mRNA_H-canaliculatus_F_contig1392.3115.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig1392.3115.1 vs. uniprot
Match: D7G033_ECTSI (Ribosomal protein L35 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G033_ECTSI) HSP 1 Score: 111 bits (277), Expect = 6.590e-26 Identity = 53/61 (86.89%), Postives = 57/61 (93.44%), Query Frame = 2
Query: 2 QPVRLYVKGVMLGFKRGLRNTYHHTSLIKIQGVEDKEASDFYLGKRIAYIYKVRTTVSSTR 184
QPVRLYVKGVMLGFKRGLRNTYHHTSLIKIQGVEDKEAS+FYLGKRIAYIYK +T + T+
Sbjct: 52 QPVRLYVKGVMLGFKRGLRNTYHHTSLIKIQGVEDKEASNFYLGKRIAYIYKAKTLKNGTK 112
BLAST of mRNA_H-canaliculatus_F_contig1392.3115.1 vs. uniprot
Match: A0A836CIX4_9STRA (Ribosomal protein L35Ae-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIX4_9STRA) HSP 1 Score: 95.1 bits (235), Expect = 2.640e-20 Identity = 44/61 (72.13%), Postives = 54/61 (88.52%), Query Frame = 2
Query: 2 QPVRLYVKGVMLGFKRGLRNTYHHTSLIKIQGVEDKEASDFYLGKRIAYIYKVRTTVSSTR 184
QPVRLYVKGV+LG+KRGLRN Y+HTSLIKIQGVED A++FYLGKRIAYIYK + ++++
Sbjct: 16 QPVRLYVKGVVLGYKRGLRNQYNHTSLIKIQGVEDTAATEFYLGKRIAYIYKAKALKNNSK 76
BLAST of mRNA_H-canaliculatus_F_contig1392.3115.1 vs. uniprot
Match: A0A7S1XMC8_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XMC8_9STRA) HSP 1 Score: 91.3 bits (225), Expect = 7.200e-19 Identity = 43/55 (78.18%), Postives = 48/55 (87.27%), Query Frame = 2
Query: 2 QPVRLYVKGVMLGFKRGLRNTYHHTSLIKIQGVEDKEASDFYLGKRIAYIYKVRT 166
QPVRLY KGV+LG+KRGLRN +HTSLIKIQGVEDK+ + FYLGKRIAYIYK T
Sbjct: 16 QPVRLYTKGVVLGYKRGLRNQINHTSLIKIQGVEDKKETTFYLGKRIAYIYKAHT 70
BLAST of mRNA_H-canaliculatus_F_contig1392.3115.1 vs. uniprot
Match: A0A7S2SN13_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SN13_9STRA) HSP 1 Score: 90.9 bits (224), Expect = 9.450e-19 Identity = 43/61 (70.49%), Postives = 51/61 (83.61%), Query Frame = 2
Query: 2 QPVRLYVKGVMLGFKRGLRNTYHHTSLIKIQGVEDKEASDFYLGKRIAYIYKVRTTVSSTR 184
QPVRLYVKGV+LG+KRGLRN Y HTSLIKIQGV+D + DFYLGKR+AYIYK V+ ++
Sbjct: 15 QPVRLYVKGVVLGYKRGLRNQYCHTSLIKIQGVDDCKDVDFYLGKRVAYIYKASNKVNGSK 75
BLAST of mRNA_H-canaliculatus_F_contig1392.3115.1 vs. uniprot
Match: L1I611_GUITC (Large subunit ribosomal protein L35Ae, cytoplasmic n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1I611_GUITC) HSP 1 Score: 90.9 bits (224), Expect = 1.050e-18 Identity = 40/61 (65.57%), Postives = 51/61 (83.61%), Query Frame = 2
Query: 2 QPVRLYVKGVMLGFKRGLRNTYHHTSLIKIQGVEDKEASDFYLGKRIAYIYKVRTTVSSTR 184
QPVRLYVKG +LG++RGLRN Y HTSLIKI+GV DK+A++FYLGKR+ YIYK + + T+
Sbjct: 19 QPVRLYVKGAVLGYRRGLRNQYEHTSLIKIEGVRDKDATEFYLGKRVVYIYKGQKEIRGTK 79
BLAST of mRNA_H-canaliculatus_F_contig1392.3115.1 vs. uniprot
Match: A0A7R9U9P7_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U9P7_9STRA) HSP 1 Score: 90.5 bits (223), Expect = 1.110e-18 Identity = 41/55 (74.55%), Postives = 49/55 (89.09%), Query Frame = 2
Query: 2 QPVRLYVKGVMLGFKRGLRNTYHHTSLIKIQGVEDKEASDFYLGKRIAYIYKVRT 166
QPVRLYVKGV+LG+KRG RN Y+HTSL+KIQGV++K+ + FYLGKRIAYIYK T
Sbjct: 8 QPVRLYVKGVVLGYKRGQRNQYNHTSLVKIQGVDEKKETTFYLGKRIAYIYKAHT 62
