mRNA_H-canaliculatus_F_contig14061.3215.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14061.3215.1
Unique NamemRNA_H-canaliculatus_F_contig14061.3215.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14061.3215.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14061contigH-canaliculatus_F_contig14061:1695..2129 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size435
Cds size336
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14061.3215.1prot_H-canaliculatus_F_contig14061.3215.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14061 1764..2099 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929156.2880573-UTR-H-canaliculatus_F_contig14061:1694..17631622929156.2880573-UTR-H-canaliculatus_F_contig14061:1694..1763Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14061 1695..1763 +
1696845698.5236375-UTR-H-canaliculatus_F_contig14061:1694..17631696845698.5236375-UTR-H-canaliculatus_F_contig14061:1694..1763Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14061 1695..1763 +
1622929156.3125112-UTR-H-canaliculatus_F_contig14061:2099..21291622929156.3125112-UTR-H-canaliculatus_F_contig14061:2099..2129Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14061 2100..2129 +
1696845698.542838-UTR-H-canaliculatus_F_contig14061:2099..21291696845698.542838-UTR-H-canaliculatus_F_contig14061:2099..2129Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14061 2100..2129 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929156.2996464-CDS-H-canaliculatus_F_contig14061:1763..20991622929156.2996464-CDS-H-canaliculatus_F_contig14061:1763..2099Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14061 1764..2099 +
1696845698.5338466-CDS-H-canaliculatus_F_contig14061:1763..20991696845698.5338466-CDS-H-canaliculatus_F_contig14061:1763..2099Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14061 1764..2099 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14061.3215.1

>prot_H-canaliculatus_F_contig14061.3215.1 ID=prot_H-canaliculatus_F_contig14061.3215.1|Name=mRNA_H-canaliculatus_F_contig14061.3215.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=112bp
MVLLGEIAGCDVRPVHFTRAFYLYTYWRPVSTPTKDSTWRKPQNAKDQKW
TSWLLSPLVHDALPVTTNAHSMPCPAAFQFVALFRVQKSEPATERLMNLL
RHVVSASVQQD*
back to top

mRNA from alignment at H-canaliculatus_F_contig14061:1695..2129+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14061.3215.1 ID=mRNA_H-canaliculatus_F_contig14061.3215.1|Name=mRNA_H-canaliculatus_F_contig14061.3215.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=435bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14061:1695..2129+ (Hapterophycus canaliculatus Oshoro5f female)
GTACAATATCATTGAGCATATCGATCTCCGTAGATCCTGTCCGGCCCACT
CGTGGGAGAGAAGGTGCGGATGGTGTTGTTGGGTGAGATCGCTGGGTGCG
ATGTCCGTCCCGTCCACTTTACGAGAGCCTTTTACTTGTACACCTACTGG
CGGCCTGTATCAACTCCAACGAAGGATTCGACTTGGAGAAAGCCTCAAAA
TGCCAAGGATCAGAAATGGACAAGCTGGCTCCTCTCACCCCTTGTTCACG
ATGCATTGCCAGTGACAACCAACGCACACAGTATGCCGTGTCCTGCGGCC
TTCCAGTTTGTCGCTCTCTTCAGGGTGCAGAAAAGCGAGCCAGCCACGGA
AAGATTGATGAATCTCCTTCGACATGTTGTCTCGGCATCCGTACAACAAG
ATTAGCGTCCGACAACGCTGAATTATATGCCTTCC
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14061:1695..2129+

>mRNA_H-canaliculatus_F_contig14061.3215.1 ID=mRNA_H-canaliculatus_F_contig14061.3215.1|Name=mRNA_H-canaliculatus_F_contig14061.3215.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=672bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14061:1695..2129+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGTGTTGTTGGGTGAGATCGCTGGGTGCGATGTCCGTCCCGTCCACTT
TACGAGAGCCTTTTACTTGTACACCTACTGGCGGCCTGTATCAACTCCAA
CGAAGGATTCGACTTGGAGAAAGCCTCAAAATGCCAAGGATCAGAAATGG
ACAAGCTGGCTCCTCTCACCCCTTGTTCACGATGCATTGCCAGTGACAAC
CAACGCACACAGTATGCCGTGTCCTGCGGCCTTCCAGTTTGTCGCTCTCT
TCAGGGTGCAGAAAAGCGAGCCAGCCACGGAAAGATTGATGAATCTCCTT
CGACATGTTGTCTCGGCATCCGTACAACAAGATTAGATGGTGTTGTTGGG
TGAGATCGCTGGGTGCGATGTCCGTCCCGTCCACTTTACGAGAGCCTTTT
ACTTGTACACCTACTGGCGGCCTGTATCAACTCCAACGAAGGATTCGACT
TGGAGAAAGCCTCAAAATGCCAAGGATCAGAAATGGACAAGCTGGCTCCT
CTCACCCCTTGTTCACGATGCATTGCCAGTGACAACCAACGCACACAGTA
TGCCGTGTCCTGCGGCCTTCCAGTTTGTCGCTCTCTTCAGGGTGCAGAAA
AGCGAGCCAGCCACGGAAAGATTGATGAATCTCCTTCGACATGTTGTCTC
GGCATCCGTACAACAAGATTAG
back to top