mRNA_H-canaliculatus_F_contig14358.3411.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14358.3411.1
Unique NamemRNA_H-canaliculatus_F_contig14358.3411.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14358.3411.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14358contigH-canaliculatus_F_contig14358:270..1139 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size309
Cds size282
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14358.3411.1prot_H-canaliculatus_F_contig14358.3411.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14358 270..1112 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929190.4205766-CDS-H-canaliculatus_F_contig14358:269..4061622929190.4205766-CDS-H-canaliculatus_F_contig14358:269..406Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14358 270..406 -
1696845710.8272488-CDS-H-canaliculatus_F_contig14358:269..4061696845710.8272488-CDS-H-canaliculatus_F_contig14358:269..406Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14358 270..406 -
1622929190.4343827-CDS-H-canaliculatus_F_contig14358:967..11121622929190.4343827-CDS-H-canaliculatus_F_contig14358:967..1112Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14358 968..1112 -
1696845710.836381-CDS-H-canaliculatus_F_contig14358:967..11121696845710.836381-CDS-H-canaliculatus_F_contig14358:967..1112Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14358 968..1112 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929190.4488494-UTR-H-canaliculatus_F_contig14358:1112..11391622929190.4488494-UTR-H-canaliculatus_F_contig14358:1112..1139Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14358 1113..1139 -
1696845710.846668-UTR-H-canaliculatus_F_contig14358:1112..11391696845710.846668-UTR-H-canaliculatus_F_contig14358:1112..1139Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14358 1113..1139 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14358.3411.1

>prot_H-canaliculatus_F_contig14358.3411.1 ID=prot_H-canaliculatus_F_contig14358.3411.1|Name=mRNA_H-canaliculatus_F_contig14358.3411.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=94bp
MWSHPTTLRALIAAGASLERPTRVDGTRPLHIAARYARSDVVRDLLLKGA
EKDAKNFRGFTALHAAAASNKVEAISLLLAAGAGIDIPAGLQG*
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mRNA from alignment at H-canaliculatus_F_contig14358:270..1139-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14358.3411.1 ID=mRNA_H-canaliculatus_F_contig14358.3411.1|Name=mRNA_H-canaliculatus_F_contig14358.3411.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=870bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14358:270..1139- (Hapterophycus canaliculatus Oshoro5f female)
GGCTACCGTCCGGTTCACTACGCTGCCATGTGGAGCCACCCGACCACCCT
CAGGGCCCTCATCGCCGCGGGGGCGTCCCTGGAGCGCCCCACCCGCGTCG
ACGGTACCAGGCCTTTGCACATCGCCGCGCGCTACGCACGCAGCGATGTT
GTCCGGGACCTCCTCCTAAAGGGTAAGCAGCACGGGAGGACCATGTTACT
GCTATGATTGGCAGACCTTGTATCGCGCTTTCAAGCCGGCAACATGCCAA
TCTTCGTCGGGGAATGCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCGTTGCCTCCTCCGCGCCGCCACCGGCGCCACCGCCGCATCT
GCCGTCGCCGTTGTCGGCGGCGGCGTTGTCATTCGGTGACGATCGTGACG
CTGGCGGTTTGTCGAAAGGCGAAAAGCTTGCAAAAAAAAGCAAGTGACTC
ATCTGACACGAATCAAAATATTTTCCCTCCATGCTGAACCCTCGCTGTAA
GTAATTCAATACACTCTCCCTGGGTCGCTAAAGTTTGTCTTAAGTGAGGG
TATTCCTTTGGTGCTGGCGACTCATTTTCCTAAAGATCATCCCGCGTTAA
ATTTTCTCTTCGATCTCGGCTTGGCCTATCCGTAGTCGCCGAGCGGGTAG
ACAGGTGTCTAGTCCAAGGAACGACAAGGCGCAGACTGTATCTGAAGGCG
CTTCGTCGCTCAACCACCCGCGAATATTCCCAGGTGCAGAAAAGGACGCC
AAGAACTTCAGGGGCTTCACGGCGCTCCACGCTGCCGCCGCGTCCAACAA
GGTAGAGGCCATCTCGCTGCTGCTCGCTGCTGGAGCGGGGATCGACATTC
CCGCCGGCCTTCAGGGGTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14358:270..1139-

>mRNA_H-canaliculatus_F_contig14358.3411.1 ID=mRNA_H-canaliculatus_F_contig14358.3411.1|Name=mRNA_H-canaliculatus_F_contig14358.3411.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=564bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14358:270..1139- (Hapterophycus canaliculatus Oshoro5f female)
ATGTGGAGCCACCCGACCACCCTCAGGGCCCTCATCGCCGCGGGGGCGTC
CCTGGAGCGCCCCACCCGCGTCGACGGTACCAGGCCTTTGCACATCGCCG
CGCGCTACGCACGCAGCGATGTTGTCCGGGACCTCCTCCTAAAGGATGTG
GAGCCACCCGACCACCCTCAGGGCCCTCATCGCCGCGGGGGCGTCCCTGG
AGCGCCCCACCCGCGTCGACGGTACCAGGCCTTTGCACATCGCCGCGCGC
TACGCACGCAGCGATGTTGTCCGGGACCTCCTCCTAAAGGGTGCAGAAAA
GGACGCCAAGAACTTCAGGGGCTTCACGGCGCTCCACGCTGCCGCCGCGT
CCAACAAGGTAGAGGCCATCTCGCTGCTGCTCGCTGCTGGAGCGGGGATC
GACATTCCCGCCGGCCTTCAGGGGTGAGTGCAGAAAAGGACGCCAAGAAC
TTCAGGGGCTTCACGGCGCTCCACGCTGCCGCCGCGTCCAACAAGGTAGA
GGCCATCTCGCTGCTGCTCGCTGCTGGAGCGGGGATCGACATTCCCGCCG
GCCTTCAGGGGTGA
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