mRNA_H-canaliculatus_F_contig13898.3089.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13898.3089.1
Unique NamemRNA_H-canaliculatus_F_contig13898.3089.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13898.3089.1 vs. uniprot
Match: A0A6H5JFG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG9_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 1.270e-11
Identity = 78/173 (45.09%), Postives = 85/173 (49.13%), Query Frame = -2 
Query:    3 GGCEYFGNDASNEAGDG-AGGEATGGELMGENTCMAFFGGTGVELLVDPPLAPAGTGGAAPAGAGVGGERQKDGVKT---DVA--VRPSGPEQAGQTATAAPATPSVASGQKAAAKVSSSTL-------PLSRPSLPPPSESAAAXXXXXXXXXXXXPSPSGDSALMGEETCM 482
            GG E FG DASNE GD  A G+   G LMGE TCMA FGG GVELLVDP   P GTGGA      V G  ++ G KT   D A  V+ S P   G TAT  P         K A  +S   L       PL+ P L   S S A             P P+ DS LMGEETCM
Sbjct: 1125 GGFEDFGGDASNEVGDDEARGDKASGALMGEETCMALFGGNGVELLVDPSP-PGGTGGA------VAGVDERAGAKTAKPDAAGPVQSSPPLNGGMTAT--PXXXXXXXXXKPAGAISVGVLEKVKEVSPLTDPPLRR-STSTAVTAPARSAGAPASPPPA-DSTLMGEETCM 1286
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BLAST of mRNA_H-canaliculatus_F_contig13898.3089.1 vs. uniprot
Match: D7FI25_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI25_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 7.450e-11
Identity = 80/159 (50.31%), Postives = 87/159 (54.72%), Query Frame = -2 
Query:    3 FGNDASNEAGDG-AGGEATGGELMGENTCMAFFGGTGVELLVDPPLAPAGTGGAAPAGAGVGGERQKDGVKTDVA--VRPSGPEQAGQTATAAPAT-PSVASGQKAAAKVSSSTLPLSRPSLPPPSESAAAXXXXXXXXXXXXPSPSGDSALMGEETCM 467
            FG DAS EAGD  A G+   G LMGE TCMA FGG GVELLVDP   P GTGGA    AGV      +  K D A  V+ S P   G  AT A AT P+ A+      KV   + PL+   LP P      XXXXXXXX      P  DS LMGEETCM
Sbjct:  869 FGGDASGEAGDDEARGDKASGALMGEETCMALFGGNGVELLVDPSP-PGGTGGAV---AGVDERTGANAAKPDAAGPVQSSPPLTGGTAATPAAATKPAGATSVGVLEKVKEGS-PLA--DLPLPRXXXXXXXXXXXXXGAPASPPPADSTLMGEETCM 1020
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13898.3089.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JFG9_9PHAE1.270e-1145.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FI25_ECTSI7.450e-1150.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13898contigH-canaliculatus_F_contig13898:58..714 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size657
Cds size492
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13898.3089.1prot_H-canaliculatus_F_contig13898.3089.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13898 61..552 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929132.9200962-UTR-H-canaliculatus_F_contig13898:57..601622929132.9200962-UTR-H-canaliculatus_F_contig13898:57..60Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13898 58..60 +
1696845689.7636127-UTR-H-canaliculatus_F_contig13898:57..601696845689.7636127-UTR-H-canaliculatus_F_contig13898:57..60Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13898 58..60 +
1622929132.9614775-UTR-H-canaliculatus_F_contig13898:552..7141622929132.9614775-UTR-H-canaliculatus_F_contig13898:552..714Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13898 553..714 +
1696845689.784382-UTR-H-canaliculatus_F_contig13898:552..7141696845689.784382-UTR-H-canaliculatus_F_contig13898:552..714Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13898 553..714 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929132.9418547-CDS-H-canaliculatus_F_contig13898:60..5521622929132.9418547-CDS-H-canaliculatus_F_contig13898:60..552Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13898 61..552 +
