mRNA_H-canaliculatus_F_contig1423.3328.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1423.3328.1
Unique NamemRNA_H-canaliculatus_F_contig1423.3328.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1423.3328.1 vs. uniprot
Match: D8LCI8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCI8_ECTSI)

HSP 1 Score: 236 bits (603), Expect = 3.320e-71
Identity = 110/143 (76.92%), Postives = 121/143 (84.62%), Query Frame = 1 
Query:  253 GFTRGERNGTAGEDLGFASELDEGNEALAWPSDTFRGWWSEGTPEEEYEDSIFNLYTAKTLVTGVPYTAIIDRSSSLKSNCGHPMDFSAFYAWVDDETTSYKMFGKVDYDIETIQEIPMSCYVAPASLTFDPPLPRTKTHITI 681
            GFTRGERNGTAGED GFA+E DEGN    WPSDTFRGWWSEGTPEEEYEDS+F+LYT KTL   + YTAIIDR S LKS+CGHP D SAFYAWVDD TT YKMFG+VD+ IE  + IPMSCYVAPA+LTFDPPLP+T THIT+
Sbjct:   48 GFTRGERNGTAGEDFGFANEEDEGNFGFGWPSDTFRGWWSEGTPEEEYEDSVFSLYTTKTLDADISYTAIIDRMSGLKSSCGHPADHSAFYAWVDDTTTFYKMFGQVDWTIEETEAIPMSCYVAPATLTFDPPLPQTMTHITV 190
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1423.3328.1 vs. uniprot
Match: A0A6H5KP52_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP52_9PHAE)

HSP 1 Score: 217 bits (553), Expect = 7.150e-64
Identity = 101/133 (75.94%), Postives = 111/133 (83.46%), Query Frame = 1 
Query:  283 AGEDLGFASELDEGNEALAWPSDTFRGWWSEGTPEEEYEDSIFNLYTAKTLVTGVPYTAIIDRSSSLKSNCGHPMDFSAFYAWVDDETTSYKMFGKVDYDIETIQEIPMSCYVAPASLTFDPPLPRTKTHITI 681
            AGED GFA+E DEGN    WPSDTFRGWWSEGTPEEEYEDS+F+LYT KTL   V YTAIIDR S LKS+CGHP + SAFYAWVDD TT YKMFGKVD+ I   +EIPMSCYVAPA+LTFDPPLP+T THIT+
Sbjct:    2 AGEDFGFANEEDEGNFGFGWPSDTFRGWWSEGTPEEEYEDSVFSLYTTKTLDADVSYTAIIDRMSGLKSSCGHPANHSAFYAWVDDTTTFYKMFGKVDWTIRETEEIPMSCYVAPATLTFDPPLPQTMTHITV 134
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1423.3328.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LCI8_ECTSI3.320e-7176.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KP52_9PHAE7.150e-6475.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1423contigH-canaliculatus_F_contig1423:11897..17030 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score239.2
Seed ortholog evalue1.9e-60
Seed eggNOG ortholog2880.D8LCI8
EggNOG free text desc.regulation of canonical Wnt signaling pathway involved in osteoblast differentiation
EggNOG OGsKOG1225@1,KOG1225@2759
Ec32 ortholog descriptionEGF-like domain, extracellular
Ec32 orthologEc-03_002750.1
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons5
Model size685
Cds size684
