mRNA_H-canaliculatus_F_contig14345.3400.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig14345.3400.1 vs. uniprot
Match: D7G2V4_ECTSI (Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2V4_ECTSI) HSP 1 Score: 296 bits (759), Expect = 9.690e-95 Identity = 161/261 (61.69%), Postives = 182/261 (69.73%), Query Frame = 1
Query: 1 KCVDLPFAKEKEEVFYDLPLDIKGSGTLRNSLDRFVEAELMSGENRWRAGEHGLQEARKGVRFVELPPVLQFHLKRFEYDPYQDDLAKIHDRFEFPTELDMSPWLRKE--MQRHDSEDATDGSTDASGIRGDCQAGQSAASYQLSAVVMHVGGPAAGHYYAYVRY------DKPAEXXXXXXXXXRPTLSSQSSLSTSWPKSSKPPRATPSSTAAWAKLDDHRVTKVSEAEVLRDAFGGGGGVYNGPGAELQGFFGQVRLS 759
+CVD+ F KEKEE FYDLP+DIKGSGTL+ SLDRF+EAEL+SG+NR RAGEHGLQ+ARKG+RF++LPPVLQFHLKRFEYDPYQ DL KIHDRFEFPTELDMSPW+ + S +D TDA A Y+LSAVVMHVGGPAAGHYYAYVRY +P+E P ++ + + K PP T W KLDDHRVTKV E EVLRDA GGGGGVY GPGAELQGFFGQV S
Sbjct: 230 ECVDVAFTKEKEEAFYDLPMDIKGSGTLQKSLDRFIEAELLSGDNRLRAGEHGLQDARKGIRFLQLPPVLQFHLKRFEYDPYQGDLVKIHDRFEFPTELDMSPWVTPPPLSPKDGSNSHSDSHTDAE---------DKADKYKLSAVVMHVGGPAAGHYYAYVRYREPPSPHQPSEDNAGGSGSGVPEAAATAGVVAD--KRGAPPSTT------WVKLDDHRVTKVFEGEVLRDALGGGGGVYRGPGAELQGFFGQVAGS 473
BLAST of mRNA_H-canaliculatus_F_contig14345.3400.1 vs. uniprot
Match: A0A835YMK6_9STRA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMK6_9STRA) HSP 1 Score: 153 bits (387), Expect = 1.680e-39 Identity = 73/161 (45.34%), Postives = 103/161 (63.98%), Query Frame = 1
Query: 4 CVDLPFAKEKEEVFYDLPLDIKGSGTLRNSLDRFVEAELMSGENRWRAGEHGLQEARKGVRFVELPPVLQFHLKRFEYDPYQDDLAKIHDRFEFPTELDMSPWLRKEMQRHDSEDATDGSTDASGIRGDCQAGQSAASYQLSAVVMHVGGPAAGHYYAYVR 486
C+++PF++ + E FYDL ++++G L+ SLD+F E ++G+NRWR HGLQ+ARKGVRF+ PP +QFHLKRF YD D+ K++ RFEFP LD+SPW+ + S A + +Y LSAV+MHVGG ++GHYYAY+R
Sbjct: 339 CINVPFSRNRPEPFYDLSVEVEGLRNLKESLDQFTTPEELTGDNRWRTEPHGLQDARKGVRFISFPPFIQFHLKRFRYDMNTGDMGKVNSRFEFPETLDVSPWVSEPGGEACSNPAA-----------------APLNYSLSAVLMHVGGVSSGHYYAYIR 482
BLAST of mRNA_H-canaliculatus_F_contig14345.3400.1 vs. uniprot
Match: UPI001CB92AF2 (ubiquitin C-terminal hydrolase 12-like isoform X1 n=2 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB92AF2) HSP 1 Score: 134 bits (337), Expect = 5.450e-32 Identity = 73/162 (45.06%), Postives = 101/162 (62.35%), Query Frame = 1
Query: 1 KCVDLPFAKEKEEVFYDLPLDIKGSGTLRNSLDRFVEAELMSGENRWRAGEHGLQEARKGVRFVELPPVLQFHLKRFEYDPYQDDLAKIHDRFEFPTELDMSPWLRKEMQRHDSEDATDGSTDASGIRGDCQAGQSAASYQLSAVVMHVGGPAAGHYYAYVR 486
