mRNA_H-canaliculatus_F_contig1445.3459.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1445.3459.1
Unique NamemRNA_H-canaliculatus_F_contig1445.3459.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1445.3459.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1445contigH-canaliculatus_F_contig1445:1030..1735 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size408
Cds size408
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929197.4712284-CDS-H-canaliculatus_F_contig1445:1029..11671622929197.4712284-CDS-H-canaliculatus_F_contig1445:1029..1167Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1445 1030..1167 +
1696845713.9066427-CDS-H-canaliculatus_F_contig1445:1029..11671696845713.9066427-CDS-H-canaliculatus_F_contig1445:1029..1167Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1445 1030..1167 +
1622929197.4869196-CDS-H-canaliculatus_F_contig1445:1465..17351622929197.4869196-CDS-H-canaliculatus_F_contig1445:1465..1735Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1445 1466..1735 +
1696845713.919822-CDS-H-canaliculatus_F_contig1445:1465..17351696845713.919822-CDS-H-canaliculatus_F_contig1445:1465..1735Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1445 1466..1735 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1445.3459.1prot_H-canaliculatus_F_contig1445.3459.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1445 1030..1735 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1445.3459.1

>prot_H-canaliculatus_F_contig1445.3459.1 ID=prot_H-canaliculatus_F_contig1445.3459.1|Name=mRNA_H-canaliculatus_F_contig1445.3459.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=136bp
EDAEQPAPVPSELSAEGGDEVSAEGEMAEVLTSADGDVAVADAPIDDNTG
TEAGAPNDTPSDLADGSSDAAERSKEEETPATEAEQPAPVASVAPSEAAC
ELPEAGELLKVVVPVEDDAAAEAPIDVSKGSSFAF*
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mRNA from alignment at H-canaliculatus_F_contig1445:1030..1735+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1445.3459.1 ID=mRNA_H-canaliculatus_F_contig1445.3459.1|Name=mRNA_H-canaliculatus_F_contig1445.3459.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=706bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1445:1030..1735+ (Hapterophycus canaliculatus Oshoro5f female)
GAAGACGCCGAACAACCCGCCCCTGTCCCATCAGAGCTTAGCGCTGAGGG
TGGGGATGAGGTGTCCGCGGAGGGGGAAATGGCGGAGGTCTTGACGTCGG
CAGACGGTGATGTTGCCGTCGCCGATGCACCAATCGATGTGAGTCTGATT
GTGATTCGATTCAAGGCCATACTGGGCCAGGCCGCTAGTGCTATGTCACG
CAGTCCTCTATGGTGTCTACAGTTTCTGCTTCTTTTGCAGATCGATTGAG
GCATTCCCCGACGTGCCTTTTACTCCTTCGGGAGTGCCTAGATCGTTCCC
ATTAGAGTCTGTGGTCGTGATCGCAGAAGCTACCTTTGCGCCCAAAGGCT
GCTTGCGCCCGGTCACATGTGGGCGTATCACATCATGGACTCTCCCCGGC
CGCCACGTATCGAATCTCTGACCATTTGTTTCAAAGGACAACACCGGCAC
CGAAGCAGGAGCGCCTAACGACACTCCTTCAGACCTTGCCGATGGTAGTA
GCGATGCAGCGGAGAGGTCGAAGGAGGAGGAGACACCGGCGACGGAGGCC
GAACAGCCCGCTCCTGTCGCCTCGGTGGCCCCTTCGGAAGCCGCATGCGA
GTTACCTGAGGCGGGAGAATTGCTGAAGGTTGTAGTGCCAGTTGAAGATG
ACGCCGCCGCCGAAGCACCAATCGATGTGAGTAAAGGATCGTCATTTGCG
TTTTAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1445:1030..1735+

>mRNA_H-canaliculatus_F_contig1445.3459.1 ID=mRNA_H-canaliculatus_F_contig1445.3459.1|Name=mRNA_H-canaliculatus_F_contig1445.3459.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=816bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1445:1030..1735+ (Hapterophycus canaliculatus Oshoro5f female)
GAAGACGCCGAACAACCCGCCCCTGTCCCATCAGAGCTTAGCGCTGAGGG
TGGGGATGAGGTGTCCGCGGAGGGGGAAATGGCGGAGGTCTTGACGTCGG
CAGACGGTGATGTTGCCGTCGCCGATGCACCAATCGATGAAGACGCCGAA
CAACCCGCCCCTGTCCCATCAGAGCTTAGCGCTGAGGGTGGGGATGAGGT
GTCCGCGGAGGGGGAAATGGCGGAGGTCTTGACGTCGGCAGACGGTGATG
TTGCCGTCGCCGATGCACCAATCGATGACAACACCGGCACCGAAGCAGGA
GCGCCTAACGACACTCCTTCAGACCTTGCCGATGGTAGTAGCGATGCAGC
GGAGAGGTCGAAGGAGGAGGAGACACCGGCGACGGAGGCCGAACAGCCCG
CTCCTGTCGCCTCGGTGGCCCCTTCGGAAGCCGCATGCGAGTTACCTGAG
GCGGGAGAATTGCTGAAGGTTGTAGTGCCAGTTGAAGATGACGCCGCCGC
CGAAGCACCAATCGATGTGAGTAAAGGATCGTCATTTGCGTTTTAGGACA
ACACCGGCACCGAAGCAGGAGCGCCTAACGACACTCCTTCAGACCTTGCC
GATGGTAGTAGCGATGCAGCGGAGAGGTCGAAGGAGGAGGAGACACCGGC
GACGGAGGCCGAACAGCCCGCTCCTGTCGCCTCGGTGGCCCCTTCGGAAG
CCGCATGCGAGTTACCTGAGGCGGGAGAATTGCTGAAGGTTGTAGTGCCA
GTTGAAGATGACGCCGCCGCCGAAGCACCAATCGATGTGAGTAAAGGATC
GTCATTTGCGTTTTAG
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