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1423.3328.1prot_H-canaliculatus_F_contig1423.3328.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1423 11897..17030 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929172.8217938-CDS-H-canaliculatus_F_contig1423:11896..121461622929172.8217938-CDS-H-canaliculatus_F_contig1423:11896..12146Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1423 11897..12146 +
1696845705.7312732-CDS-H-canaliculatus_F_contig1423:11896..121461696845705.7312732-CDS-H-canaliculatus_F_contig1423:11896..12146Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1423 11897..12146 +
1622929172.8339508-CDS-H-canaliculatus_F_contig1423:15102..152051622929172.8339508-CDS-H-canaliculatus_F_contig1423:15102..15205Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1423 15103..15205 +
1696845705.744098-CDS-H-canaliculatus_F_contig1423:15102..152051696845705.744098-CDS-H-canaliculatus_F_contig1423:15102..15205Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1423 15103..15205 +
1622929172.843364-CDS-H-canaliculatus_F_contig1423:15662..158131622929172.843364-CDS-H-canaliculatus_F_contig1423:15662..15813Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1423 15663..15813 +
1696845705.7543747-CDS-H-canaliculatus_F_contig1423:15662..158131696845705.7543747-CDS-H-canaliculatus_F_contig1423:15662..15813Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1423 15663..15813 +
1622929172.8538907-CDS-H-canaliculatus_F_contig1423:16462..165961622929172.8538907-CDS-H-canaliculatus_F_contig1423:16462..16596Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1423 16463..16596 +
1696845705.7645435-CDS-H-canaliculatus_F_contig1423:16462..165961696845705.7645435-CDS-H-canaliculatus_F_contig1423:16462..16596Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1423 16463..16596 +
1622929172.864033-CDS-H-canaliculatus_F_contig1423:16984..170301622929172.864033-CDS-H-canaliculatus_F_contig1423:16984..17030Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1423 16985..17030 +
1696845705.774405-CDS-H-canaliculatus_F_contig1423:16984..170301696845705.774405-CDS-H-canaliculatus_F_contig1423:16984..17030Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1423 16985..17030 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1423.3328.1

>prot_H-canaliculatus_F_contig1423.3328.1 ID=prot_H-canaliculatus_F_contig1423.3328.1|Name=mRNA_H-canaliculatus_F_contig1423.3328.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=228bp
IAESGQGGSFVPRLLLFSSLRRQTRRREKPSLRSDCQDLIQRLSSPSPST
SPSSATALIPTAERQSTKSRIRSCLRSSKFRRGTGFTRGERNGTAGEDLG
FASELDEGNEALAWPSDTFRGWWSEGTPEEEYEDSIFNLYTAKTLVTGVP
YTAIIDRSSSLKSNCGHPMDFSAFYAWVDDETTSYKMFGKVDYDIETIQE
IPMSCYVAPASLTFDPPLPRTKTHITIA
back to top

mRNA from alignment at H-canaliculatus_F_contig1423:11897..17030+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1423.3328.1 ID=mRNA_H-canaliculatus_F_contig1423.3328.1|Name=mRNA_H-canaliculatus_F_contig1423.3328.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=5134bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1423:11897..17030+ (Hapterophycus canaliculatus Oshoro5f female)
ATAGCTGAGAGCGGCCAAGGGGGAAGCTTTGTGCCTCGTCTACTTCTTTT
CAGCTCTTTAAGACGGCAAACGCGGCGACGAGAAAAACCCTCTCTACGTT
CCGATTGTCAGGACCTAATACAGCGCTTATCGTCACCATCACCTTCGACA
TCTCCATCATCCGCAACGGCATTGATACCAACTGCGGAAAGACAAAGTAC
GAAGAGCAGAATTCGATCTTGTCTAAGGTCGTCAAAATTTCGGAGAGGAA
CACTGCGGGGGAAAGCAGCCATGGCGGTGACGCTGGCGTGCTGTGCATCG
TTTGAACCTGCGCAAGGTGAGAGAGATGTGGAGTATACTCTGCTTTGTGG
TACACTGGTTCTATGTGAAGGATTGAGGCAACAAGAAGTTGTCCTTCGCC
GCTTTATATACAACTTGAGGCACATTGATCTACAGTTGTGGCATTGTAGG
ATTCTCCTGTCTAAATCTGTTTCGCACACCAGAGGACCAACCCCGGCAGG
AAATCATGCACCAGTCTCGCCTTCGGCACCAATCCAAAGTCATCGCTCCA
GCATTTTGTCCAGTATCGGATGCCACGCCTGATGGATGGAACATGTGTCT
ATCTCTAGCGTGAAGGGTAAGAGGACTGCGGCCGCTGTGGCCGCAATGTG
GGATAGTTGAATCTCGCCCTGCGTTGGCTGTCGACCCTCCTTCACAGCCC
ATTCTTCGTGCACACGTTTTCGGTTCCCGCTCTCGATGTTCGTTTCAAAC
GGTTTCTGAGCGAAACGCGGTCAACTATACAACAAATCCCACGCTCATCT
TCTCGCTCTGGGCAGTACTTGCTTGTTTCGGTTACGCCATTGACATGCAT
GCGTTGGGGGCGGGCAGCACCAAGTGCAATACCAAGTACGATACCAGATA
CCTGGTCTGAGGTGAACTCATTCACATGCTGCATATCTCATCACAGGATG
CTTCAAGCACCTAGATGAACGCATGACCTTTATTATGGTTATGTCACCCG
TTACATAAAATTGTTGAGAGCATTCCGATGCGTACATCCCGCCAATCGAC
ATTTTATACACAGTTCGCCGAATATGCACTGCGCTGAGCTGGCCAGCTTT
TTCTTTTCATGTTTTTCTCCGAACAACACACACTAAACCCTCATCATTTG
GAACTCAACGGAGACCTCGAGATACGTCTCGCACGACGTGTACCTCAGGA
GGTGTTCCTACGGTGTTGTTCTGTCTTTCTACAAGCCTCCCCCTTATCGC
CGGGGCCTTCGTCTTCGGCAGGGCACACACAGAGCGCCAACTCGGAGTTT
TGCCGATCGTCTTTTCTTTTTTCCCCTTGGCCCAACCTACGCAGCGGCGA
AGCTGACCGTATGACGAGGCGGAGAGAAATGCATCGTAAAGCTCTCGTTG
TCCAACAATTGTACGCACCATGATCTACGCCCGCAACACCACTCAGAAGG
GTTGAGAAACGTTGAGACGGATAAAATCCTTCGGGTTGAGCGCTGGTCGC
TGGATTGTCACAGTAAATGGAAGACGATTTCCTCTTTTCCTTGTGCTACT
TTGAGGCATTTGTCTGAAGTGAAAATATTTGCGGTATTTGCCTCATCACT
GTTCCTGCGCAACTGCACCACGATGACGTTTAACACATTGAAAGCAAAGT
CACGTTGATTTTATGTATAGCCATCGCTGAACGTGACTTCAACCCCAAAG
CATCTTGACACTTTCTGGCTTAACGCGACGAGAACGAAACCAAACGAGTT
GGTGCCAAACTTCTGCTTTATCTGTGAAGATGCCTCAGCTATTGTTTTTG
TTTGCAATCCCACCGCCCTCTCCCGCTGCTGACACAATGCCAGTCTCGGC
ACTATACGATACCAAGCTGTCGTTCGATCCTCCGGAGGTCGGCTATCCGA
CGGAGATAGCGTTCTCCTTCACGCCTAGCTTCGGCATCTCCGCGGGGTGA
