mRNA_H-canaliculatus_F_contig14306.3374.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14306.3374.1
Unique NamemRNA_H-canaliculatus_F_contig14306.3374.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig14306.3374.1 vs. uniprot
Match: D8LQZ6_ECTSI (Casein kinase (Serine/threonine/tyrosine protein kinase) (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQZ6_ECTSI)

HSP 1 Score: 199 bits (506), Expect = 9.240e-61
Identity = 97/115 (84.35%), Postives = 99/115 (86.09%), Query Frame = 1
Query:    1 LQWENQVVEDLQSLSCVPRHYLFGKHGNKDVLVMELLSGEDMSALR-------------RRPGGLPLGVCCDLALQMLECLKGVHGCGYLHRDVKPANFVRRKKNAKEFVIIDFG 306
            L+WENQVVE LQSLSCVPRHYLFGKHGNKDVLVMELLSGEDMSALR             +RPGGLPLGVCCDLALQMLECLKGVH CGYLHRDVKPANFVRRKKN KEFVIIDFG
Sbjct:   98 LKWENQVVEGLQSLSCVPRHYLFGKHGNKDVLVMELLSGEDMSALRHRQPKAIPGSLASQRPGGLPLGVCCDLALQMLECLKGVHSCGYLHRDVKPANFVRRKKNGKEFVIIDFG 212          
BLAST of mRNA_H-canaliculatus_F_contig14306.3374.1 vs. uniprot
Match: A0A6H5L231_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L231_9PHAE)

HSP 1 Score: 202 bits (513), Expect = 9.500e-60
Identity = 98/115 (85.22%), Postives = 100/115 (86.96%), Query Frame = 1
Query:    1 LQWENQVVEDLQSLSCVPRHYLFGKHGNKDVLVMELLSGEDMSALR-------------RRPGGLPLGVCCDLALQMLECLKGVHGCGYLHRDVKPANFVRRKKNAKEFVIIDFG 306
            L+WENQVVEDLQSLSCVPRHYLFGKHGNKDVLVMELLSGEDMSALR             +RPGGLPLGVCCDLALQMLECLKGVH CGYLHRDVKPANFVRRKKN KEFVIIDFG
Sbjct:   53 LKWENQVVEDLQSLSCVPRHYLFGKHGNKDVLVMELLSGEDMSALRHRQPKAIPGSLASQRPGGLPLGVCCDLALQMLECLKGVHSCGYLHRDVKPANFVRRKKNGKEFVIIDFG 167          
BLAST of mRNA_H-canaliculatus_F_contig14306.3374.1 vs. uniprot
Match: A0A7S2Y1F0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1F0_9STRA)

HSP 1 Score: 113 bits (283), Expect = 2.200e-28
Identity = 57/108 (52.78%), Postives = 73/108 (67.59%), Query Frame = 1
Query:    1 LQWENQVVEDLQSLSCVPRHYLFG----KHGNKDVLVMELLSGEDMSALRRRPGGL--PLGVCCDLALQMLECLKGVHGCGYLHRDVKPANFVRRKKNAKEFVIIDFG 306
            L+WEN+V+  LQS   VPRH+ FG      G + VLVM++L G+DMSALR R   L  PL VC  L  QML+CLK +H  G++HRDVKP+NF+R    ++ F IIDFG
Sbjct:   16 LKWENEVLLALQSSPHVPRHHWFGVVNFSKGARPVLVMQMLGGKDMSALRHRQPSLRMPLQVCLQLTYQMLDCLKSLHALGFVHRDVKPSNFIRDSPTSRRFYIIDFG 123          
BLAST of mRNA_H-canaliculatus_F_contig14306.3374.1 vs. uniprot
Match: A0A835YU46_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU46_9STRA)

HSP 1 Score: 115 bits (289), Expect = 2.610e-28
Identity = 57/105 (54.29%), Postives = 74/105 (70.48%), Query Frame = 1
Query:    7 WENQVVEDLQSLSCVPRHYLFGKHGNKDVLVMELLSGEDMSALRRR----PGG-LPLGVCCDLALQMLECLKGVHGCGYLHRDVKPANFVRRKKNAKEFVIIDFG 306
            WE+ V+ +LQSL  V R+     HG+K+VLVMELL G D+ ALR R    PG  +P+  C DLA +ML CL+G+HG GYLHRDVKP+NFVRR +  K+  ++DFG
Sbjct:   77 WESYVLRELQSLPFVARYVGQHTHGDKEVLVMELLHGGDVRALRMRQNCPPGTPMPISACIDLAQEMLRCLEGLHGAGYLHRDVKPSNFVRRNRGDKQLCLVDFG 181          
BLAST of mRNA_H-canaliculatus_F_contig14306.3374.1 vs. uniprot
Match: A0A482URH2_9ARCH (Protein kinase domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482URH2_9ARCH)

