mRNA_H-canaliculatus_F_contig13912.3111.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13912.3111.1
Unique NamemRNA_H-canaliculatus_F_contig13912.3111.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13912.3111.1 vs. uniprot
Match: D8LST1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LST1_ECTSI)

HSP 1 Score: 185 bits (470), Expect = 2.080e-56
Identity = 95/106 (89.62%), Postives = 101/106 (95.28%), Query Frame = 1 
Query:    1 GNIDFDRCVATPEMMSLVGRAARILGPRGLMPNAKVGSVTRDVAAAVGAAKGGQAHFRAGKNGVVHMGIGKVSFERSDLIENVRATMVAISNLKPEVIKGKYISQV 318
            GNIDF+RCVATPEMMS+VGRAAR+LGPRGLMPNAK+GSVTRDV AAV AAKGGQA FRAGKNG +HMG+GKVSF RSDLIENVRATMVAISNLKPEVIKGKYISQV
Sbjct:  140 GNIDFERCVATPEMMSVVGRAARVLGPRGLMPNAKLGSVTRDVEAAVRAAKGGQAQFRAGKNGALHMGVGKVSFARSDLIENVRATMVAISNLKPEVIKGKYISQV 245
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BLAST of mRNA_H-canaliculatus_F_contig13912.3111.1 vs. uniprot
Match: A0A067C8G8_SAPPC (Ribosomal protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067C8G8_SAPPC)

HSP 1 Score: 145 bits (367), Expect = 2.260e-41
Identity = 71/103 (68.93%), Postives = 85/103 (82.52%), Query Frame = 1 
Query:    1 GNIDFDRCVATPEMMSLVGRAARILGPRGLMPNAKVGSVTRDVAAAVGAAKGGQAHFRAGKNGVVHMGIGKVSFERSDLIENVRATMVAISNLKPEVIKGKYI 309
            G +DFDRC+ATP+MM+LVGR AR+LGPRGLMPN K+G+VT+DV+AA+ AAKGGQ  FRA K G+VH G+GKVSF    LIEN+RA MVAI + KPE  KGKYI
Sbjct:  131 GKLDFDRCIATPDMMALVGRVARVLGPRGLMPNPKLGTVTQDVSAAISAAKGGQVEFRAEKKGIVHAGVGKVSFSDDALIENIRAFMVAIGDAKPEGAKGKYI 233
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BLAST of mRNA_H-canaliculatus_F_contig13912.3111.1 vs. uniprot
Match: A0A485K7N6_9STRA (Ribosomal protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K7N6_9STRA)

HSP 1 Score: 144 bits (364), Expect = 6.390e-41
Identity = 73/103 (70.87%), Postives = 83/103 (80.58%), Query Frame = 1 
Query:    1 GNIDFDRCVATPEMMSLVGRAARILGPRGLMPNAKVGSVTRDVAAAVGAAKGGQAHFRAGKNGVVHMGIGKVSFERSDLIENVRATMVAISNLKPEVIKGKYI 309
            G +DFDRCVATP+MM+LVGR AR+LGPRGLMPN K+G+VT DV AA+ AAKGGQ  FRA K GVVH G+GKVSF  + LIEN+RA MVAI   KPE  KGKYI
Sbjct:  130 GKLDFDRCVATPDMMALVGRVARVLGPRGLMPNPKLGTVTNDVTAAIQAAKGGQVEFRAEKKGVVHAGVGKVSFTDAALIENIRAFMVAIGEAKPEGAKGKYI 232
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BLAST of mRNA_H-canaliculatus_F_contig13912.3111.1 vs. uniprot
Match: A0A6G0WIL3_9STRA (Ribosomal protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WIL3_9STRA)

