mRNA_H-canaliculatus_F_contig1419.3297.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1419.3297.1
Unique NamemRNA_H-canaliculatus_F_contig1419.3297.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1419.3297.1 vs. uniprot
Match: A0A6H5JGC6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGC6_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 4.410e-7
Identity = 36/54 (66.67%), Postives = 37/54 (68.52%), Query Frame = 1 
Query:  508 AADATLPPDFIPEVAFDEAPSVRFVFSARLEPAGKRRKKHNGEAGSGDGGGEGG 669
            AA ATLPP FIPE AFD+APSVRFVFSARLEPA    K        GDGG  GG
Sbjct:  334 AAAATLPPGFIPEAAFDDAPSVRFVFSARLEPAPTSSKGGKKGFQGGDGGANGG 387
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1419.3297.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JGC6_9PHAE4.410e-766.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1419contigH-canaliculatus_F_contig1419:1818..2503 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size688
Cds size684
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929167.8178914-CDS-H-canaliculatus_F_contig1419:1817..25011622929167.8178914-CDS-H-canaliculatus_F_contig1419:1817..2501Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1419 1818..2501 +
1696845703.2577982-CDS-H-canaliculatus_F_contig1419:1817..25011696845703.2577982-CDS-H-canaliculatus_F_contig1419:1817..2501Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1419 1818..2501 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1419.3297.1prot_H-canaliculatus_F_contig1419.3297.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1419 1818..2501 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1419.3297.1

>prot_H-canaliculatus_F_contig1419.3297.1 ID=prot_H-canaliculatus_F_contig1419.3297.1|Name=mRNA_H-canaliculatus_F_contig1419.3297.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=228bp
GTEGGEEDTAGGSSSGGGGKRRQRQRQRQLDGNKQGVGASPQAGRHHAAA
AAAAEVVGVAATLRRAKADSVVASLSTPSLPSSLSGGDATGGEGFGGSFL
ARGRGVVGDRRPHRADVKETSGETGAAQEAGRRQGSDEQQHQQHQQHQHR
QELEAEEGDDGEEEDARGAAADATLPPDFIPEVAFDEAPSVRFVFSARLE
PAGKRRKKHNGEAGSGDGGGEGGGRAKT
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mRNA from alignment at H-canaliculatus_F_contig1419:1818..2503+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1419.3297.1 ID=mRNA_H-canaliculatus_F_contig1419.3297.1|Name=mRNA_H-canaliculatus_F_contig1419.3297.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=686bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1419:1818..2503+ (Hapterophycus canaliculatus Oshoro5f female)