1696845689.7760158-CDS-H-canaliculatus_F_contig13898:60..5521696845689.7760158-CDS-H-canaliculatus_F_contig13898:60..552Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13898 61..552 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13898.3089.1

>prot_H-canaliculatus_F_contig13898.3089.1 ID=prot_H-canaliculatus_F_contig13898.3089.1|Name=mRNA_H-canaliculatus_F_contig13898.3089.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=164bp
MHVSSPISALSPEGDGDAGGAAGSPTGTAAALSLGGGKEGRERGNVEEET
FAAAFCPLATEGVAGAAVAVWPACSGPDGRTATSVLTPSFCLSPPTPAPA
GAAPPVPAGASGGSTSSSTPVPPKKAMQVFSPISSPPVASPPAPSPASLL
ASFPKYSQPPASS*
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mRNA from alignment at H-canaliculatus_F_contig13898:58..714+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13898.3089.1 ID=mRNA_H-canaliculatus_F_contig13898.3089.1|Name=mRNA_H-canaliculatus_F_contig13898.3089.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=657bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13898:58..714+ (Hapterophycus canaliculatus Oshoro5f female)
GCCATGCACGTTTCCTCCCCCATCAGCGCGCTGTCGCCTGAGGGGGACGG
CGACGCCGGCGGCGCGGCGGGCTCGCCCACCGGCACAGCCGCAGCACTCT
CGCTCGGGGGGGGCAAGGAGGGCCGAGAAAGGGGCAACGTCGAGGAGGAA
ACCTTCGCGGCCGCCTTCTGTCCGCTCGCCACCGAAGGCGTCGCGGGCGC
TGCGGTCGCCGTTTGGCCCGCCTGCTCCGGCCCGGATGGCCGAACGGCCA
CATCCGTCTTGACCCCGTCTTTTTGTCTCTCTCCTCCGACTCCCGCCCCC
GCCGGCGCGGCCCCCCCCGTTCCCGCCGGTGCTAGTGGCGGGTCCACGAG
CAGCTCGACTCCGGTCCCACCAAAGAAAGCCATGCAAGTGTTTTCTCCCA
TCAGCTCACCGCCCGTCGCCTCCCCGCCTGCCCCGTCTCCAGCTTCGTTG
CTAGCGTCGTTTCCGAAGTACTCGCAACCACCGGCGTCGTCTTGATCATC
CTCCGAGCTGCCGCATCGAGACTCGCCCTCCTTCTCCTCAGACTGCTTCA
CCGCCGGCGCCGGCGATGATGACGCTCCGGCCGACGTCCCCGCTGCCGGC
GCATTCGGCGCTGTCGGCGCGGCCGGCGCTGCCACCGCCCCCATGCCGCC
CGCAGCC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13898:58..714+

>mRNA_H-canaliculatus_F_contig13898.3089.1 ID=mRNA_H-canaliculatus_F_contig13898.3089.1|Name=mRNA_H-canaliculatus_F_contig13898.3089.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=984bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13898:58..714+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCACGTTTCCTCCCCCATCAGCGCGCTGTCGCCTGAGGGGGACGGCGA
CGCCGGCGGCGCGGCGGGCTCGCCCACCGGCACAGCCGCAGCACTCTCGC
TCGGGGGGGGCAAGGAGGGCCGAGAAAGGGGCAACGTCGAGGAGGAAACC
TTCGCGGCCGCCTTCTGTCCGCTCGCCACCGAAGGCGTCGCGGGCGCTGC
GGTCGCCGTTTGGCCCGCCTGCTCCGGCCCGGATGGCCGAACGGCCACAT
CCGTCTTGACCCCGTCTTTTTGTCTCTCTCCTCCGACTCCCGCCCCCGCC
GGCGCGGCCCCCCCCGTTCCCGCCGGTGCTAGTGGCGGGTCCACGAGCAG
CTCGACTCCGGTCCCACCAAAGAAAGCCATGCAAGTGTTTTCTCCCATCA
GCTCACCGCCCGTCGCCTCCCCGCCTGCCCCGTCTCCAGCTTCGTTGCTA
GCGTCGTTTCCGAAGTACTCGCAACCACCGGCGTCGTCTTGAATGCACGT
TTCCTCCCCCATCAGCGCGCTGTCGCCTGAGGGGGACGGCGACGCCGGCG
GCGCGGCGGGCTCGCCCACCGGCACAGCCGCAGCACTCTCGCTCGGGGGG
GGCAAGGAGGGCCGAGAAAGGGGCAACGTCGAGGAGGAAACCTTCGCGGC
CGCCTTCTGTCCGCTCGCCACCGAAGGCGTCGCGGGCGCTGCGGTCGCCG
TTTGGCCCGCCTGCTCCGGCCCGGATGGCCGAACGGCCACATCCGTCTTG
ACCCCGTCTTTTTGTCTCTCTCCTCCGACTCCCGCCCCCGCCGGCGCGGC
CCCCCCCGTTCCCGCCGGTGCTAGTGGCGGGTCCACGAGCAGCTCGACTC
CGGTCCCACCAAAGAAAGCCATGCAAGTGTTTTCTCCCATCAGCTCACCG
CCCGTCGCCTCCCCGCCTGCCCCGTCTCCAGCTTCGTTGCTAGCGTCGTT
TCCGAAGTACTCGCAACCACCGGCGTCGTCTTGA
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