mRNA_H-canaliculatus_F_contig13928.3119.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13928.3119.1
Unique NamemRNA_H-canaliculatus_F_contig13928.3119.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13928.3119.1 vs. uniprot
Match: D7G4B7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4B7_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 6.360e-25
Identity = 62/87 (71.26%), Postives = 62/87 (71.26%), Query Frame = 1 
Query:    1 EFSAGHAKRVIESGVVLERKASITGAVLELKNKSQFSVEDATATISSGAISERTRKLKEEQEALRHKHATERQDTDLPFISAEMSRQ 261
            EFSAGHAKRVIESGVVLERKASITG V ELKNKSQ                    KLKEEQEALR KHATERQDTD P ISAEMSRQ
Sbjct:  168 EFSAGHAKRVIESGVVLERKASITGVVPELKNKSQXXXXXXXXXXXXXXXXXXXXKLKEEQEALRQKHATERQDTDFPLISAEMSRQ 254
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BLAST of mRNA_H-canaliculatus_F_contig13928.3119.1 vs. uniprot
Match: A0A6H5KSY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSY5_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 7.030e-24
Identity = 61/87 (70.11%), Postives = 61/87 (70.11%), Query Frame = 1 
Query:    1 EFSAGHAKRVIESGVVLERKASITGAVLELKNKSQFSVEDATATISSGAISERTRKLKEEQEALRHKHATERQDTDLPFISAEMSRQ 261
            EFSAGHAKRVIESGVVLERKASITG V ELKNKSQ                      KEEQEALR KHATERQDTDLP ISAEMSRQ
Sbjct:  359 EFSAGHAKRVIESGVVLERKASITGVVPELKNKSQXXXXXXXXXXXXXXXXXXXXXXKEEQEALRQKHATERQDTDLPLISAEMSRQ 445
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13928.3119.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G4B7_ECTSI6.360e-2571.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KSY5_9PHAE7.030e-2470.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13928contigH-canaliculatus_F_contig13928:226..1456 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEDG-8 sphingosine 1-phosphate receptor
Ec32 orthologEc-02_002090.1
Exons2
Model size261
Cds size261
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929138.1433856-CDS-H-canaliculatus_F_contig13928:225..3871622929138.1433856-CDS-H-canaliculatus_F_contig13928:225..387Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13928 226..387 -
1696845691.770115-CDS-H-canaliculatus_F_contig13928:225..3871696845691.770115-CDS-H-canaliculatus_F_contig13928:225..387Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13928 226..387 -
1622929138.1587768-CDS-H-canaliculatus_F_contig13928:1357..14561622929138.1587768-CDS-H-canaliculatus_F_contig13928:1357..1456Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13928 1358..1456 -
1696845691.781718-CDS-H-canaliculatus_F_contig13928:1357..14561696845691.781718-CDS-H-canaliculatus_F_contig13928:1357..1456Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13928 1358..1456 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13928.3119.1prot_H-canaliculatus_F_contig13928.3119.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13928 226..1456 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13928.3119.1