GGGACGGAGGGTGGGGAGGAAGATACCGCTGGCGGCAGCAGCAGCGGTGG
CGGCGGCAAGAGGCGGCAGCGGCAGCGGCAGCGGCAGCTCGATGGAAACA
AGCAAGGGGTAGGTGCTTCACCGCAGGCGGGGAGACACCATGCGGCAGCC
GCGGCCGCGGCGGAGGTGGTGGGGGTGGCGGCCACGCTCAGAAGAGCGAA
GGCCGACTCAGTGGTGGCTTCGCTGTCGACGCCGTCATTGCCATCGTCTC
TGTCCGGAGGCGATGCTACGGGCGGTGAGGGCTTTGGCGGAAGCTTTCTT
GCGAGAGGCAGAGGCGTCGTTGGAGACCGCCGTCCGCATCGCGCCGACGT
CAAGGAGACGAGCGGGGAGACGGGAGCGGCACAAGAAGCGGGACGCCGGC
AAGGTTCCGACGAACAGCAGCACCAGCAACACCAGCAACACCAGCATCGG
CAAGAATTGGAGGCGGAGGAGGGAGACGACGGAGAGGAGGAGGACGCGAG
AGGAGCTGCGGCGGACGCGACCCTACCTCCTGACTTTATTCCCGAAGTGG
CCTTCGACGAAGCTCCTTCCGTTCGGTTCGTTTTCTCGGCGAGGCTTGAG
CCGGCGGGCAAGCGCAGGAAGAAGCACAACGGGGAGGCAGGGAGCGGCGA
CGGTGGCGGCGAAGGAGGGGGGCGGGCCAAGACAAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1419:1818..2503+

>mRNA_H-canaliculatus_F_contig1419.3297.1 ID=mRNA_H-canaliculatus_F_contig1419.3297.1|Name=mRNA_H-canaliculatus_F_contig1419.3297.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1368bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1419:1818..2503+ (Hapterophycus canaliculatus Oshoro5f female)
GGGACGGAGGGTGGGGAGGAAGATACCGCTGGCGGCAGCAGCAGCGGTGG
CGGCGGCAAGAGGCGGCAGCGGCAGCGGCAGCGGCAGCTCGATGGAAACA
AGCAAGGGGTAGGTGCTTCACCGCAGGCGGGGAGACACCATGCGGCAGCC
GCGGCCGCGGCGGAGGTGGTGGGGGTGGCGGCCACGCTCAGAAGAGCGAA
GGCCGACTCAGTGGTGGCTTCGCTGTCGACGCCGTCATTGCCATCGTCTC
TGTCCGGAGGCGATGCTACGGGCGGTGAGGGCTTTGGCGGAAGCTTTCTT
GCGAGAGGCAGAGGCGTCGTTGGAGACCGCCGTCCGCATCGCGCCGACGT
CAAGGAGACGAGCGGGGAGACGGGAGCGGCACAAGAAGCGGGACGCCGGC
AAGGTTCCGACGAACAGCAGCACCAGCAACACCAGCAACACCAGCATCGG
CAAGAATTGGAGGCGGAGGAGGGAGACGACGGAGAGGAGGAGGACGCGAG
AGGAGCTGCGGCGGACGCGACCCTACCTCCTGACTTTATTCCCGAAGTGG
CCTTCGACGAAGCTCCTTCCGTTCGGTTCGTTTTCTCGGCGAGGCTTGAG
CCGGCGGGCAAGCGCAGGAAGAAGCACAACGGGGAGGCAGGGAGCGGCGA
CGGTGGCGGCGAAGGAGGGGGGCGGGCCAAGACAGGGACGGAGGGTGGGG
AGGAAGATACCGCTGGCGGCAGCAGCAGCGGTGGCGGCGGCAAGAGGCGG
CAGCGGCAGCGGCAGCGGCAGCTCGATGGAAACAAGCAAGGGGTAGGTGC
TTCACCGCAGGCGGGGAGACACCATGCGGCAGCCGCGGCCGCGGCGGAGG
TGGTGGGGGTGGCGGCCACGCTCAGAAGAGCGAAGGCCGACTCAGTGGTG
GCTTCGCTGTCGACGCCGTCATTGCCATCGTCTCTGTCCGGAGGCGATGC
TACGGGCGGTGAGGGCTTTGGCGGAAGCTTTCTTGCGAGAGGCAGAGGCG
TCGTTGGAGACCGCCGTCCGCATCGCGCCGACGTCAAGGAGACGAGCGGG
GAGACGGGAGCGGCACAAGAAGCGGGACGCCGGCAAGGTTCCGACGAACA
GCAGCACCAGCAACACCAGCAACACCAGCATCGGCAAGAATTGGAGGCGG
AGGAGGGAGACGACGGAGAGGAGGAGGACGCGAGAGGAGCTGCGGCGGAC
GCGACCCTACCTCCTGACTTTATTCCCGAAGTGGCCTTCGACGAAGCTCC
TTCCGTTCGGTTCGTTTTCTCGGCGAGGCTTGAGCCGGCGGGCAAGCGCA
GGAAGAAGCACAACGGGGAGGCAGGGAGCGGCGACGGTGGCGGCGAAGGA
GGGGGGCGGGCCAAGACA
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