mRNA_H-canaliculatus_F_contig13856.3061.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13856.3061.1
Unique NamemRNA_H-canaliculatus_F_contig13856.3061.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13856.3061.1 vs. uniprot
Match: A0A0R3RDH7_9BILA (Uncharacterized protein n=1 Tax=Brugia timori TaxID=42155 RepID=A0A0R3RDH7_9BILA)

HSP 1 Score: 142 bits (357), Expect = 5.200e-41
Identity = 72/94 (76.60%), Postives = 77/94 (81.91%), Query Frame = 1 
Query:    1 WRQRGHGYTIRAGRNLPDKEFRYLRTVIVTAAVSHLAGAWYLRPASA*EASPITITGVPSPEVTAPFCLVPSPEFSQAPWYSLPDHLCRFRVRF 282
            WRQR H Y IRAGRNLPDKEFRYLRTVIVTAAV   A AW+LR  +A  ASPIT++ VPSPEVT PFCLVPS EFSQA W + PDHLCRFRVRF
Sbjct:   90 WRQRRHHYAIRAGRNLPDKEFRYLRTVIVTAAVXR-AAAWFLRLPTAQGASPITVSSVPSPEVTVPFCLVPSAEFSQALWSTRPDHLCRFRVRF 182
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BLAST of mRNA_H-canaliculatus_F_contig13856.3061.1 vs. uniprot
Match: A0A367MBJ7_PSEAI (Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa TaxID=287 RepID=A0A367MBJ7_PSEAI)

HSP 1 Score: 82.8 bits (203), Expect = 4.180e-19
Identity = 36/41 (87.80%), Postives = 37/41 (90.24%), Query Frame = 1 
Query:  160 TITGVPSPEVTAPFCLVPSPEFSQAPWYSLPDHLCRFRVRF 282
            T+ G PSPEVT PFCLVPSPEFSQAPWYSLPDHLCRF VRF
Sbjct:   21 TLAGAPSPEVTVPFCLVPSPEFSQAPWYSLPDHLCRFGVRF 61
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BLAST of mRNA_H-canaliculatus_F_contig13856.3061.1 vs. uniprot
Match: A0A090V8U1_PSEVU (Uncharacterized protein n=2 Tax=Enterobacterales TaxID=91347 RepID=A0A090V8U1_PSEVU)

HSP 1 Score: 82.8 bits (203), Expect = 4.640e-19
Identity = 37/39 (94.87%), Postives = 37/39 (94.87%), Query Frame = 1 
Query:  166 TGVPSPEVTAPFCLVPSPEFSQAPWYSLPDHLCRFRVRF 282
            T VPSPEVTAPFCLVPSPEFSQAPWYSLPDHLCRF VRF
Sbjct:   27 TSVPSPEVTAPFCLVPSPEFSQAPWYSLPDHLCRFGVRF 65
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BLAST of mRNA_H-canaliculatus_F_contig13856.3061.1 vs. uniprot
Match: A0A446ANV5_9PSED (Transposase n=81 Tax=Pseudomonas TaxID=286 RepID=A0A446ANV5_9PSED)

HSP 1 Score: 82.8 bits (203), Expect = 5.010e-19
Identity = 36/41 (87.80%), Postives = 38/41 (92.68%), Query Frame = 1 
Query:  160 TITGVPSPEVTAPFCLVPSPEFSQAPWYSLPDHLCRFRVRF 282
            T+TG PSPEVT PFCLVPSPEFSQAPWYSLP+HLCRF VRF
Sbjct:   28 TLTGAPSPEVTVPFCLVPSPEFSQAPWYSLPNHLCRFGVRF 68
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BLAST of mRNA_H-canaliculatus_F_contig13856.3061.1 vs. uniprot
Match: C2ERT0_9LACO (Uncharacterized protein n=1 Tax=Limosilactobacillus vaginalis DSM 5837 = ATCC 49540 TaxID=1423814 RepID=C2ERT0_9LACO)

HSP 1 Score: 80.9 bits (198), Expect = 2.290e-18
Identity = 36/37 (97.30%), Postives = 36/37 (97.30%), Query Frame = 1 
Query:  172 VPSPEVTAPFCLVPSPEFSQAPWYSLPDHLCRFRVRF 282
            VPSPEVTAPFCLVPSPEFSQAPWYSLPDHLCRF VRF
Sbjct:   23 VPSPEVTAPFCLVPSPEFSQAPWYSLPDHLCRFGVRF 59
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BLAST of mRNA_H-canaliculatus_F_contig13856.3061.1 vs. uniprot
Match: D4BEM5_9ENTR (Uncharacterized protein n=2 Tax=Citrobacter TaxID=544 RepID=D4BEM5_9ENTR)