+C+++ F ++E FYDL LD+KG + S D++VE E + G+N++ A EHGLQ+ARKGV F++ PPVLQ LKRFEYD +D + KI+DR+EFP ELD L +E ++ S DA IR Y L +V++H GG GHYYAY+R
Sbjct: 330 ECINVDFKSTRKESFYDLQLDVKGCKDVYASFDKYVEVERLEGDNKYHAEEHGLQDARKGVLFIDFPPVLQLQLKRFEYDFTRDTMVKINDRYEFPLELD----LDREGGKYLSPDAD------KSIRN---------LYTLHSVLVHSGGVHGGHYYAYIR 472
BLAST of mRNA_H-canaliculatus_F_contig14345.3400.1 vs. uniprot
Match: A0A835R3M1_VANPL (Ubiquitinyl hydrolase 1 n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835R3M1_VANPL) HSP 1 Score: 134 bits (336), Expect = 7.390e-32 Identity = 68/162 (41.98%), Postives = 101/162 (62.35%), Query Frame = 1
Query: 1 KCVDLPFAKEKEEVFYDLPLDIKGSGTLRNSLDRFVEAELMSGENRWRAGEHGLQEARKGVRFVELPPVLQFHLKRFEYDPYQDDLAKIHDRFEFPTELDMSPWLRKEMQRHDSEDATDGSTDASGIRGDCQAGQSAASYQLSAVVMHVGGPAAGHYYAYVR 486
+C+++ + ++E FYDL LD+KG + S D++VE E + G+N++ A ++GLQ+A+KGV F++ PPVLQ HLKRFEYD QD + KI+DR+EFP +LD L K+ ++ S DA + Y L +V++H GG GHYYAY+R
Sbjct: 319 ECINVEYTSSRKESFYDLQLDVKGCNDVYASFDKYVEVEQLDGDNKYHAEQYGLQDAKKGVLFIDFPPVLQLHLKRFEYDFMQDSMVKINDRYEFPLQLD----LDKDNGKYLSPDADRSVRNL---------------YTLHSVLVHSGGVHGGHYYAYIR 461
BLAST of mRNA_H-canaliculatus_F_contig14345.3400.1 vs. uniprot
Match: A0A059A217_EUCGR (Ubiquitinyl hydrolase 1 n=16 Tax=Magnoliopsida TaxID=3398 RepID=A0A059A217_EUCGR) HSP 1 Score: 134 bits (336), Expect = 7.520e-32 Identity = 68/162 (41.98%), Postives = 102/162 (62.96%), Query Frame = 1
Query: 1 KCVDLPFAKEKEEVFYDLPLDIKGSGTLRNSLDRFVEAELMSGENRWRAGEHGLQEARKGVRFVELPPVLQFHLKRFEYDPYQDDLAKIHDRFEFPTELDMSPWLRKEMQRHDSEDATDGSTDASGIRGDCQAGQSAASYQLSAVVMHVGGPAAGHYYAYVR 486
+C+D+ + ++E FYDL LD+KG + S D++VE E + G+N+++A EHGLQ+A+KGV F++ PPVLQ HLKRFEYD +D + KI+DR+EFP +LD L ++ ++ S DA + Y L +V++H GG GHYYA++R
Sbjct: 423 ECIDVDYKSTRKESFYDLQLDVKGCRDVYASFDKYVEVERLEGDNKYQAEEHGLQDAKKGVLFIDFPPVLQLHLKRFEYDFIRDTMVKINDRYEFPLQLD----LDRDNGKYLSPDADRSVRNL---------------YSLHSVLVHSGGVHGGHYYAFIR 565
BLAST of mRNA_H-canaliculatus_F_contig14345.3400.1 vs. uniprot
Match: A0A446U041_TRITD (USP domain-containing protein n=2 Tax=Triticum turgidum subsp. durum TaxID=4567 RepID=A0A446U041_TRITD) HSP 1 Score: 128 bits (322), Expect = 7.780e-32 Identity = 70/162 (43.21%), Postives = 104/162 (64.20%), Query Frame = 1
Query: 1 KCVDLPFAKEKEEVFYDLPLDIKGSGTLRNSLDRFVEAELMSGENRWRAGEHGLQEARKGVRFVELPPVLQFHLKRFEYDPYQDDLAKIHDRFEFPTELDMSPWLRKEMQRHDSEDATDGSTDASGIRGDCQAGQSAASYQLSAVVMHVGGPAAGHYYAYVR 486