HSP 1 Score: 89.7 bits (221), Expect = 1.210e-19
Identity = 42/108 (38.89%), Postives = 68/108 (62.96%), Query Frame = 1
Query:    1 LQWENQVVEDLQSLSCVPRHYLFGKHGNKDVLVMELLSGEDMSALRRR------PGGLPLGVCCDLALQMLECLKGVHGCGYLHRDVKPANFVRRKKNAKEFVIIDFG 306
            L+WE  V++ L     VP+  + G++  +D +VM+L++GEDM+ +R R       G +PL +   L  QML C++ +H  GY+HRDVKP+NF+++     +F +IDFG
Sbjct:   15 LRWEGNVMQALAHTPHVPQFIMSGQYEKRDFIVMDLMNGEDMAHIRNRIRSASKTGLVPLPIVVYLCKQMLTCIEALHTHGYVHRDVKPSNFMQKTAEDTKFCVIDFG 122          
BLAST of mRNA_H-canaliculatus_F_contig14306.3374.1 vs. uniprot
Match: A0A485L9B7_9STRA (Aste57867_18055 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L9B7_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 1.810e-19
Identity = 51/110 (46.36%), Postives = 74/110 (67.27%), Query Frame = 1
Query:    1 LQWENQVVEDLQSLSC--VPRHYLFGKHGNKDVLVMELLSGEDMSALRRRP---GGLPLGVCCDLALQMLECLKGVHGCGYLHRDVKPANF-VRRKKNAKEFVIIDFGES 312
            L+WE+QV+ +LQ   C  V ++   GKHG+  +LVMELL G++MS +R +P    G+PL      A+QML+CL+  HG GY+HRD+K +NF +   K+ K++ IIDFG S
Sbjct:   58 LEWESQVLIELQK-KCPYVCKYIHHGKHGDNVILVMELL-GDNMSKMRSQPDAANGVPLTKSISAAIQMLDCLETFHGAGYIHRDIKASNFALNNGKDNKKYYIIDFGLS 165          
BLAST of mRNA_H-canaliculatus_F_contig14306.3374.1 vs. uniprot
Match: A0A7S1CG14_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CG14_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 2.720e-14
Identity = 47/109 (43.12%), Postives = 67/109 (61.47%), Query Frame = 1
Query:    1 LQWENQVVEDLQSLSCVPRHYLFGK-HGNKDVLVMELLSGEDMSALRR-RPGG-LPLGVCCDLALQMLECLKGVHGCGYLHRDVKPANFVRRKKNAK--EFVIIDFGES 312
            L+WE++++  +Q    VPRH  +    G + VLVM+ L G+++S LR  +PGG  P      L LQ+L CL+G+H  GY+HRDVKP+NFV     A   +  I+DFG S
Sbjct:   27 LRWESEILSKMQVFPFVPRHARYATLSGRRRVLVMQRL-GKNLSELRHAQPGGKFPPRTALALGLQLLTCLEGLHQMGYVHRDVKPSNFVVGLGPAGRGQLHILDFGLS 134          
BLAST of mRNA_H-canaliculatus_F_contig14306.3374.1 vs. uniprot
Match: A0A6B2L871_9EUKA (Protein kinase domain-containing protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L871_9EUKA)

HSP 1 Score: 75.5 bits (184), Expect = 5.190e-14
Identity = 44/105 (41.90%), Postives = 61/105 (58.10%), Query Frame = 1
Query:   10 ENQVVEDLQSLSCVPRHYLFGKHGNK-DVLVMELLSGEDMSALRRRPGGLPLGVCCDLAL--QMLECLKGVHGCGYLHRDVKPANFV---RRKKNAKEFVIIDFG 306
            E  ++  L+    VP+    G+H +K + +VM+LL GE++SALRRR       +   L L  QML  +K VH  GYLHRD+KP NFV    R  N +  ++IDFG
Sbjct:    3 EENILRSLKGCKYVPKILNSGRHEDKVNFIVMDLL-GENLSALRRRATNQTFSLLTTLMLGMQMLRAIKEVHDAGYLHRDIKPGNFVLGTERTNNPRTVILIDFG 106          
BLAST of mRNA_H-canaliculatus_F_contig14306.3374.1 vs. uniprot
Match: A0A0V1AZC6_TRISP (Tau-tubulin kinase 1 n=4 Tax=Trichinella spiralis TaxID=6334 RepID=A0A0V1AZC6_TRISP)

