mRNA_H-canaliculatus_F_contig14082.3228.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14082.3228.1
Unique NamemRNA_H-canaliculatus_F_contig14082.3228.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig14082.3228.1 vs. uniprot
Match: A0A6H5JIA0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIA0_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 2.550e-7
Identity = 50/111 (45.05%), Postives = 67/111 (60.36%), Query Frame = 2 
Query:  158 SAQPRRRRSTLDMLHGGKN---DEGSERRLPSNGDMRPSLDAGGPVLLTDAQGFLDLGAASADGESGARLAK--AKRSDGLDPR-----VAELEVKLQELRRIGDKIREQA 460
            +++PR +RS LD   G K    D G  RR   +   + SL+  G   L DAQGF+DLGAAS   E  ARLA+   K+ +G  P      VAELE KL+ELR+IGD+I+++A
Sbjct:  586 NSRPRSQRSLLDEEGGKKTPLLDGG--RRSSFSCQHKVSLERDGGARLVDAQGFVDLGAASTCREDSARLAELEGKQPEGPYPEISDTGVAELEAKLEELRKIGDRIKDEA 694
[Close]
BLAST of mRNA_H-canaliculatus_F_contig14082.3228.1 vs. uniprot
Match: D8LDJ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDJ2_ECTSI)

HSP 1 Score: 58.5 bits (140), Expect = 1.930e-6
Identity = 48/109 (44.04%), Postives = 64/109 (58.72%), Query Frame = 2 
Query:  161 AQPRRRRSTLDMLHGGKNDE--GSERRLPSNGDMRPSLDAGGPVLLTDAQGFLDLGAASADGESGARLA--KAKRSDGLDPR-----VAELEVKLQELRRIGDKIREQA 460
            A+P+ +RS LD   GGK       ERR   +   + SL+  G   L DAQGF DLGAA    E  A LA  + K+S+G  P      VAELE KL++LR+IGD+I+++A
Sbjct:  291 ARPQNQRSLLDA-EGGKKTPLVDGERRSSFSCRDKVSLERDGRARLVDAQGFFDLGAAGTCREDSAGLAGLEGKQSEGPYPEISDRGVAELEAKLEDLRKIGDRIKDEA 398
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14082.3228.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JIA0_9PHAE2.550e-745.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LDJ2_ECTSI1.930e-644.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14082contigH-canaliculatus_F_contig14082:734..2420 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size663
Cds size363
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14082.3228.1prot_H-canaliculatus_F_contig14082.3228.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14082 1728..2313 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929159.0260386-UTR-H-canaliculatus_F_contig14082:733..7941622929159.0260386-UTR-H-canaliculatus_F_contig14082:733..794Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14082 734..794 +
1696845699.3347538-UTR-H-canaliculatus_F_contig14082:733..7941696845699.3347538-UTR-H-canaliculatus_F_contig14082:733..794Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14082 734..794 +
1622929159.0441256-UTR-H-canaliculatus_F_contig14082:1595..17271622929159.0441256-UTR-H-canaliculatus_F_contig14082:1595..1727Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14082 1596..1727 +
1696845699.3493695-UTR-H-canaliculatus_F_contig14082:1595..17271696845699.3493695-UTR-H-canaliculatus_F_contig14082:1595..1727Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14082 1596..1727 +
1622929159.091964-UTR-H-canaliculatus_F_contig14082:2313..24201622929159.091964-UTR-H-canaliculatus_F_contig14082:2313..2420Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14082 2314..2420 +
1696845699.3839793-UTR-H-canaliculatus_F_contig14082:2313..24201696845699.3839793-UTR-H-canaliculatus_F_contig14082:2313..2420Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14082 2314..2420 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929159.060004-CDS-H-canaliculatus_F_contig14082:1727..18981622929159.060004-CDS-H-canaliculatus_F_contig14082:1727..1898Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14082 1728..1898 +
1696845699.3650384-CDS-H-canaliculatus_F_contig14082:1727..18981696845699.3650384-CDS-H-canaliculatus_F_contig14082:1727..1898Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14082 1728..1898 +
1622929159.0774453-CDS-H-canaliculatus_F_contig14082:2121..23131622929159.0774453-CDS-H-canaliculatus_F_contig14082:2121..2313Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14082 2122..2313 +
1696845699.375029-CDS-H-canaliculatus_F_contig14082:2121..23131696845699.375029-CDS-H-canaliculatus_F_contig14082:2121..2313Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14082 2122..2313 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14082.3228.1

>prot_H-canaliculatus_F_contig14082.3228.1 ID=prot_H-canaliculatus_F_contig14082.3228.1|Name=mRNA_H-canaliculatus_F_contig14082.3228.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=121bp
MLHGGKNDEGSERRLPSNGDMRPSLDAGGPVLLTDAQGFLDLGAASADGE
SGARLAKAKRSDGLDPRVAELEVKLQELRRIGDKIREQAVRVEGLVLACT
AHLLWCSAAVGGCSVTNRYW*
back to top