+C+++ + ++E FYDL LD+KG + S D++VE E + G+N+++A +HGLQ+ARKGV F++ PPVLQ LKRFEYD +D + KI+DR+EFP +LD L K+ ++ + DA D S IR Y L +V++H GG GHYYA++R
Sbjct: 136 ECINVDYKSNRKESFYDLQLDVKGCRDVYASFDKYVEVERLEGDNKYQAEQHGLQDARKGVLFLDFPPVLQLQLKRFEYDYMRDTMVKINDRYEFPLQLD----LDKDDGKYLTPDA-----DRS-IRN---------LYTLHSVLVHSGGVHGGHYYAFIR 278
BLAST of mRNA_H-canaliculatus_F_contig14345.3400.1 vs. uniprot
Match: A0A1J6KC76_NICAT (Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Nicotiana attenuata TaxID=49451 RepID=A0A1J6KC76_NICAT) HSP 1 Score: 131 bits (330), Expect = 1.190e-31 Identity = 69/162 (42.59%), Postives = 100/162 (61.73%), Query Frame = 1
Query: 1 KCVDLPFAKEKEEVFYDLPLDIKGSGTLRNSLDRFVEAELMSGENRWRAGEHGLQEARKGVRFVELPPVLQFHLKRFEYDPYQDDLAKIHDRFEFPTELDMSPWLRKEMQRHDSEDATDGSTDASGIRGDCQAGQSAASYQLSAVVMHVGGPAAGHYYAYVR 486
+C+++ F ++E FYDL LD+KG + S D++VE E + G+N++ A EHGLQ+A+KGV F++ PPVLQ LKRFEYD +D + KI+DR+EFP ELD L +E ++ S DA + Y L +V++H GG GHYYA++R
Sbjct: 193 ECINVDFKSTRKESFYDLQLDVKGCRDVYASFDKYVEVERLEGDNKYHAEEHGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPLELD----LDRENGKYLSPDADRSVRNL---------------YTLHSVLVHSGGVHGGHYYAFIR 335
BLAST of mRNA_H-canaliculatus_F_contig14345.3400.1 vs. uniprot
Match: A0A7S0KL47_9CHLO (Ubiquitinyl hydrolase 1 n=2 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S0KL47_9CHLO) HSP 1 Score: 132 bits (333), Expect = 1.870e-31 Identity = 71/164 (43.29%), Postives = 101/164 (61.59%), Query Frame = 1
Query: 1 KCVDLPFAKEKEEVFYDLPLDIKGSGTLRNSLDRFVEAELMSGENRWRAGEHGLQEARKGVRFVELPPVLQFHLKRFEYDPYQDDLAKIHDRFEFPTELDMSPWLRKEMQRHDSEDATDGSTDASGIRGDCQAGQSAASYQLSAVVMHVGGPAAGHYYAYVRYD 492
+C+++ + E++E F DL LD+KG + S DR+ E E + G+N++RA HGLQ+ARKGV F + PPVLQ LKRFEYD ++D + KIHDR+EFP ELD+ RK + DAS +R Y+L +V++H GG GHYYA+++ D
Sbjct: 352 ECINVDYKSERKEEFLDLQLDVKGCKDIYASFDRYTEIEKLDGDNKYRAEGHGLQDARKGVLFHDFPPVLQIQLKRFEYDFHRDTMVKIHDRYEFPEELDLDVGDRKYLVPE---------ADAS-VRN---------KYRLHSVLVHSGGINGGHYYAFIKPD 496
BLAST of mRNA_H-canaliculatus_F_contig14345.3400.1 vs. uniprot
Match: A0A7J9IQJ5_9ROSI (Ubiquitin carboxyl-terminal hydrolase (Fragment) n=1 Tax=Gossypium armourianum TaxID=34283 RepID=A0A7J9IQJ5_9ROSI) HSP 1 Score: 132 bits (332), Expect = 2.220e-31 Identity = 67/162 (41.36%), Postives = 99/162 (61.11%), Query Frame = 1
Query: 1 KCVDLPFAKEKEEVFYDLPLDIKGSGTLRNSLDRFVEAELMSGENRWRAGEHGLQEARKGVRFVELPPVLQFHLKRFEYDPYQDDLAKIHDRFEFPTELDMSPWLRKEMQRHDSEDATDGSTDASGIRGDCQAGQSAASYQLSAVVMHVGGPAAGHYYAYVR 486