>prot_H-canaliculatus_F_contig13928.3119.1 ID=prot_H-canaliculatus_F_contig13928.3119.1|Name=mRNA_H-canaliculatus_F_contig13928.3119.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=87bp
EFSAGHAKRVIESGVVLERKASITGAVLELKNKSQFSVEDATATISSGAI
SERTRKLKEEQEALRHKHATERQDTDLPFISAEMSRQ
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mRNA from alignment at H-canaliculatus_F_contig13928:226..1456-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13928.3119.1 ID=mRNA_H-canaliculatus_F_contig13928.3119.1|Name=mRNA_H-canaliculatus_F_contig13928.3119.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1231bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13928:226..1456- (Hapterophycus canaliculatus Oshoro5f female)
GAGTTCTCCGCGGGCCACGCGAAGCGGGTGATCGAGTCGGGAGTTGTGCT
GGAGAGGAAGGCGTCCATCACGGGGGCGGTGCTCGAGCTGAAGAACAAGG
TGGGGTGGTGTTGGCCGCGAGTGTAGGCGGGGTGTGTCTAGGCAGGCCGG
CGGGGAGGAGAGAGAGAGAGAGAGAGAGCGGCTGGCGTTGGGATGTGCAG
ATGGGCTTGACGGCGCCGAGAGGCGAGAGGAAGGACGGGCGAGCAAGCTT
CGATTTCGGGCGGGGCTCTGCGTGCGCCTCGACCGAAGGATGGATGGGTG
GAAGGACGAACAGGCGGACGAGAGATCTCGGAAGCTCTGGGTGGCCTTCC
GTTGACTCTGATCGAACACCGCTTGTGTTGCGGAAGGAAGAGACGACAAG
ACCGAAAGAAAAACCTTTCACGAAAAAGTCACCTTTCTGTGTTTGTCCAT
CCCCCATCCCACGTTTTTCACTTTAGTCCACAACTCTTCACGTTTTTGTC
CACAACTGGCCTACTGCTACATAGTTTCATCCTGTCACTCGAATGGAACC
CTCACTGAATGGAATAAACAAAAGCCTGGGATAGACAGTGTCTCAGGTGG
GTATTCCTTCGGTGTTCCTGACTTGTTTTTTAAAACCTTGCTAGCCGCGG
AGGCGTCTCGGAAGGCTTGTGTAGACACAGAAAATATTCAGTGCGGTGGA
TGGCGTGAAATATATCAGGAGAAATAGAAGGCCACGTGATTCGGTAGAAC
GTAATATGTGGTGGATGACTGAGTGACTGTGGTGAGAAGCGCTTGTCTGT
CCGATGGCGTCAGTTCTCCCGACCCCTCTTGAAGCTTGAAGCTGTGGTCG
ACGCTGTGGAAATTTGTCCCGCTGTGTGCGTCGTACCGTGTTGGAAGGCT
TTCGTACATTCCCTGCTGCTCCTCCCCGCTGTCGCCGCCGTCGCTCTCCG
ACAAGATCGACCGCTAACGACAGCCCTACCTTTTCGCCGTCCTCTGTGCC
GCTGCGGCAACTGCGGCCTCTGCTGCTGCTGCTATTGTTTCTTTTTTTAT
AATTCGTCGTGCTTTTCAGTCTCAGTTTTCGGTGGAGGACGCGACGGCGA
CGATTTCGTCCGGGGCCATCTCGGAGCGGACGCGCAAGCTGAAGGAGGAG
CAGGAGGCCCTGCGCCACAAACACGCAACAGAAAGGCAGGACACGGACCT
CCCGTTCATCTCCGCCGAGATGTCCCGCCAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13928:226..1456-

>mRNA_H-canaliculatus_F_contig13928.3119.1 ID=mRNA_H-canaliculatus_F_contig13928.3119.1|Name=mRNA_H-canaliculatus_F_contig13928.3119.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=522bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13928:226..1456- (Hapterophycus canaliculatus Oshoro5f female)
GAGTTCTCCGCGGGCCACGCGAAGCGGGTGATCGAGTCGGGAGTTGTGCT
GGAGAGGAAGGCGTCCATCACGGGGGCGGTGCTCGAGCTGAAGAACAAGG
AGTTCTCCGCGGGCCACGCGAAGCGGGTGATCGAGTCGGGAGTTGTGCTG
GAGAGGAAGGCGTCCATCACGGGGGCGGTGCTCGAGCTGAAGAACAAGTC
TCAGTTTTCGGTGGAGGACGCGACGGCGACGATTTCGTCCGGGGCCATCT
CGGAGCGGACGCGCAAGCTGAAGGAGGAGCAGGAGGCCCTGCGCCACAAA
CACGCAACAGAAAGGCAGGACACGGACCTCCCGTTCATCTCCGCCGAGAT
GTCCCGCCAGTCTCAGTTTTCGGTGGAGGACGCGACGGCGACGATTTCGT
CCGGGGCCATCTCGGAGCGGACGCGCAAGCTGAAGGAGGAGCAGGAGGCC
CTGCGCCACAAACACGCAACAGAAAGGCAGGACACGGACCTCCCGTTCAT
CTCCGCCGAGATGTCCCGCCAG
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