HSP 1 Score: 144 bits (364), Expect = 6.390e-41
Identity = 72/103 (69.90%), Postives = 82/103 (79.61%), Query Frame = 1 
Query:    1 GNIDFDRCVATPEMMSLVGRAARILGPRGLMPNAKVGSVTRDVAAAVGAAKGGQAHFRAGKNGVVHMGIGKVSFERSDLIENVRATMVAISNLKPEVIKGKYI 309
            G IDFDRCVATP+MM LVGR AR+LGPRGLMPN K+G+VT+DV AA+ AAKGGQ  FRA K G+VH G+GKVSF    L+EN+RA MVAI   KPE  KGKYI
Sbjct:  130 GKIDFDRCVATPDMMGLVGRVARVLGPRGLMPNPKLGTVTQDVTAAIQAAKGGQVEFRAEKKGIVHAGVGKVSFSDEALVENIRAFMVAIGEAKPEGAKGKYI 232
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BLAST of mRNA_H-canaliculatus_F_contig13912.3111.1 vs. uniprot
Match: A0A2D4BRJ5_PYTIN (Ribosomal protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BRJ5_PYTIN)

HSP 1 Score: 142 bits (358), Expect = 6.940e-40
Identity = 71/103 (68.93%), Postives = 83/103 (80.58%), Query Frame = 1 
Query:    1 GNIDFDRCVATPEMMSLVGRAARILGPRGLMPNAKVGSVTRDVAAAVGAAKGGQAHFRAGKNGVVHMGIGKVSFERSDLIENVRATMVAISNLKPEVIKGKYI 309
            G +DFDRC+ATP++M LVGR ARILGPRGLMPN K+G+VT+DVA A+ AAK GQ  FRA K G+VH GIGKVSF    L+EN+RA MVAIS+ KPE  KGKYI
Sbjct:  142 GQLDFDRCIATPDVMPLVGRVARILGPRGLMPNPKLGTVTQDVADAINAAKAGQVEFRAEKKGIVHAGIGKVSFSEEALLENIRAFMVAISDAKPEGAKGKYI 244
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BLAST of mRNA_H-canaliculatus_F_contig13912.3111.1 vs. uniprot
Match: A0A024UFR5_9STRA (Ribosomal protein n=4 Tax=Aphanomyces TaxID=100860 RepID=A0A024UFR5_9STRA)

HSP 1 Score: 142 bits (357), Expect = 7.610e-40
Identity = 69/103 (66.99%), Postives = 83/103 (80.58%), Query Frame = 1 
Query:    1 GNIDFDRCVATPEMMSLVGRAARILGPRGLMPNAKVGSVTRDVAAAVGAAKGGQAHFRAGKNGVVHMGIGKVSFERSDLIENVRATMVAISNLKPEVIKGKYI 309
            G +DFDRCVATP+MM+LVGR AR+LGPRGLMPN K+G+VT+DV AA+ AA+GGQ  FRA K G+VH G+GKVSF    L+EN+RA MVA+   KPE  KGKYI
Sbjct:  132 GKLDFDRCVATPDMMALVGRVARVLGPRGLMPNPKLGTVTQDVTAAIKAAQGGQVEFRAEKKGIVHAGVGKVSFSDEALLENIRAFMVAVGEAKPEGAKGKYI 234
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BLAST of mRNA_H-canaliculatus_F_contig13912.3111.1 vs. uniprot
Match: A0A7S2V3Z6_9STRA (Ribosomal protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V3Z6_9STRA)

HSP 1 Score: 136 bits (342), Expect = 4.060e-39
Identity = 68/106 (64.15%), Postives = 82/106 (77.36%), Query Frame = 1 
Query:    1 GNIDFDRCVATPEMMSLVGRAARILGPRGLMPNAKVGSVTRDVAAAVGAAKGGQAHFRAGKNGVVHMGIGKVSFERSDLIENVRATMVAISNLKPEVIKGKYISQV 318
            G +DFDRC+ATP  M +VG+ ARILGPRGLMPN KVG++  DV AAV +A  GQ  FRAGKNGV+H GIGK+SF+  D++EN+R  MVAIS+ KPE  KGKYI  V
Sbjct:    6 GAVDFDRCIATPAAMPVVGKIARILGPRGLMPNPKVGTIATDVKAAVKSALAGQVQFRAGKNGVLHAGIGKLSFDDQDILENIRTFMVAISDAKPEGAKGKYIKGV 111
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BLAST of mRNA_H-canaliculatus_F_contig13912.3111.1 vs. uniprot
Match: W4FM96_9STRA (Ribosomal protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FM96_9STRA)

