAQTAGCNDDDGTDMMEKLRHISVEAAEYSRLCI-------------IKPDDNDVGVFS-INAAVERAEFLCGHIEALLSAH----GGSKNXXXXXXXXXXXXXXXXXXXXXXXXXXXDTEDKLSANTDVP-SIADVVCPNGRKDLVQRLTTARDALLPVIGERTNLGSLRVALLGLTASVETSLKQRQAYDLLEARWEDLSSRLSGLANSVNDIDCSLRSNGQNRRGSALEDDGGGGVTEDDLDDRLGYKADVSWVQRELQRLWEALDSRAMASVAVVASGT---TIAGQGDDGSRPRSAPSSNNRTGDTANNKDSSEPETAREEESDVDSSPSLTLNSRVASTLLPSSS-SPLIGSGGVHGGVGSQQAEYRSRSSFNEGTSLIKDLLRKTSRLEQQMSSKADNDEVMKALSSVGNKLRKVGVVIPAMQEELSQKIERKDLAKLVALVSSGGTSSDAPPCEHGSGNAPNEDKNSSNTAVLASRLNSKFRCLSCDRPLPALGPPGPPKLNASGLSIAGAGAPRSPQRTKAQPGQQRLGQTAGGS-GGNASSRPSSPAVASPTLEDVGDVAGWGSAGGEGSAMTPGRASDGDSAYGNSLKEGAGSRRXXXXXXXXXXGGEQPGGRLEPLGANGEHMAAVLSRYPRMMPPPSRIRTAAGGGIGSRPGSSTG 3909
DDGP E+ +EIPGFP+P K EGF G+LQGHLE+LS+NA+SIHHVLE LCGGLDRLEKKMDT+S+Q VE+RLANIVHH+SGEADEDTMSAWSS+ GG GSP +LG SLRRR SFG M+S E F + +L+ ELA+VGR GD DV +FGGVV+RAK+VA GGR ++ + + G+ + A +PT + A +A++ LE+ D Q PSE + + S T GS E ++R P+ +++G E TN HP RRRSNQDDQSDGS+SK NSAR+ + M++++ + V G S GE GEG+++ A + + S++SG D+R IARQRWIWAFGR+CQLVRRRKRKQFEIMSQRATDRTVRMGSRVSVVEKRLDET EHLLVV++L+DKSG+HT +I+NL E V LCKL G+E++ V ++ +E F+SD+++LE RL G + +I+ G KLED+DDRYARSE+ALR XXXXXXXXXXXX VD+ RL +LENLKKAHQRRLSE RV+LE+ T +AG A+PIETEP ETD ER+ARLL+ AG+AT FL+ DL K+L ++G D AT+TA + + A+ G+ L A+++ N D +++LRH+SV A E SRLC I PD G S ++AAV R E LCGHI+ LLS SKN + + L N V I D+VCPNGRKDLVQRLT ARDALLPVIGER+++GSLRVA LGLTASV +L+++QA DL+E RW DL R+SGL SV+DI SL G +R GS D G +DL++RLG KADVSWVQRELQRLW+AL++RAMA+V ++ T G G D SRPRSAP +N +K++ PETA +EE D+D+SPS NSRV S LPSS+ S +G Q A R+SFNEG SLIKDL++KTSRLEQQM++KADN+EVMKAL+SVGNKLRKVG+VIPAMQEEL+ KIERKDLAKLV++VS+GG + + PP H N +AV+ASRLNSKFRCLSCDRPLPALGPPGPPKL ASGLS+AGAG PRSPQ+T +Q QRL TA G + +SRP SPA SP +EDVGDVAGWG G + M PG ASD +SAYGN K+ AG+RR +QP GRLEPLGANGEHMA VLSRYPRMMPPPSRIRTAAGGGIGSRP SS+G
Sbjct: 39 DDGPESLEDGLEIPGFPKPSKPEGFTGNLQGHLEKLSSNARSIHHVLETLCGGLDRLEKKMDTNSSQ-VEARLANIVHHISGEADEDTMSAWSSIAGGXXXXAGSPTDLGTAPSLRRRGSFGMQMASCSEDSPFDFRNDKISLDEELANVGRDGDESEDVVTSFGGVVERAKDVALQNEGGGRGEV--ERAAILTAPGNSSSAQA---TLKPTVVAA----------GPSASETLENTDE-HQNPSEAKDLSSISSPTD--TGSPRE-EDRELPTG-----LVSGGEDTNDLHPQRRRSNQDDQSDGSNSKLNSARAEEGRNDVMVVSKQESSVGGESVLGEEAEVPGEGNDFVKTAFSPQASIDSGVLDSRLIARQRWIWAFGRICQLVRRRKRKQFEIMSQRATDRTVRMGSRVSVVEKRLDETTEHLLVVNQLRDKSGSHTAQIKNLNEMVKELCKLLGMEEKFNGIVHATKKMVEEKFKSDMTELETRLASGHRXXXXXXXXEIRRNGTKLEDMDDRYARSEEALRRAEERIGEXXXXXXXXXXXXXXXXXXXXVDEDRLGSLENLKKAHQRRLSELRVQLESGTPAAGGAVPIETEPEETDAERMARLLKTAGTATEFLAEDLDKILDSNGGNAGD---ATATAADNAEANHELGQVLSARSSASNVDHA---LQELRHVSVNAVECSRLCNDVASASGQAERDEIGPDGGGAGSDSNVDAAVRRVEALCGHIQDLLSTQDKNISSSKNKAELSATGEI-----------------ERQGSLEGNGGVGLKIDDIVCPNGRKDLVQRLTAARDALLPVIGERSSVGSLRVAFLGLTASVRANLEEKQARDLMEERWNDLRGRVSGLDTSVSDIKDSLHDEGHHRYGSLDMDSDNG----EDLEERLGCKADVSWVQRELQRLWDALNARAMAAVGAMSPRTGAGVTEGHGGDPSRPRSAPPTNY-------DKENHNPETAGQEEGDLDASPSQ-ANSRVISGSLPSSALSTALGXXXXXXXXXXQGAVGGRRASFNEGASLIKDLMKKTSRLEQQMATKADNEEVMKALASVGNKLRKVGIVIPAMQEELANKIERKDLAKLVSMVSNGGGTGEPPPGGH-----EGPHNNGDGSAVVASRLNSKFRCLSCDRPLPALGPPGPPKLGASGLSMAGAGTPRSPQKTSSQ---QRLKLTAAEEPGADKNSRPGSPATTSPAVEDVGDVAGWGR--GSSNMMIPGGASDMESAYGNGGKD-AGARRRQKQQHRQHHEMDQPPGRLEPLGANGEHMAGVLSRYPRMMPPPSRIRTAAGGGIGSRPSSSSG 1299
BLAST of mRNA_H-canaliculatus_F_contig1449.3473.1 vs. uniprot
Match: A0A6H5LPN1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LPN1_9PHAE) HSP 1 Score: 953 bits (2464), Expect = 0.000e+0 Identity = 694/1404 (49.43%), Postives = 854/1404 (60.83%), Query Frame = 1
Query: 13 FGTDDGPVPREE-MEIPGFPRPKKKEGFAGSLQGHLERLSANAKSIHHVLEALCGGLDRLEKKMDTSSAQQVESRLANIVHHMSGEADEDTMSAWSSLGGGGGGL-GSPAELGPTLSLRRRSSFGAHMSSFIEGP---FHDPPTTLEVELADVGRGGDSGNDVSGTFGGVVDRAKEVA--PAGGRNTTAADQTGLSSGDGDVTGALPGATNQEPTAITAVTKEEKNQDLAITAAKNLEDADAARQPPSELGENKLVESSTADRNGSNGESKNRADPSAERLNEILAGAEATNQFHP-RRRSNQDDQSDGSSSKTNSARSRDEGEARMLLARMDGPVNGG----------------SEHGEGRAGSGEGSEYPPVALAAEGSVESGGSDARYIARQRWIWAFGRVCQLVRRRKRKQFEIMSQRATDRTVRMGSRVSVVEKRLDETREHLLVVDRLKDKSGAHTTKIQNLGETVTALCKLFGVEDRLERTVQDSQVCLETSFQSDLSDLEARLTRGQQEIEKSLDSDIQGQGAKLEDIDDRYARSEDALRXXXXXXXXXXXXXXXXXXXXSEIERQLRVDQGRLDTLENLKKAHQRRLSEFRVKLENSTVSAGSAIPIETEPVETDEERIARLLRAAGSATAFLSADLGKVLATSGRGGSDLSSATSTAMNESAAHGESLRAQTAGCNDDDGTDMMEKLRHISVEAAEYSRLCI-------------IKPDDNDVGV-FSINAAVERAEFLCGHIEALLSAHGGSKNXXXXXXXXXXXXXXXXXXXXXXXXXXXDTEDKLSANTDVP-SIADVVCPNGRKDLVQRLTTARDALLPVIGERTNLGSLRVALLGLTASVETSLKQRQAYDLLEARWEDLSSRLSGLANSVNDIDCSLRSNGQNRRGSALEDDGGGGVTEDDLDDRLGYKADVSWVQRELQRLWEALDSRAMASVAVVASGTTIA---GQGDDGSRPRSAPSSNNRTGDTANNKDSSEPETAREEESDVDSSPSLTLNSRVASTLLPSSSSPLIGSGGVHGGVGSQQAEYRSRSSFNEGTSLIKDLLRKTSRLEQQ--------------------------------------------------------------MSSKADNDEVMKALSSVGNKLRKVGVVIPAMQEELSQKIERKDLAKLVALVSSGGTSSDAPPCEHGSGNAPNEDKNSSNTAVLASRLNSKFRCLSCDRPLPALGPPGPPKLNASGLSIAGAGAPRSPQRTKAQPGQQRLGQTAGGS-GGNASSRPSSPAVASPTLEDVGDVAGWGSAGGEGSAMTPGRASDGDSAYGNSLKEGAGSRRXXXXXXXXXXGGEQPGGRLEPLGANGEHMAAVLSRYPRMMPPPSRIRTAAGGGIGSRPGSSTG 3909
F TDDGP E+ +EIPGFP+P K GF G+LQ HLE+LS+NA SIHHVLE LCGGLDRLEKK+DT+S+Q VE+RLANIVHH+SGEADEDTMSAWSSL GG GSP ELG SLRRR SFG M+S E P F + +L+ ELA VGRGGD DV +F GVV+RAK+V+ GGR ++ + + G+ + A AT + T + E T K +E Q PSE K + S + N + ++R P+ +++G E TN HP RRRSNQDDQSDGS+SK NSAR+ + M++++ V S GE G GEG+++ A + + S++SG D+R QRWIWAFGR+CQLVRRRKRKQFEIMSQRATDR VRMGSRVSVVEKRLDET E LLVV++L+DKSG+HT +I+NL E V LCKL G+E+++ V ++ +E F+SD+++LE R+ KLED+DDRYARSE+ALR XXXXXXXXXXXXXXXXX E RV+LE+ T +AG A+PIETEP ET E+R+ARLL+ A +AT FL+ DL K+L +G D AT+TA + A+ E + Q+A +D + +++LRH+S++A E SRLC I PD G +++AAV RAE LCG I+ LLSAH KN + + L N + + D+VC NGRKDLVQRLT ARDALLPVIGER+++GSLRV LLGLTASV +L+++QA L+E RW DL R+S L SV+DI SL G +R GS D G +DL++RLG KADVSWVQRELQRLW+AL++R MA+V ++ T GQG D SRPRS PS T +K++ PETA + E D+++SPS NSRV S LPSS+ Q A R+S NEG SLIKDL++KTSRLEQQ M++KADN+EVMKALSSVGNKLRKVG+VIPAMQEEL+ KIERKDLAKLV++VS+GG + + PP H P+ + +SS AV+ASRLNSKFRCLSCDRPLPALGPPGPPKL ASGLSIAGAG PRSPQ+ K+Q QRL TA G ++RP SPA SP +EDVGDVAGWG G PG ASD +S YGN K+ AG+RRXXXXX G +QP GRLEPLGANGEHMA VLSRYPRMMPPPSRIRTAAGGGIGSRP SS G
Sbjct: 8 FATDDGPESLEDGLEIPGFPKPSKPGGFMGNLQEHLEKLSSNASSIHHVLETLCGGLDRLEKKVDTNSSQ-VEARLANIVHHISGEADEDTMSAWSSLAGGXXXXAGSPTELGTVPSLRRRGSFGMQMASCGEDPPFDFRNDKISLDEELAKVGRGGDESEDVVTSFEGVVERAKDVSLKNEGGRRGEV-ERAAILNTPGNSSSAQ--ATLKTTVVATRPSASE-------TLEKTVE-----HQNPSEA---KYLSSIWSPTNAGSPREEDRDLPTG-----LVSGGEDTNDLHPPRRRSNQDDQSDGSNSKLNSARAEEGRNDVMVVSKQASSVXXXXXXXXXXXXXXXXXXESVLGEEAEGPGEGNDFVKTAFSPQASIDSGVLDSR----QRWIWAFGRICQLVRRRKRKQFEIMSQRATDRAVRMGSRVSVVEKRLDETTEQLLVVNQLRDKSGSHTAQIKNLNEMVKELCKLLGMEEKINGIVHATKKLMEEKFKSDMTELETRIXXXXXXXXXXXXXXXXXXXXKLEDMDDRYARSEEALRRAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELRVQLESGTPAAGGAVPIETEPEETGEDRMARLLKTASTATEFLAEDLDKILDNNGGNAGD---ATATAAGNAEANHELGQVQSARSSDSNIDHALQELRHVSIDAVECSRLCNDVANASGQAEGDEIGPDGGGAGSDHNVDAAVCRAEALCGRIQDLLSAH--EKNISSNKKKAELSATFEI-----------ERQGSLEGNGGMGLKLDDIVCSNGRKDLVQRLTAARDALLPVIGERSSVGSLRVTLLGLTASVRANLEEKQARKLMEERWNDLRGRVSELNTSVSDIKDSLLDEGHHRYGSLDMDSDNG----EDLEERLGCKADVSWVQRELQRLWDALNARTMAAVGALSPRTGAGVREGQGGDPSRPRSTPS-------TDYDKENHNPETAGQAEGDLEASPSQ-ANSRVISGSLPSSALSTALGXXXXXXXXXQGAVGGRRASVNEGASLIKDLMKKTSRLEQQRLHERVLVMFHFSAMTVCCMFTPPLSLLPSWLGDATSRFDFFDFVLHPRPRYHAVWNPTVRKMATKADNEEVMKALSSVGNKLRKVGIVIPAMQEELANKIERKDLAKLVSMVSNGGGTGEPPPGGH---EGPHNNGDSS--AVVASRLNSKFRCLSCDRPLPALGPPGPPKLGASGLSIAGAGTPRSPQKPKSQ---QRLKLTAAEEPGAEKNARPGSPATTSPAVEDVGDVAGWG--GXXXXXXXPGGASDMESTYGNGGKD-AGARRXXXXXHRQQHGMDQPPGRLEPLGANGEHMAGVLSRYPRMMPPPSRIRTAAGGGIGSRPSSSGG 1344 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1449.3473.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1449.3473.1 >prot_H-canaliculatus_F_contig1449.3473.1 ID=prot_H-canaliculatus_F_contig1449.3473.1|Name=mRNA_H-canaliculatus_F_contig1449.3473.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=1309bp MTDGFGTDDGPVPREEMEIPGFPRPKKKEGFAGSLQGHLERLSANAKSIHback to top mRNA from alignment at H-canaliculatus_F_contig1449:1252..9805- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig1449.3473.1 ID=mRNA_H-canaliculatus_F_contig1449.3473.1|Name=mRNA_H-canaliculatus_F_contig1449.3473.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=8554bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1449:1252..9805- (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1449:1252..9805- >mRNA_H-canaliculatus_F_contig1449.3473.1 ID=mRNA_H-canaliculatus_F_contig1449.3473.1|Name=mRNA_H-canaliculatus_F_contig1449.3473.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=7854bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1449:1252..9805- (Hapterophycus canaliculatus Oshoro5f female)back to top |