GGCAGGGGAAGTAGATGTTGTGGAGTATGCCATACGGAGCACTGGGCGGG
ACACGAAACATGCTTTGAGGATCATGTACGGCAGCGAGATAGGAGGAACG
CATGTATGCGATACGTATGGGCGGGGAAGGACAGGTGTCACGCATTGGGA
TTTGCTAAGAGGTACGCTAGCGACCAGAGAGCGCGTGAGACTCCGAGGAG
CACAATGTGCTTCCGTGAAAGGTAGAGATCAAGAGATATTTCGCCATGTA
AACCATGTCAGAAACCAGACAAGGACACCACGGAACGGCCTCGGCGCCTC
AAGCAGTTTGGTATGCGACACGAGGGAAGACGGGGGCGGGGGCAACAACT
CCTGATATTCACACGGCCCTCTTGAACCCGACGCCGTCTTTCCGAATTCA
ATAATTCAAAATTCGATACAACTGGAGCCTTCCTTCTTCTCGAGAGAACC
CTTTCGGAATTTCCCCGAAAATACGAAGTCGCCTACACCAAAACATGTGG
ACTCGTATACGTCCGAGTTTTGGGAACCAAACAAAGGGAAGCGGCGGAAC
TCCGAAGTTTGGGAGCTTGACACTTCCAAAACTTTGATATTTTTTAGGCA
AAAAACAAAAGATAGCCTGCTAATCATGGCCCCAGGGCAGAGGCTCGTAG
TGTACATGATGAAGACGCTCTTTGTTGCCAAGGCGGCAGAGCAGGTGTAC
GTTACTTGTTTGGCAGTCTACCATAGGTCGCACGTTGGGCTGTCTTCTCC
GACGCGGAGCACCGTTCGAACTTCTGAGAAGAATATACGAACCATTTTCT
GGGGGCGGAGGCTCAACAACGGCGGGTGTTAACATTGAACCCGCGTTGCT
CGCGTCGAACTCGAGACAGCACAACGCTCTTGGCTGCGACGACGTCTCTT
CAATACGATTGCCGTGGTAGGACGCCGTGTTTTCATGTTCACCCTGACAC
ACAGTATTCCGCCGTGCTGTTCGCCATTCCGGTGGTGCTCTCACGTTCTG
TGTAGGTGGGGAATAGGGAAGTGATGATGTTTCCTCCTAGCTACCACATT
CCCCGGCCGCTGCCAAACAATGAGACGAAGATCGTGCTCTAGCTCTCTCG
ACTTCGTTTTCGTTACGCACGCAAGTGCTACTGCCTCGGTGAACCATGCT
GTACTTGGTCCTCGACGTGTTTGCCTTGTTGATTTCGGTGCCGATGCCTA
AAAATCTCTCCATCCATCTATCGATGAACCAAGGAAGTTTATCCGGCTGC
ACCTGGCTGGTTTCACGAGAGGGGAGAGAAACGGCACGGCCGGGGAAGAC
TTGGGCTTCGCCAGCGAGCTCGACGAGGGAAATGAGGCGTTGGCATGGCC
CTCGGATACGTGAGACAGTCGGGATCAGAAACATACGACGTGCTCTTCGT
TCGCGTTACGAGCTGTGCGTCACTGTCACACAAGGAAACTCTTGACACTG
TTTCGTGTGAAGATACGAACCCCCGACGCCGGATTCCGCGGCGCTCGTTG
CGTTACTTCCATCTGGGGCACAGGAGGACCGACATTTTTTGGAACTTTGT
AGAGGGCCAGTGCGGGGCGATGCAGTTGTGGCACTTCAATTTGATCAAAC
TCAACAGGAAGACGGACATGCCTGTGGATGTCGACCTTGCCCGTGTTGAA
ATATCGTTTTTTGTTCCCGCCGGGGGACGGCCAAGAAAGGGGGCTGAAAA
TCGCATGAAGAGAGTGGACGCAATCGATCAAATCCTGCGCCGTTGCCGTG
CCGGAAGTCTTACACCAGTCTACGATCGGCATCGCCGTCAAACTTCTGCC
CTTGTTTTTTCGACAGCTTCAGGGGGTGGTGGAGCGAGGGCACCCCTGAG
GAGGAATACGAAGATAGCATTTTCAACCTCTACACGGCCAAGACTCTCGT
GACAGGAGTCCCCTACACAGCCATCATCGATCGATCGTCTAGCCTCAAGT
CCAACTGTGGCCATCCTGTGAGTCGCCGAGACCCCAAAACGTATTAGGGG
GGGGCTCGTAGAGCCAAGAATGATGTTCAGATGCTAGCAAAAGGAGACGC
AGGCGTGTCGTGGCCTGTTTGATCGAGACAGCTGACAGATCTGCCTATCG
CTATGATGTGGCCGCATGCCTGTAGATCCACCCCACGCGGTGAAACTGCT
CTTCCAGCTTCGGCTCGATCAGCAGAGGCGATATGGAAGAGCCCGAATGC
GATGTCTAGAGACTGTCGAGGGCACTTCCAGATGTTGTTAGTTTTGGCGC
TGGCCTTCCGAATTCTGCAACACCAGACCACAACCAGATGAGTCCACCCG
GCACCCCTCTTAGATTCTTACTTTCTCATACAGCTCTGGTTGACGTATAC
CTTCCTACGCCCGAACCAAGCGACGCCGGTTTGTAATCATTCGCGAGGGT
CGCGGTAATAAGCAACGGTGCGGTTCGGCTCTTTGCTGTGTTGCTGCTGG
TGCCGCTGATGCCACATTGTTGGTCCCGTAATTCCTGCAGAAGGTAACAG