HSP 1 Score: 139 bits (351), Expect = 5.920e-39
Identity = 67/103 (65.05%), Postives = 82/103 (79.61%), Query Frame = 1 
Query:    1 GNIDFDRCVATPEMMSLVGRAARILGPRGLMPNAKVGSVTRDVAAAVGAAKGGQAHFRAGKNGVVHMGIGKVSFERSDLIENVRATMVAISNLKPEVIKGKYI 309
            G +DFDRCVATP+MM+LVGR AR+LGPRGLMPN K+G+VT+DV AA+ AA GGQ  FRA K G+VH G+GKVSF    L++N+RA MVA+   KPE  KGKY+
Sbjct:  131 GKLDFDRCVATPDMMALVGRVARVLGPRGLMPNPKLGTVTQDVTAAITAAMGGQVEFRAEKKGIVHAGVGKVSFSDDALLDNIRAFMVAVGEAKPEGAKGKYV 233
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BLAST of mRNA_H-canaliculatus_F_contig13912.3111.1 vs. uniprot
Match: F0WQ50_9STRA (Ribosomal protein n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WQ50_9STRA)

HSP 1 Score: 139 bits (349), Expect = 6.700e-39
Identity = 67/103 (65.05%), Postives = 84/103 (81.55%), Query Frame = 1 
Query:    1 GNIDFDRCVATPEMMSLVGRAARILGPRGLMPNAKVGSVTRDVAAAVGAAKGGQAHFRAGKNGVVHMGIGKVSFERSDLIENVRATMVAISNLKPEVIKGKYI 309
            G ++FDRC+ATP+MMSLVGR ARILGPRGLMPN K+G++T DV +AV AAK GQ  +RA KNGV+H GIG+VSF    L+ N+R+ M+AIS+ KPE +KGKYI
Sbjct:  133 GKLEFDRCIATPDMMSLVGRVARILGPRGLMPNPKLGTLTLDVVSAVNAAKSGQVEYRAEKNGVIHAGIGRVSFTEDALLGNIRSFMLAISDAKPEALKGKYI 235
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BLAST of mRNA_H-canaliculatus_F_contig13912.3111.1 vs. uniprot
Match: A0A3R7KSH3_9STRA (Ribosomal protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7KSH3_9STRA)