HSP 1 Score: 71.2 bits (173), Expect = 2.200e-12
Identity = 39/104 (37.50%), Postives = 58/104 (55.77%), Query Frame = 1
Query:    1 LQWENQVVEDLQSLSCVPRHYLFGKHGNKDVLVMELLSGEDMSALRRRPGG-LPLGVCCDLALQMLECLKGVHGCGYLHRDVKPANFV-RRKKNAKEFVIIDFG 306
            +Q E ++++++Q  S V ++   G   N + L+ME+     ++ L+R PG   PL V  +     +E L+ VH  GYLHRDVKP NFV +   N     IIDFG
Sbjct:   85 VQKEAEILKNMQGNSHVLQYLGSGDENNYNYLLMEVAGESVLNLLQRAPGNKFPLPVAAEFGYNFVEALEEVHNAGYLHRDVKPGNFVLKNAANLPRICIIDFG 188          
BLAST of mRNA_H-canaliculatus_F_contig14306.3374.1 vs. uniprot
Match: A0A6N7PUX9_9DELT (Non-specific serine/threonine protein kinase n=1 Tax=Polyangium spumosum TaxID=889282 RepID=A0A6N7PUX9_9DELT)

HSP 1 Score: 70.1 bits (170), Expect = 7.520e-12
Identity = 36/73 (49.32%), Postives = 47/73 (64.38%), Query Frame = 1
Query:   94 LVMELLSGEDMSALRRRPGGLPLGVCCDLALQMLECLKGVHGCGYLHRDVKPAN-FVRRKKNAKEFV-IIDFG 306
            LVMELL GED+ A+ R  G LP+   C++ LQ  E L   HG G +HRD+KPAN FV R+ +    V ++DFG
Sbjct:   97 LVMELLEGEDLDAMIRAAGKLPIEEACEIVLQTCEALAEAHGRGIVHRDIKPANLFVTRRADGSPAVKVLDFG 169          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14306.3374.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQZ6_ECTSI9.240e-6184.35Casein kinase (Serine/threonine/tyrosine protein k... [more]
A0A6H5L231_9PHAE9.500e-6085.22Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A7S2Y1F0_9STRA2.200e-2852.78Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A835YU46_9STRA2.610e-2854.29Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A482URH2_9ARCH1.210e-1938.89Protein kinase domain-containing protein (Fragment... [more]
A0A485L9B7_9STRA1.810e-1946.36Aste57867_18055 protein n=1 Tax=Aphanomyces stella... [more]
A0A7S1CG14_9STRA2.720e-1443.12Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A6B2L871_9EUKA5.190e-1441.90Protein kinase domain-containing protein n=1 Tax=A... [more]
A0A0V1AZC6_TRISP2.200e-1237.50Tau-tubulin kinase 1 n=4 Tax=Trichinella spiralis ... [more]
A0A6N7PUX9_9DELT7.520e-1249.32Non-specific serine/threonine protein kinase n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14306contigH-canaliculatus_F_contig14306:752..1800 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.4
Seed ortholog evalue1.3e-16
Seed eggNOG ortholog157072.XP_008879449.1
KEGG koko:K08815
EggNOG free text desc.protein kinase activity
EggNOG OGsKOG1164@1,KOG1164@2759
EC2.7.11.26
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01001
Hectar predicted targeting categoryother localisation
Exons3
Model size312
Cds size312
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14306.3374.1prot_H-canaliculatus_F_contig14306.3374.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14306 752..1800 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929179.6471114-CDS-H-canaliculatus_F_contig14306:751..8881622929179.6471114-CDS-H-canaliculatus_F_contig14306:751..888Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14306 752..888 +
1696845709.0030267-CDS-H-canaliculatus_F_contig14306:751..8881696845709.0030267-CDS-H-canaliculatus_F_contig14306:751..888Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14306 752..888 +
1622929179.6682816-CDS-H-canaliculatus_F_contig14306:1377..14291622929179.6682816-CDS-H-canaliculatus_F_contig14306:1377..1429Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14306 1378..1429 +
1696845709.0160434-CDS-H-canaliculatus_F_contig14306:1377..14291696845709.0160434-CDS-H-canaliculatus_F_contig14306:1377..1429Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14306 1378..1429 +
1622929179.7000766-CDS-H-canaliculatus_F_contig14306:1677..18001622929179.7000766-CDS-H-canaliculatus_F_contig14306:1677..1800Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14306 1678..1800 +
1696845709.0243683-CDS-H-canaliculatus_F_contig14306:1677..18001696845709.0243683-CDS-H-canaliculatus_F_contig14306:1677..1800Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14306 1678..1800 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14306.3374.1