+C+++ + ++E FYDL LD+KG + S D++VE E + G+N++ A EHGLQ+A+KGV F+E PPVLQ LKRFEYD +D + KI+DR+EFP +LD+ RK + + D T + Y L +V++H GG GHYYA++R
Sbjct: 301 ECINVDYKSTRKESFYDLQLDVKGCRDVYASFDKYVEVERLEGDNKYHAEEHGLQDAKKGVLFIEFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPLQLDLDREDRKYL-------SPDADTSVRNL------------YTLHSVLVHSGGVHGGHYYAFIR 443
BLAST of mRNA_H-canaliculatus_F_contig14345.3400.1 vs. uniprot
Match: A0A7J9KQQ1_GOSSC (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Gossypium schwendimanii TaxID=34291 RepID=A0A7J9KQQ1_GOSSC) HSP 1 Score: 132 bits (332), Expect = 2.310e-31 Identity = 67/162 (41.36%), Postives = 99/162 (61.11%), Query Frame = 1
Query: 1 KCVDLPFAKEKEEVFYDLPLDIKGSGTLRNSLDRFVEAELMSGENRWRAGEHGLQEARKGVRFVELPPVLQFHLKRFEYDPYQDDLAKIHDRFEFPTELDMSPWLRKEMQRHDSEDATDGSTDASGIRGDCQAGQSAASYQLSAVVMHVGGPAAGHYYAYVR 486
+C+++ + ++E FYDL LD+KG + S D++VE E + G+N++ A EHGLQ+A+KGV F+E PPVLQ LKRFEYD +D + KI+DR+EFP +LD+ RK + + D T + Y L +V++H GG GHYYA++R
Sbjct: 277 ECINVDYKSTRKESFYDLQLDVKGCRDVYASFDKYVEVERLEGDNKYHAEEHGLQDAKKGVLFIEFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPLQLDLDREDRKYL-------SPDADTSVRNL------------YTLHSVLVHSGGVHGGHYYAFIR 419 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14345.3400.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig14345.3400.1 >prot_H-canaliculatus_F_contig14345.3400.1 ID=prot_H-canaliculatus_F_contig14345.3400.1|Name=mRNA_H-canaliculatus_F_contig14345.3400.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=260bp KCVDLPFAKEKEEVFYDLPLDIKGSGTLRNSLDRFVEAELMSGENRWRAGback to top mRNA from alignment at H-canaliculatus_F_contig14345:18..2290+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig14345.3400.1 ID=mRNA_H-canaliculatus_F_contig14345.3400.1|Name=mRNA_H-canaliculatus_F_contig14345.3400.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2273bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14345:18..2290+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14345:18..2290+ >mRNA_H-canaliculatus_F_contig14345.3400.1 ID=mRNA_H-canaliculatus_F_contig14345.3400.1|Name=mRNA_H-canaliculatus_F_contig14345.3400.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1560bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14345:18..2290+ (Hapterophycus canaliculatus Oshoro5f female)back to top |