HSP 1 Score: 139 bits (351), Expect = 8.000e-39
Identity = 67/103 (65.05%), Postives = 83/103 (80.58%), Query Frame = 1 
Query:    1 GNIDFDRCVATPEMMSLVGRAARILGPRGLMPNAKVGSVTRDVAAAVGAAKGGQAHFRAGKNGVVHMGIGKVSFERSDLIENVRATMVAISNLKPEVIKGKYI 309
            G +DFDRC+ATP++M+LVGR ARILGPRGLMPN K+G+VT +V  A+ AA+GGQ  FRA K G++H G+GKVSF    L+ENVRA MVA+S+ KPE  KGKYI
Sbjct:  143 GKLDFDRCIATPDVMALVGRVARILGPRGLMPNPKLGTVTMEVGEAIAAARGGQVEFRAEKKGIIHAGVGKVSFSEEALLENVRAFMVALSDAKPEGAKGKYI 245
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13912.3111.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LST1_ECTSI2.080e-5689.62Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A067C8G8_SAPPC2.260e-4168.93Ribosomal protein n=3 Tax=Saprolegniaceae TaxID=47... [more]
A0A485K7N6_9STRA6.390e-4170.87Ribosomal protein n=1 Tax=Aphanomyces stellatus Ta... [more]
A0A6G0WIL3_9STRA6.390e-4169.90Ribosomal protein n=1 Tax=Aphanomyces euteiches Ta... [more]
A0A2D4BRJ5_PYTIN6.940e-4068.93Ribosomal protein n=1 Tax=Pythium insidiosum TaxID... [more]
A0A024UFR5_9STRA7.610e-4066.99Ribosomal protein n=4 Tax=Aphanomyces TaxID=100860... [more]
A0A7S2V3Z6_9STRA4.060e-3964.15Ribosomal protein n=1 Tax=Fibrocapsa japonica TaxI... [more]
W4FM96_9STRA5.920e-3965.05Ribosomal protein n=3 Tax=Aphanomyces astaci TaxID... [more]
F0WQ50_9STRA6.700e-3965.05Ribosomal protein n=1 Tax=Albugo laibachii Nc14 Ta... [more]
A0A3R7KSH3_9STRA8.000e-3965.05Ribosomal protein n=3 Tax=Phytophthora kernoviae T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13912contigH-canaliculatus_F_contig13912:1696..2744 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score184.9
Seed ortholog evalue2e-44
Seed eggNOG ortholog2880.D8LST1
Preferred nameMRPL1
KEGG rclassRC00043,RC00070,RC00096,RC02896
KEGG koko:K01942,ko:K02863
KEGG ReactionR01074,R05145
KEGG Pathwayko00780,ko01100,ko03010,map00780,map01100,map03010
KEGG ModuleM00178,M00179
GOsGO:0000313,GO:0000315,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005761,GO:0005762,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0031974,GO:0032543,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0070013,GO:0071704,GO:0098798,GO:0140053,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0081@1,KOG1569@2759
Ec32 ortholog descriptionRibosomal protein L1/ribosomal biogenesis protein
Ec32 orthologEc-15_002720.1
EC6.3.4.10,6.3.4.11,6.3.4.15,6.3.4.9
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03011
Hectar predicted targeting categoryother localisation
Exons2
Model size318
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929136.8761299-CDS-H-canaliculatus_F_contig13912:1695..18001622929136.8761299-CDS-H-canaliculatus_F_contig13912:1695..1800Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13912 1696..1800 -
1696845691.3128245-CDS-H-canaliculatus_F_contig13912:1695..18001696845691.3128245-CDS-H-canaliculatus_F_contig13912:1695..1800Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13912 1696..1800 -
1622929136.8899996-CDS-H-canaliculatus_F_contig13912:2531..27441622929136.8899996-CDS-H-canaliculatus_F_contig13912:2531..2744Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13912 2532..2744 -
1696845691.3289409-CDS-H-canaliculatus_F_contig13912:2531..27441696845691.3289409-CDS-H-canaliculatus_F_contig13912:2531..2744Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13912 2532..2744 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13912.3111.1prot_H-canaliculatus_F_contig13912.3111.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13912 1696..2744 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13912.3111.1

