mRNA_H-canaliculatus_F_contig14201.3315.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14201.3315.1
Unique NamemRNA_H-canaliculatus_F_contig14201.3315.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14201.3315.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14201contigH-canaliculatus_F_contig14201:1145..1472 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size330
Cds size327
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929170.7678301-CDS-H-canaliculatus_F_contig14201:1144..14711622929170.7678301-CDS-H-canaliculatus_F_contig14201:1144..1471Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14201 1145..1471 +
1696845704.694794-CDS-H-canaliculatus_F_contig14201:1144..14711696845704.694794-CDS-H-canaliculatus_F_contig14201:1144..1471Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14201 1145..1471 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14201.3315.1prot_H-canaliculatus_F_contig14201.3315.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14201 1145..1471 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14201.3315.1

>prot_H-canaliculatus_F_contig14201.3315.1 ID=prot_H-canaliculatus_F_contig14201.3315.1|Name=mRNA_H-canaliculatus_F_contig14201.3315.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=109bp
KHRCEERESSRLLRLDVEQGRACRGGGLKERRGTIARTWVARSTRSECCD
SPVDVSCSKRGYGCACFFTQSLVGSCFDCSTSQWTTKTKSGKSARRRDKK
IAQRTEYEK
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mRNA from alignment at H-canaliculatus_F_contig14201:1145..1472+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14201.3315.1 ID=mRNA_H-canaliculatus_F_contig14201.3315.1|Name=mRNA_H-canaliculatus_F_contig14201.3315.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=328bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14201:1145..1472+ (Hapterophycus canaliculatus Oshoro5f female)
AAGCACAGGTGCGAAGAGCGCGAGTCGAGTCGGCTGCTGCGGCTGGATGT
CGAGCAGGGCAGGGCGTGTCGTGGGGGCGGCCTAAAAGAACGACGTGGAA
CGATCGCGCGGACGTGGGTAGCAAGGTCAACGCGCTCGGAATGCTGCGAC
AGCCCGGTCGACGTCTCGTGTTCGAAACGTGGGTACGGCTGCGCGTGTTT
TTTTACTCAGTCGTTAGTTGGTTCGTGCTTCGACTGTTCTACTTCCCAGT
GGACGACTAAAACGAAAAGTGGGAAGAGCGCTCGACGAAGGGACAAGAAA
ATTGCCCAACGCACCGAATACGAAAAAC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14201:1145..1472+

>mRNA_H-canaliculatus_F_contig14201.3315.1 ID=mRNA_H-canaliculatus_F_contig14201.3315.1|Name=mRNA_H-canaliculatus_F_contig14201.3315.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=654bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14201:1145..1472+ (Hapterophycus canaliculatus Oshoro5f female)
AAGCACAGGTGCGAAGAGCGCGAGTCGAGTCGGCTGCTGCGGCTGGATGT
CGAGCAGGGCAGGGCGTGTCGTGGGGGCGGCCTAAAAGAACGACGTGGAA
CGATCGCGCGGACGTGGGTAGCAAGGTCAACGCGCTCGGAATGCTGCGAC
AGCCCGGTCGACGTCTCGTGTTCGAAACGTGGGTACGGCTGCGCGTGTTT
TTTTACTCAGTCGTTAGTTGGTTCGTGCTTCGACTGTTCTACTTCCCAGT
GGACGACTAAAACGAAAAGTGGGAAGAGCGCTCGACGAAGGGACAAGAAA
ATTGCCCAACGCACCGAATACGAAAAAAAGCACAGGTGCGAAGAGCGCGA
GTCGAGTCGGCTGCTGCGGCTGGATGTCGAGCAGGGCAGGGCGTGTCGTG
GGGGCGGCCTAAAAGAACGACGTGGAACGATCGCGCGGACGTGGGTAGCA
AGGTCAACGCGCTCGGAATGCTGCGACAGCCCGGTCGACGTCTCGTGTTC
GAAACGTGGGTACGGCTGCGCGTGTTTTTTTACTCAGTCGTTAGTTGGTT
CGTGCTTCGACTGTTCTACTTCCCAGTGGACGACTAAAACGAAAAGTGGG
AAGAGCGCTCGACGAAGGGACAAGAAAATTGCCCAACGCACCGAATACGA
AAAA
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