mRNA_H-canaliculatus_F_contig13941.3131.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13941.3131.1
Unique NamemRNA_H-canaliculatus_F_contig13941.3131.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13941.3131.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13941contigH-canaliculatus_F_contig13941:617..1254 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size491
Cds size477
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13941.3131.1prot_H-canaliculatus_F_contig13941.3131.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13941 629..1254 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929139.434291-UTR-H-canaliculatus_F_contig13941:616..6281622929139.434291-UTR-H-canaliculatus_F_contig13941:616..628Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13941 617..628 -
1696845692.3997824-UTR-H-canaliculatus_F_contig13941:616..6281696845692.3997824-UTR-H-canaliculatus_F_contig13941:616..628Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13941 617..628 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929139.4482775-CDS-H-canaliculatus_F_contig13941:628..8171622929139.4482775-CDS-H-canaliculatus_F_contig13941:628..817Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13941 629..817 -
1696845692.4096844-CDS-H-canaliculatus_F_contig13941:628..8171696845692.4096844-CDS-H-canaliculatus_F_contig13941:628..817Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13941 629..817 -
1622929139.4625533-CDS-H-canaliculatus_F_contig13941:966..12541622929139.4625533-CDS-H-canaliculatus_F_contig13941:966..1254Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13941 967..1254 -
1696845692.4179509-CDS-H-canaliculatus_F_contig13941:966..12541696845692.4179509-CDS-H-canaliculatus_F_contig13941:966..1254Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13941 967..1254 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13941.3131.1

>prot_H-canaliculatus_F_contig13941.3131.1 ID=prot_H-canaliculatus_F_contig13941.3131.1|Name=mRNA_H-canaliculatus_F_contig13941.3131.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=159bp
GAFRSQADCFVQYRLSYGVWWTASADCACFRYLFAFSSSSPGNAQQRLSS
LSHGRSTQADVSAHECAFLTALRLGIAVFLPLWQSNLKRWTDERGVRTAD
RTANQHSGKTRPTRLFPTRQIEKLQIRPWTGGLTLLVYWYQSKKPTITVL
AVAKNMTN*
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mRNA from alignment at H-canaliculatus_F_contig13941:617..1254-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13941.3131.1 ID=mRNA_H-canaliculatus_F_contig13941.3131.1|Name=mRNA_H-canaliculatus_F_contig13941.3131.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=638bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13941:617..1254- (Hapterophycus canaliculatus Oshoro5f female)
GGTGCATTTCGATCGCAAGCTGACTGTTTCGTGCAGTACCGCTTGAGCTA
CGGAGTCTGGTGGACGGCGTCGGCAGATTGCGCCTGCTTCCGATACCTCT
TTGCTTTCTCTTCTTCCTCGCCAGGGAACGCACAGCAGCGTCTTTCTTCG
CTGTCACACGGAAGATCTACACAAGCAGACGTCTCGGCTCACGAGTGCGC
TTTCCTGACGGCTTTGAGACTTGGAATCGCCGTGTTCTTACCCTTGTGGC
AATCGAATCTAAAGAGGTGGACGGATGAACGTGGTGTTGTACATGAGAAA
GTACAAGCAACAAGCCCACGATACCGAAGGGTCGACAACAACGCGTTGCC
CCTTGTACAAGGTCTTGGTTTTCGCTGCTAGTCCTGCCTTCGATTCCTAA
AGCAGACACACTCGAGACACCAAGGACACCAATCGAGAGAACGGCAGACA
GAACAGCTAACCAGCACTCGGGGAAAACACGCCCAACACGCCTGTTCCCC
ACCCGTCAAATTGAGAAACTCCAAATCAGACCGTGGACAGGAGGGCTCAC
CTTGCTCGTGTACTGGTACCAAAGCAAGAAGCCAACGATCACCGTGTTGG
CCGTGGCGAAGAACATGACCAACTGACGTAGTGGCGCG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13941:617..1254-

>mRNA_H-canaliculatus_F_contig13941.3131.1 ID=mRNA_H-canaliculatus_F_contig13941.3131.1|Name=mRNA_H-canaliculatus_F_contig13941.3131.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=954bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13941:617..1254- (Hapterophycus canaliculatus Oshoro5f female)
GGTGCATTTCGATCGCAAGCTGACTGTTTCGTGCAGTACCGCTTGAGCTA
CGGAGTCTGGTGGACGGCGTCGGCAGATTGCGCCTGCTTCCGATACCTCT
TTGCTTTCTCTTCTTCCTCGCCAGGGAACGCACAGCAGCGTCTTTCTTCG
CTGTCACACGGAAGATCTACACAAGCAGACGTCTCGGCTCACGAGTGCGC
TTTCCTGACGGCTTTGAGACTTGGAATCGCCGTGTTCTTACCCTTGTGGC
AATCGAATCTAAAGAGGTGGACGGATGAACGTGGTGTTGGTGCATTTCGA
TCGCAAGCTGACTGTTTCGTGCAGTACCGCTTGAGCTACGGAGTCTGGTG
GACGGCGTCGGCAGATTGCGCCTGCTTCCGATACCTCTTTGCTTTCTCTT
CTTCCTCGCCAGGGAACGCACAGCAGCGTCTTTCTTCGCTGTCACACGGA
AGATCTACACAAGCAGACGTCTCGGCTCACGAGTGCGCTTTCCTGACGGC
TTTGAGACTTGGAATCGCCGTGTTCTTACCCTTGTGGCAATCGAATCTAA
AGAGGTGGACGGATGAACGTGGTGTTAGAACGGCAGACAGAACAGCTAAC
CAGCACTCGGGGAAAACACGCCCAACACGCCTGTTCCCCACCCGTCAAAT
TGAGAAACTCCAAATCAGACCGTGGACAGGAGGGCTCACCTTGCTCGTGT
ACTGGTACCAAAGCAAGAAGCCAACGATCACCGTGTTGGCCGTGGCGAAG
AACATGACCAACTGAAGAACGGCAGACAGAACAGCTAACCAGCACTCGGG
GAAAACACGCCCAACACGCCTGTTCCCCACCCGTCAAATTGAGAAACTCC
AAATCAGACCGTGGACAGGAGGGCTCACCTTGCTCGTGTACTGGTACCAA
AGCAAGAAGCCAACGATCACCGTGTTGGCCGTGGCGAAGAACATGACCAA
CTGA
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