mRNA_H-canaliculatus_F_contig140.3178.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig140.3178.1
Unique NamemRNA_H-canaliculatus_F_contig140.3178.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig140.3178.1 vs. uniprot
Match: D7FV65_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV65_ECTSI)

HSP 1 Score: 132 bits (331), Expect = 1.700e-35
Identity = 69/103 (66.99%), Postives = 80/103 (77.67%), Query Frame = 3 
Query:    3 KGDMELAEKDFSDAVSACLREFGEVDIVTARTLAHLARVCSFQGMVEVAAPMYERILRIHEALPVPSSCDHAVALRELAVLRDKCGMPTDASMLRRRADGIML 311
            +G  E+AEK+F+ AVSACL  FGE DIVTARTLAHLARVC  QG V+VA  MYERILRIHEALP P + DHAVAL ELA +R++ G    A +LRRRAD IM+
Sbjct:   17 QGSTEIAEKEFTKAVSACLTAFGETDIVTARTLAHLARVCRLQGKVDVAIQMYERILRIHEALPEPLNSDHAVALGELAAIREEGGSQGSADILRRRADVIMV 119
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig140.3178.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FV65_ECTSI1.700e-3566.99Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig140contigH-canaliculatus_F_contig140:44618..45475 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size627
Cds size471
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig140.3178.1prot_H-canaliculatus_F_contig140.3178.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig140 44629..45330 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929147.6624649-UTR-H-canaliculatus_F_contig140:44617..446281622929147.6624649-UTR-H-canaliculatus_F_contig140:44617..44628Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig140 44618..44628 +
1696845695.8971574-UTR-H-canaliculatus_F_contig140:44617..446281696845695.8971574-UTR-H-canaliculatus_F_contig140:44617..44628Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig140 44618..44628 +
1622929147.9627595-UTR-H-canaliculatus_F_contig140:45330..454751622929147.9627595-UTR-H-canaliculatus_F_contig140:45330..45475Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig140 45331..45475 +
1696845695.9292698-UTR-H-canaliculatus_F_contig140:45330..454751696845695.9292698-UTR-H-canaliculatus_F_contig140:45330..45475Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig140 45331..45475 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929147.9199498-CDS-H-canaliculatus_F_contig140:44628..446911622929147.9199498-CDS-H-canaliculatus_F_contig140:44628..44691Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig140 44629..44691 +
1696845695.9082243-CDS-H-canaliculatus_F_contig140:44628..446911696845695.9082243-CDS-H-canaliculatus_F_contig140:44628..44691Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig140 44629..44691 +
1622929147.9421904-CDS-H-canaliculatus_F_contig140:44922..453301622929147.9421904-CDS-H-canaliculatus_F_contig140:44922..45330Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig140 44923..45330 +
1696845695.920397-CDS-H-canaliculatus_F_contig140:44922..453301696845695.920397-CDS-H-canaliculatus_F_contig140:44922..45330Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig140 44923..45330 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig140.3178.1

>prot_H-canaliculatus_F_contig140.3178.1 ID=prot_H-canaliculatus_F_contig140.3178.1|Name=mRNA_H-canaliculatus_F_contig140.3178.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=157bp
MELAEKDFSDAVSACLREFGEVDIVTARTLAHLARVCSFQGMVEVAAPMY
ERILRIHEALPVPSSCDHAVALRELAVLRDKCGMPTDASMLRRRADGIML
GAQVPVAASAKSNGIEIGRDEAEDEGSDNASESEDGDQEESDPDHDSGAF
DEEVVE*
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mRNA from alignment at H-canaliculatus_F_contig140:44618..45475+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig140.3178.1 ID=mRNA_H-canaliculatus_F_contig140.3178.1|Name=mRNA_H-canaliculatus_F_contig140.3178.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=858bp|location=Sequence derived from alignment at H-canaliculatus_F_contig140:44618..45475+ (Hapterophycus canaliculatus Oshoro5f female)
AGAAAGGCGATATGGAGCTCGCGGAGAAAGATTTTTCGGATGCAGTATCT
GCTTGTCTACGCGAGTTCGGAGAGGTATGATCGACAGGAAGGACGTACTG
TAGACTACTCCTGCACGATCCCACTTTCGGCGTTGGTGCGCGGAGTCAAG
GGGACCTCTGACCGCAGCAACCGATTAATGAATCACACCGCCTCACAACT
CACTATTAGCCGCTACTCGTTTCATACGGATGGACGATTGCTGTTGAGCT
TCATTTTCAAATCGGAAAACCACCTTTTGTCCTCATGGTGCTGCGTTTGA
ATCAGGTCGATATCGTTACGGCGAGAACGCTTGCACACCTTGCTCGAGTG
TGCTCATTTCAGGGAATGGTGGAGGTTGCGGCGCCTATGTACGAGAGGAT
ACTGCGCATCCACGAAGCTCTGCCAGTACCCTCGAGTTGCGACCATGCGG
TTGCCTTACGCGAGCTTGCCGTGCTTCGCGACAAATGCGGGATGCCTACG
GATGCTTCTATGCTTCGTCGCCGAGCCGATGGGATTATGCTCGGTGCTCA
AGTACCGGTGGCTGCTTCAGCCAAGAGCAATGGCATAGAAATAGGCAGAG
ATGAGGCAGAAGACGAAGGCAGTGATAATGCTAGCGAGAGCGAAGATGGC
GATCAGGAAGAGAGCGACCCTGACCATGATTCTGGCGCATTTGATGAGGA
GGTGGTTGAGTGACGAACCCAACCTTCATTTGATACTCTACTCTGAAAGG
GGTGGGAATTGCGAAGCTAAGTTTTTGCTGGCTCCGCGAAGATTGATATG
TATATTGATATGTATGTCTCCTCGGCAACAGTGCAGATGTAATTATGTGA
TGGAAGAC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig140:44618..45475+

>mRNA_H-canaliculatus_F_contig140.3178.1 ID=mRNA_H-canaliculatus_F_contig140.3178.1|Name=mRNA_H-canaliculatus_F_contig140.3178.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=942bp|location=Sequence derived from alignment at H-canaliculatus_F_contig140:44618..45475+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGAGCTCGCGGAGAAAGATTTTTCGGATGCAGTATCTGCTTGTCTACG
CGAGTTCGGAGAGATGGAGCTCGCGGAGAAAGATTTTTCGGATGCAGTAT
CTGCTTGTCTACGCGAGTTCGGAGAGGTCGATATCGTTACGGCGAGAACG
CTTGCACACCTTGCTCGAGTGTGCTCATTTCAGGGAATGGTGGAGGTTGC
GGCGCCTATGTACGAGAGGATACTGCGCATCCACGAAGCTCTGCCAGTAC
CCTCGAGTTGCGACCATGCGGTTGCCTTACGCGAGCTTGCCGTGCTTCGC
GACAAATGCGGGATGCCTACGGATGCTTCTATGCTTCGTCGCCGAGCCGA
TGGGATTATGCTCGGTGCTCAAGTACCGGTGGCTGCTTCAGCCAAGAGCA
ATGGCATAGAAATAGGCAGAGATGAGGCAGAAGACGAAGGCAGTGATAAT
GCTAGCGAGAGCGAAGATGGCGATCAGGAAGAGAGCGACCCTGACCATGA
TTCTGGCGCATTTGATGAGGAGGTGGTTGAGTGAGTCGATATCGTTACGG
CGAGAACGCTTGCACACCTTGCTCGAGTGTGCTCATTTCAGGGAATGGTG
GAGGTTGCGGCGCCTATGTACGAGAGGATACTGCGCATCCACGAAGCTCT
GCCAGTACCCTCGAGTTGCGACCATGCGGTTGCCTTACGCGAGCTTGCCG
TGCTTCGCGACAAATGCGGGATGCCTACGGATGCTTCTATGCTTCGTCGC
CGAGCCGATGGGATTATGCTCGGTGCTCAAGTACCGGTGGCTGCTTCAGC
CAAGAGCAATGGCATAGAAATAGGCAGAGATGAGGCAGAAGACGAAGGCA
GTGATAATGCTAGCGAGAGCGAAGATGGCGATCAGGAAGAGAGCGACCCT
GACCATGATTCTGGCGCATTTGATGAGGAGGTGGTTGAGTGA
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