>prot_H-canaliculatus_F_contig14306.3374.1 ID=prot_H-canaliculatus_F_contig14306.3374.1|Name=mRNA_H-canaliculatus_F_contig14306.3374.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=104bp
LQWENQVVEDLQSLSCVPRHYLFGKHGNKDVLVMELLSGEDMSALRRRPG
GLPLGVCCDLALQMLECLKGVHGCGYLHRDVKPANFVRRKKNAKEFVIID
FGES
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mRNA from alignment at H-canaliculatus_F_contig14306:752..1800+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14306.3374.1 ID=mRNA_H-canaliculatus_F_contig14306.3374.1|Name=mRNA_H-canaliculatus_F_contig14306.3374.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1049bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14306:752..1800+ (Hapterophycus canaliculatus Oshoro5f female)
TTGCAGTGGGAGAACCAGGTGGTGGAGGACCTGCAGAGCCTGTCCTGCGT GCCCCGGCACTATCTATTCGGCAAGCACGGGAATAAAGATGTTCTAGTCA TGGAGCTGCTCTCCGGGGAAGACATGAGCGCTCTCCGGTAGGGCGCTGTT CGTAGTGTTTGCTGTTGTCGTCGTTGTTGAAGTTGCTGTGGTCTTGCGCT GCCGCTGCTGCTGCTGGTTGTTGTGGTTGTTGTTATGGTTGCTGCTGCTA TTTTTGCTGATCCTGCGGTGCTGCTGCTGCTGCTGCTGCTGCCGCTAGTG TTTTGTCATGGCTGGTGTTGGCGTCGTAGCTTCGGATTTTCTCTTTCGGT GGTTTGTGAAGCAGCGCTTTCGACCCCGGGGCACCCCTCGGCTCCCACGC CCGTGCAAACGTGGACTCGGAGCGGTGATCCCACACGTGCCCTCCAGCGA GGGCACGCAGCAACGGTGGCAGCAGGGTGGCGTTTTTTCGTTTTCTAGCC TTCTTTCGCGGAGCGTAAGCGCCGCTTGTAACGTCCCATTACTGCCATTC TTCTCCGGGGGGGGTCCGCCGGATCGATGAACACCAGGCACCGACAGCCG AAGGCGATCCCTGGTTCTGCGGCCAGCCGGCGCCCGGGAGGATTGCCGCT GGGAGTGTGCTGTGACCTGGCCCTTCAGGTGGGGAACGGAGTCTTTCTGT GATGCAGGACATGAGAAATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTTTT CTCGCTCTTCTTGCGTCTTCCGTCGAAAAATTCGCCTTCCCAACCTCGCC TTGCCTTTCGCTTCTGTTTGTTTTTGTGTTTTTGTGTTTTTGTGTTTTTG TGTTTTTGTGTTTGTGCTCACGATAGATGCTTGAGTGCCTCAAGGGGGTG CACGGCTGCGGCTACCTGCACCGGGACGTCAAGCCGGCGAACTTCGTCCG CCGTAAGAAGAACGCAAAGGAGTTTGTCATCATTGACTTCGGTGAGTCA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14306:752..1800+

>mRNA_H-canaliculatus_F_contig14306.3374.1 ID=mRNA_H-canaliculatus_F_contig14306.3374.1|Name=mRNA_H-canaliculatus_F_contig14306.3374.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=624bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14306:752..1800+ (Hapterophycus canaliculatus Oshoro5f female)
TTGCAGTGGGAGAACCAGGTGGTGGAGGACCTGCAGAGCCTGTCCTGCGT
GCCCCGGCACTATCTATTCGGCAAGCACGGGAATAAAGATGTTCTAGTCA
TGGAGCTGCTCTCCGGGGAAGACATGAGCGCTCTCCGTTGCAGTGGGAGA
ACCAGGTGGTGGAGGACCTGCAGAGCCTGTCCTGCGTGCCCCGGCACTAT
CTATTCGGCAAGCACGGGAATAAAGATGTTCTAGTCATGGAGCTGCTCTC
CGGGGAAGACATGAGCGCTCTCCGCCGGCGCCCGGGAGGATTGCCGCTGG
GAGTGTGCTGTGACCTGGCCCTTCAGCCGGCGCCCGGGAGGATTGCCGCT
GGGAGTGTGCTGTGACCTGGCCCTTCAGATGCTTGAGTGCCTCAAGGGGG
TGCACGGCTGCGGCTACCTGCACCGGGACGTCAAGCCGGCGAACTTCGTC
CGCCGTAAGAAGAACGCAAAGGAGTTTGTCATCATTGACTTCGGTGAGTC
AATGCTTGAGTGCCTCAAGGGGGTGCACGGCTGCGGCTACCTGCACCGGG
ACGTCAAGCCGGCGAACTTCGTCCGCCGTAAGAAGAACGCAAAGGAGTTT
GTCATCATTGACTTCGGTGAGTCA
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