HSP 1 Score: 80.9 bits (198), Expect = 2.670e-18
Identity = 36/37 (97.30%), Postives = 36/37 (97.30%), Query Frame = 1 
Query:  172 VPSPEVTAPFCLVPSPEFSQAPWYSLPDHLCRFRVRF 282
            VPSPEVTAPFCLVPSPEFSQAPWYSLPDHLCRF VRF
Sbjct:   29 VPSPEVTAPFCLVPSPEFSQAPWYSLPDHLCRFGVRF 65
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BLAST of mRNA_H-canaliculatus_F_contig13856.3061.1 vs. uniprot
Match: UPI001CA54061 (hypothetical protein n=1 Tax=Vibrio vulnificus TaxID=672 RepID=UPI001CA54061)

HSP 1 Score: 69.7 bits (169), Expect = 6.190e-14
Identity = 37/58 (63.79%), Postives = 40/58 (68.97%), Query Frame = 1 
Query:  106 LAGAWYLRPASA*EASPITITGVPSPEVTAPFCLVPSPEFSQAPWYSLPDHLCRFRVR 279
            +A +  LR AS+  A   TI  VPSPEVT PFCLVPSPEFSQAPWYSLP   CR   R
Sbjct:    1 MAASGVLRRASSPSAMDFTIKSVPSPEVTVPFCLVPSPEFSQAPWYSLP---CRLSCR 55
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BLAST of mRNA_H-canaliculatus_F_contig13856.3061.1 vs. uniprot
Match: A0A1Y1JUJ1_PHOPY (Uncharacterized protein (Fragment) n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1JUJ1_PHOPY)

HSP 1 Score: 71.2 bits (173), Expect = 7.170e-14
Identity = 33/38 (86.84%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:  169 GVPSPEVTAPFCLVPSPEFSQAPWYSLPDHLCRFRVRF 282
            G PSPEVT  FCLVPSPEFSQAP YSLPDHLCRF VRF
Sbjct:   68 GAPSPEVTVLFCLVPSPEFSQAPEYSLPDHLCRFSVRF 105
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BLAST of mRNA_H-canaliculatus_F_contig13856.3061.1 vs. uniprot
Match: Q1R3T7_ECOUT (Uncharacterized protein n=2 Tax=Escherichia coli (strain UTI89 / UPEC) TaxID=364106 RepID=Q1R3T7_ECOUT)

HSP 1 Score: 63.9 bits (154), Expect = 1.750e-11
Identity = 30/33 (90.91%), Postives = 30/33 (90.91%), Query Frame = 1 
Query:    1 WRQRGHGYTIRAGRNLPDKEFRYLRTVIVTAAV 99
            WRQ GH Y IRAGRNLPDKEFRYLRTVIVTAAV
Sbjct:   32 WRQPGHHYAIRAGRNLPDKEFRYLRTVIVTAAV 64
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BLAST of mRNA_H-canaliculatus_F_contig13856.3061.1 vs. uniprot
Match: A0A090VZ51_PSEVU (Uncharacterized protein n=4 Tax=Enterobacteriaceae TaxID=543 RepID=A0A090VZ51_PSEVU)