>prot_H-canaliculatus_F_contig13912.3111.1 ID=prot_H-canaliculatus_F_contig13912.3111.1|Name=mRNA_H-canaliculatus_F_contig13912.3111.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=106bp
GNIDFDRCVATPEMMSLVGRAARILGPRGLMPNAKVGSVTRDVAAAVGAA
KGGQAHFRAGKNGVVHMGIGKVSFERSDLIENVRATMVAISNLKPEVIKG
KYISQV
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mRNA from alignment at H-canaliculatus_F_contig13912:1696..2744-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13912.3111.1 ID=mRNA_H-canaliculatus_F_contig13912.3111.1|Name=mRNA_H-canaliculatus_F_contig13912.3111.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1049bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13912:1696..2744- (Hapterophycus canaliculatus Oshoro5f female)
GGAAACATCGACTTCGACCGATGCGTGGCCACGCCGGAGATGATGTCCCT
CGTCGGCCGCGCCGCGAGGATCCTGGGCCCCCGGGGACTCATGCCGAACG
CCAAGGTGGGGAGCGTGACGAGAGACGTGGCTGCGGCGGTGGGGGCGGCC
AAGGGAGGCCAGGCGCACTTCCGCGCCGGGAAGAACGGCGTCGTGCACAT
GGGGATCGGGAAGGTGCGGCGGTGTGATGGGGGGGGGGGCACGCGGATGT
TGTTAATCTCACGCGTTCTGGTATCTCAGTGCCGCTGCTGCTGTGCTGTG
CTGTGCTGTGCTATGCTGTGCTGTGCGTTCTTCGCCGTTATGCGTTGTGC
AATGGGTGTGCTTGTTCCTGCGATTTGAGTCTGTTGCGTGCGCTTGTGTC
ATCCCTGGCAAGTAAGAACCGGGCTGTTACACGTGGCGGTAGGAAACGGG
AAGCATTATTTTCGTGTCTGATCTGCGTTGCGTCGTGTCACCTGTACGCC
TCGCGGCGCTTTGTGCGGTTCTAAGAGGCCGGACGGTAGTGCATGATTTT
GCGTTCGTGAGTGTCCGAAACACACACGTTTTTCACGCCCAACCGGCCCT
CGCCTTGCGTGGAGTCGAGCATGTGCTCTCGGCGTGCTCGCGCTCGCAAT
CGTTCGGTTATGAGAAACTTGCCTGGAGACCGTCGTTCCGAACGAGATGG
CTGTTGCCGCTTTTGACTTCATTGCTTCACACGCTTCGGCCTCGTGTTCC
GAAGAAAAGGCTCGCATGGTACAGTATGTTCACTTGGCCTGTGCGTGTGT
CCTTGTTGCTGCTTGTCCCTCCTTTTTGTCTCCGTACAACTTATTGTGGG
CGTAACCCCCCCATCTCGGTGAGCTCTTGAGAGGCCACACCCGATGCCAT
ACGCTTGGCTTCAATGTTTTTGTGTGTTTCTCCCGCGTCCTTAGGTGAGT
TTTGAGAGATCAGATCTGATCGAGAACGTTCGTGCGACCATGGTGGCAAT
CTCAAACCTCAAGCCCGAGGTAATCAAGGGGAAATACATTTCTCAGGTG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13912:1696..2744-

>mRNA_H-canaliculatus_F_contig13912.3111.1 ID=mRNA_H-canaliculatus_F_contig13912.3111.1|Name=mRNA_H-canaliculatus_F_contig13912.3111.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=636bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13912:1696..2744- (Hapterophycus canaliculatus Oshoro5f female)
GGAAACATCGACTTCGACCGATGCGTGGCCACGCCGGAGATGATGTCCCT
CGTCGGCCGCGCCGCGAGGATCCTGGGCCCCCGGGGACTCATGCCGAACG
CCAAGGTGGGGAGCGTGACGAGAGACGTGGCTGCGGCGGTGGGGGCGGCC
AAGGGAGGCCAGGCGCACTTCCGCGCCGGGAAGAACGGCGTCGTGCACAT
GGGGATCGGGAAGGGAAACATCGACTTCGACCGATGCGTGGCCACGCCGG
AGATGATGTCCCTCGTCGGCCGCGCCGCGAGGATCCTGGGCCCCCGGGGA
CTCATGCCGAACGCCAAGGTGGGGAGCGTGACGAGAGACGTGGCTGCGGC
GGTGGGGGCGGCCAAGGGAGGCCAGGCGCACTTCCGCGCCGGGAAGAACG
GCGTCGTGCACATGGGGATCGGGAAGGTGAGTTTTGAGAGATCAGATCTG
ATCGAGAACGTTCGTGCGACCATGGTGGCAATCTCAAACCTCAAGCCCGA
GGTAATCAAGGGGAAATACATTTCTCAGGTGGTGAGTTTTGAGAGATCAG
ATCTGATCGAGAACGTTCGTGCGACCATGGTGGCAATCTCAAACCTCAAG
CCCGAGGTAATCAAGGGGAAATACATTTCTCAGGTG
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