mRNA from alignment at H-canaliculatus_F_contig14082:734..2420+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14082.3228.1 ID=mRNA_H-canaliculatus_F_contig14082.3228.1|Name=mRNA_H-canaliculatus_F_contig14082.3228.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1687bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14082:734..2420+ (Hapterophycus canaliculatus Oshoro5f female)
GGCTGAGCACCGGTCAAGCCGCAAAGTTCCGAGAGGTCCGAGCACGCGAG
TCGCTCCCGATGCAGCGAAGGCCAGAGCCGCTGCCGTCGCCGCCGTCGCC
GCCTGCGAAAGTGCTGGCCCGGAGAACGGGCAGCTTTCAGCGAGCGTTGG
CGACGTTGTTGATGGCAGCGGCGCGAGCGCTGTCGCACGCGGGCTTGAAG
GCACCGCAGAAGTGTCGGGGACGGACGTCGGCGGCGTCGCCTCATCTATC
GCCACCGACGGAGCAACATCCCTCGCCGGAAGCTCCGCCGGGTCAAGCAC
AACCGGCAACAAAAAGCTTCACAACAAAAGCGCAGCCAACCTCGTGAGCG
CTGCTCATGCTCACGCCTCCGATAGCGCCGCGAGCGCCGAGTGGAGCGGG
CGCACCGCTAGAGGCTTTGGAGGTGCGTGGGACCGAGGCCTGATGACCAG
GATGCTGCTCGACGCTGCCGGAGTGGCAGCCGAGGCTGAACAGAAAGCTG
GAGGCTTGCGGATGCAACACGCGGGTGGAAGTGAGGCGGGTCGAATGACT
GTCAACGGTGGTGGTGGTGGCGATGGCAATTGCGGGAATCGTGCCGGTGT
TGGCGCGGATGATACCCAAGAAGGCTACAGCGGGCAGAGCCTCGGCGAGG
AGGTGGAGGCCGTGCGCGCCCTCAGCTACCGCGTGCGCCGCTCTGCATCG
CCCTCCTCCTCCTCCCCCTCCTCCTCCTCGTCTTCTTCTTGTTCGACTCC
TTCGCGTCCGATCCCTCCTCCTCTTCCCGCGGCGGCTGCTGCGGCTGCGG
CTGCGGCTGCGGCTACTGCTGCTGCTGCGCTTGCGCCTACCGCCGTTATC
CGGGCGGCGGCGGCGGCGGCGGCGACGTTAGGAGACTCCGGCGCCAAGAA
GAATCCACGCGACAAACCACCCGCGGAAACGCCCTCCAGGAGCCAGCCAA
GGACCGGCAGCGCTCAGCCACGCCGACGGAGGTCTACGTTAGACATGCTG
CACGGCGGGAAGAACGACGAAGGCAGTGAGAGGCGACTGCCGTCGAACGG
CGACATGCGGCCTTCGCTGGATGCGGGCGGCCCGGTGCTCCTGACCGATG
CGCAGGGGTTCTTGGACCTGGGAGCCGCTAGTGCTGACGGGGAGAGCGGG
GCAAGGCTCGCGAAGGTGTGGATGGGGGCGCCGCGGGGAATGACGTGTGG
GTGGTGTCCTTTTTTCGGCCGAAGTTCGCGGGATCGGTGGTCACGGTCAC
AGCATGTGCTCGCTCCGGGTTTGATCTTGGCCTCTTTTTCCCGAAGCGTG
CGCGCGGAGAGGTGGACGTTTCGTGACCCTTGCCGCACCGCCTTGCTCTC
TGCTCCAAAACCTGACCCGCTGGCGTCGACGTTAGCAGGCAAAACGGTCA
GATGGCCTCGACCCACGAGTGGCGGAGCTAGAAGTAAAGCTACAGGAGCT
GAGGCGGATTGGGGACAAGATCAGGGAGCAGGCGGTGAGAGTGGAGGGCT
TGGTTTTGGCGTGCACCGCGCATTTGCTCTGGTGCTCCGCTGCTGTGGGT
GGATGCTCCGTTACCAATCGCTACTGGTAGGGCTGAGGGGGTTTGGTCTC
GTCAGGTTTTTTGTCGGTCATTGTGGTGCGTTTCTCATGACGGTGCTTGG
GGATGCTGGAATCCCAAACGATGTTAGTATGGCACAC
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14082:734..2420+

>mRNA_H-canaliculatus_F_contig14082.3228.1 ID=mRNA_H-canaliculatus_F_contig14082.3228.1|Name=mRNA_H-canaliculatus_F_contig14082.3228.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=726bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14082:734..2420+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCTGCACGGCGGGAAGAACGACGAAGGCAGTGAGAGGCGACTGCCGTC
GAACGGCGACATGCGGCCTTCGCTGGATGCGGGCGGCCCGGTGCTCCTGA
CCGATGCGCAGGGGTTCTTGGACCTGGGAGCCGCTAGTGCTGACGGGGAG
AGCGGGGCAAGGCTCGCGAAGATGCTGCACGGCGGGAAGAACGACGAAGG
CAGTGAGAGGCGACTGCCGTCGAACGGCGACATGCGGCCTTCGCTGGATG
CGGGCGGCCCGGTGCTCCTGACCGATGCGCAGGGGTTCTTGGACCTGGGA
GCCGCTAGTGCTGACGGGGAGAGCGGGGCAAGGCTCGCGAAGGCAAAACG
GTCAGATGGCCTCGACCCACGAGTGGCGGAGCTAGAAGTAAAGCTACAGG
AGCTGAGGCGGATTGGGGACAAGATCAGGGAGCAGGCGGTGAGAGTGGAG
GGCTTGGTTTTGGCGTGCACCGCGCATTTGCTCTGGTGCTCCGCTGCTGT
GGGTGGATGCTCCGTTACCAATCGCTACTGGTAGGCAAAACGGTCAGATG
GCCTCGACCCACGAGTGGCGGAGCTAGAAGTAAAGCTACAGGAGCTGAGG
CGGATTGGGGACAAGATCAGGGAGCAGGCGGTGAGAGTGGAGGGCTTGGT
TTTGGCGTGCACCGCGCATTTGCTCTGGTGCTCCGCTGCTGTGGGTGGAT
GCTCCGTTACCAATCGCTACTGGTAG
back to top