HSP 1 Score: 63.9 bits (154), Expect = 3.160e-11
Identity = 30/33 (90.91%), Postives = 30/33 (90.91%), Query Frame = 1 
Query:    1 WRQRGHGYTIRAGRNLPDKEFRYLRTVIVTAAV 99
            WRQ GH Y IRAGRNLPDKEFRYLRTVIVTAAV
Sbjct:   56 WRQPGHHYAIRAGRNLPDKEFRYLRTVIVTAAV 88
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13856.3061.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0R3RDH7_9BILA5.200e-4176.60Uncharacterized protein n=1 Tax=Brugia timori TaxI... [more]
A0A367MBJ7_PSEAI4.180e-1987.80Uncharacterized protein n=1 Tax=Pseudomonas aerugi... [more]
A0A090V8U1_PSEVU4.640e-1994.87Uncharacterized protein n=2 Tax=Enterobacterales T... [more]
A0A446ANV5_9PSED5.010e-1987.80Transposase n=81 Tax=Pseudomonas TaxID=286 RepID=A... [more]
C2ERT0_9LACO2.290e-1897.30Uncharacterized protein n=1 Tax=Limosilactobacillu... [more]
D4BEM5_9ENTR2.670e-1897.30Uncharacterized protein n=2 Tax=Citrobacter TaxID=... [more]
UPI001CA540616.190e-1463.79hypothetical protein n=1 Tax=Vibrio vulnificus Tax... [more]
A0A1Y1JUJ1_PHOPY7.170e-1486.84Uncharacterized protein (Fragment) n=1 Tax=Photinu... [more]
Q1R3T7_ECOUT1.750e-1190.91Uncharacterized protein n=2 Tax=Escherichia coli (... [more]
A0A090VZ51_PSEVU3.160e-1190.91Uncharacterized protein n=4 Tax=Enterobacteriaceae... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13856contigH-canaliculatus_F_contig13856:2535..2935 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score64.7
Seed ortholog evalue1.3e-08
Seed eggNOG ortholog1115515.EV102420_46_00003
EggNOG free text desc.COG NOG15344 non supervised orthologous group
EggNOG OGs1MZ6J@1224,1S8U2@1236,2B9ZZ@1,323DM@2
COG Functional cat.S
Best tax levelGammaproteobacteria
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal anchor
Exons3
Model size282
Cds size144
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13856.3061.1prot_H-canaliculatus_F_contig13856.3061.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13856 2673..2935 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929127.2242894-UTR-H-canaliculatus_F_contig13856:2534..26721622929127.2242894-UTR-H-canaliculatus_F_contig13856:2534..2672Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13856 2535..2672 -
1696845688.6140826-UTR-H-canaliculatus_F_contig13856:2534..26721696845688.6140826-UTR-H-canaliculatus_F_contig13856:2534..2672Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13856 2535..2672 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929127.290552-CDS-H-canaliculatus_F_contig13856:2672..27101622929127.290552-CDS-H-canaliculatus_F_contig13856:2672..2710Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13856 2673..2710 -
1696845688.6296825-CDS-H-canaliculatus_F_contig13856:2672..27101696845688.6296825-CDS-H-canaliculatus_F_contig13856:2672..2710Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13856 2673..2710 -
1622929127.3132896-CDS-H-canaliculatus_F_contig13856:2759..27691622929127.3132896-CDS-H-canaliculatus_F_contig13856:2759..2769Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13856 2760..2769 -
1696845688.6436546-CDS-H-canaliculatus_F_contig13856:2759..27691696845688.6436546-CDS-H-canaliculatus_F_contig13856:2759..2769Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13856 2760..2769 -
1622929127.3319995-CDS-H-canaliculatus_F_contig13856:2839..29351622929127.3319995-CDS-H-canaliculatus_F_contig13856:2839..2935Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13856 2840..2935 -
1696845688.6594365-CDS-H-canaliculatus_F_contig13856:2839..29351696845688.6594365-CDS-H-canaliculatus_F_contig13856:2839..2935Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13856 2840..2935 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13856.3061.1

>prot_H-canaliculatus_F_contig13856.3061.1 ID=prot_H-canaliculatus_F_contig13856.3061.1|Name=mRNA_H-canaliculatus_F_contig13856.3061.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=48bp
WRQRGHGYTIRAGRNLPDKEFRYLRTVIVTAAVSHLAGAWYLRPASA*
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mRNA from alignment at H-canaliculatus_F_contig13856:2535..2935-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13856.3061.1 ID=mRNA_H-canaliculatus_F_contig13856.3061.1|Name=mRNA_H-canaliculatus_F_contig13856.3061.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=401bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13856:2535..2935- (Hapterophycus canaliculatus Oshoro5f female)
TGGAGACAGCGTGGCCATGGTTACACCATTCGTGCAGGTCGGAACTTACC
CGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTT
ACCGGGGCTTCGATCAAGAGCTTCGCTTACGCTAACCCCATCAATTAACC
TTCCGGCACCGGGCAGGTGTCACACCGTATACGTCCACTTTCGTGTTTGC
AGAGTACTGTGTTTTAAGTAAACAGTCGCAGGGGCCTGGTATCTTCGACC
GGCATCAGCTTAGGAAGCAAGTCCCATCACCATCACCGGCGTGCCTTCTC
CCGAAGTTACGGCACCATTTTGCCTAGTTCCTTCACCCGAGTTCTCTCAA
GCGCCTTGGTATTCTCTACCTGATCACCTGTGTCGGTTTAGAGTACGGTT
C
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13856:2535..2935-

>mRNA_H-canaliculatus_F_contig13856.3061.1 ID=mRNA_H-canaliculatus_F_contig13856.3061.1|Name=mRNA_H-canaliculatus_F_contig13856.3061.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=288bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13856:2535..2935- (Hapterophycus canaliculatus Oshoro5f female)
TGGAGACAGCGTGGCCATGGTTACACCATTCGTGCAGGTCGGAACTTACC
CGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCTGGA
GACAGCGTGGCCATGGTTACACCATTCGTGCAGGTCGGAACTTACCCGAC
AAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTGTCACA
CCGTGTCACACCTCGCAGGGGCCTGGTATCTTCGACCGGCATCAGCTTAG
TCGCAGGGGCCTGGTATCTTCGACCGGCATCAGCTTAG
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