BLAST of mRNA_H-canaliculatus_F_contig1392.3115.1 vs. uniprot
Match: K3W6U5_GLOUD (Uncharacterized protein n=2 Tax=Pythiaceae TaxID=4782 RepID=K3W6U5_GLOUD) HSP 1 Score: 89.7 bits (221), Expect = 2.020e-18 Identity = 41/61 (67.21%), Postives = 52/61 (85.25%), Query Frame = 2
Query: 2 QPVRLYVKGVMLGFKRGLRNTYHHTSLIKIQGVEDKEASDFYLGKRIAYIYKVRTTVSSTR 184
QP RLYVKGV +G+KRGLRN Y HTSLIKIQG++DK+ DFYLGK+IAYIYK +T ++++
Sbjct: 7 QPTRLYVKGVFVGYKRGLRNQYSHTSLIKIQGLQDKKDVDFYLGKKIAYIYKGKTLKNNSK 67
BLAST of mRNA_H-canaliculatus_F_contig1392.3115.1 vs. uniprot
Match: A0A7S1TVH1_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TVH1_9STRA) HSP 1 Score: 91.3 bits (225), Expect = 2.410e-18 Identity = 43/55 (78.18%), Postives = 48/55 (87.27%), Query Frame = 2
Query: 2 QPVRLYVKGVMLGFKRGLRNTYHHTSLIKIQGVEDKEASDFYLGKRIAYIYKVRT 166
QPVRLY KGV+LG+KRGLRN +HTSLIKIQGVEDK+ + FYLGKRIAYIYK T
Sbjct: 62 QPVRLYTKGVVLGYKRGLRNQINHTSLIKIQGVEDKKETTFYLGKRIAYIYKAHT 116
BLAST of mRNA_H-canaliculatus_F_contig1392.3115.1 vs. uniprot
Match: A0A7S3GR16_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GR16_9STRA) HSP 1 Score: 89.7 bits (221), Expect = 4.310e-18 Identity = 39/61 (63.93%), Postives = 49/61 (80.33%), Query Frame = 2
Query: 2 QPVRLYVKGVMLGFKRGLRNTYHHTSLIKIQGVEDKEASDFYLGKRIAYIYKVRTTVSSTR 184
QPVRLYVKG +LG+KRG NTYHHT+L+ + GV DKE S FYLGK+IAYIYK + V+ ++
Sbjct: 35 QPVRLYVKGTVLGYKRGFTNTYHHTALLSLDGVNDKEGSKFYLGKKIAYIYKAQKAVAGSK 95
BLAST of mRNA_H-canaliculatus_F_contig1392.3115.1 vs. uniprot
Match: A0A4D9CXD4_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CXD4_9STRA) HSP 1 Score: 88.2 bits (217), Expect = 7.660e-18 Identity = 40/61 (65.57%), Postives = 53/61 (86.89%), Query Frame = 2
Query: 2 QPVRLYVKGVMLGFKRGLRNTYHHTSLIKIQGVEDKEASDFYLGKRIAYIYKVRTTVSSTR 184
+PVRLYVKGV+LG+KRGLR +HTSLIKI G+++K++ DFYLGKRIAYIYK +T ++T+
Sbjct: 8 EPVRLYVKGVVLGYKRGLRQQTNHTSLIKIDGLDEKKSVDFYLGKRIAYIYKAKTLKNNTK 68 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1392.3115.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1392.3115.1 >prot_H-canaliculatus_F_contig1392.3115.1 ID=prot_H-canaliculatus_F_contig1392.3115.1|Name=mRNA_H-canaliculatus_F_contig1392.3115.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=120bp MLGFKRGLRNTYHHTSLIKIQGVEDKEASDFYLGKRIAYIYKVRTTVSSTback to top mRNA from alignment at H-canaliculatus_F_contig1392:20276..22027+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig1392.3115.1 ID=mRNA_H-canaliculatus_F_contig1392.3115.1|Name=mRNA_H-canaliculatus_F_contig1392.3115.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1752bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1392:20276..22027+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1392:20276..22027+ >mRNA_H-canaliculatus_F_contig1392.3115.1 ID=mRNA_H-canaliculatus_F_contig1392.3115.1|Name=mRNA_H-canaliculatus_F_contig1392.3115.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=720bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1392:20276..22027+ (Hapterophycus canaliculatus Oshoro5f female)back to top |