CGAATGATGGCAGCGCGCACGGTCGCACTGCTGCGTAATAACAATAAAAA
GGCTGCCATCATCACCACCACCCTCACAAACAACCACAACAACAACAACA
ACAACAACAACAACAGATGGACTTCTCGGCCTTCTACGCGTGGGTCGACG
ACGAAACAACATCCTACAAGATGTTTGGCAAGGTGGACTACGACATCGAG
ACCATTCAAGAGATTCCCATGAGCTGCTACGTGGCTCCGGCCTCCCTCAC
GTAAGGAAAAATGTTGCCAACGAAGACTGTGAACCAAGGAGATATGAATG
CGGTACGATATGTGGTGCGTTGTTGGGACGAAGCGGACATCTTGAAACGC
CCGCCCCCTGTCCTTGCACTTTCCCGGTTCATGCCAAAGCGGTTCGTGTG
TCCCCCGGCTCCACAACGATTCAGATCATGGAGATGAAGGAAGACGACTA
TACGTATAGGTTCATATCGTTTCTAATAGTACGGAGCGTATCGTTTGAGT
GTGCCACCAGGAACGTCGGCGTCGTGTCCCCGACATCAATCGTAGCGAAA
TCAGACTGGCGTGCTTTCCTCAGACGGGTTACCTCTCTTCCCTTCCGCTG
CACCAAAAGTCCTCTTGCCCCAAACAAATGTGTGTCAGGTTCGACCCGCC
GCTACCTCGAACGAAGACCCACATCACCATTGCC
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1423:11897..17030+

>mRNA_H-canaliculatus_F_contig1423.3328.1 ID=mRNA_H-canaliculatus_F_contig1423.3328.1|Name=mRNA_H-canaliculatus_F_contig1423.3328.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1368bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1423:11897..17030+ (Hapterophycus canaliculatus Oshoro5f female)
ATAGCTGAGAGCGGCCAAGGGGGAAGCTTTGTGCCTCGTCTACTTCTTTT
CAGCTCTTTAAGACGGCAAACGCGGCGACGAGAAAAACCCTCTCTACGTT
CCGATTGTCAGGACCTAATACAGCGCTTATCGTCACCATCACCTTCGACA
TCTCCATCATCCGCAACGGCATTGATACCAACTGCGGAAAGACAAAGTAC
GAAGAGCAGAATTCGATCTTGTCTAAGGTCGTCAAAATTTCGGAGAGGAA
ATAGCTGAGAGCGGCCAAGGGGGAAGCTTTGTGCCTCGTCTACTTCTTTT
CAGCTCTTTAAGACGGCAAACGCGGCGACGAGAAAAACCCTCTCTACGTT
CCGATTGTCAGGACCTAATACAGCGCTTATCGTCACCATCACCTTCGACA
TCTCCATCATCCGCAACGGCATTGATACCAACTGCGGAAAGACAAAGTAC
GAAGAGCAGAATTCGATCTTGTCTAAGGTCGTCAAAATTTCGGAGAGGAA
CTGGTTTCACGAGAGGGGAGAGAAACGGCACGGCCGGGGAAGACTTGGGC
TTCGCCAGCGAGCTCGACGAGGGAAATGAGGCGTTGGCATGGCCCTCGGA
TACCTGGTTTCACGAGAGGGGAGAGAAACGGCACGGCCGGGGAAGACTTG
GGCTTCGCCAGCGAGCTCGACGAGGGAAATGAGGCGTTGGCATGGCCCTC
GGATACCTTCAGGGGGTGGTGGAGCGAGGGCACCCCTGAGGAGGAATACG
AAGATAGCATTTTCAACCTCTACACGGCCAAGACTCTCGTGACAGGAGTC
CCCTACACAGCCATCATCGATCGATCGTCTAGCCTCAAGTCCAACTGTGG
CCATCCTCTTCAGGGGGTGGTGGAGCGAGGGCACCCCTGAGGAGGAATAC
GAAGATAGCATTTTCAACCTCTACACGGCCAAGACTCTCGTGACAGGAGT
CCCCTACACAGCCATCATCGATCGATCGTCTAGCCTCAAGTCCAACTGTG
GCCATCCTATGGACTTCTCGGCCTTCTACGCGTGGGTCGACGACGAAACA
ACATCCTACAAGATGTTTGGCAAGGTGGACTACGACATCGAGACCATTCA
AGAGATTCCCATGAGCTGCTACGTGGCTCCGGCCTCCCTCACATGGACTT
CTCGGCCTTCTACGCGTGGGTCGACGACGAAACAACATCCTACAAGATGT
TTGGCAAGGTGGACTACGACATCGAGACCATTCAAGAGATTCCCATGAGC
TGCTACGTGGCTCCGGCCTCCCTCACGTTCGACCCGCCGCTACCTCGAAC
GAAGACCCACATCACCATTGCCGTTCGACCCGCCGCTACCTCGAACGAAG
ACCCACATCACCATTGCC
back to top