mRNA_H-canaliculatus_F_contig13822.3038.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13822.3038.1
Unique NamemRNA_H-canaliculatus_F_contig13822.3038.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13822.3038.1 vs. uniprot
Match: D8LD91_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD91_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 1.050e-13
Identity = 36/48 (75.00%), Postives = 42/48 (87.50%), Query Frame = 1 
Query:    1 QGGLVPGHVLIIPVSHQQRYSDLSEEGAKEAERFKQSFSRYRETLSAG 144
            +GGLVPGHVLI+PVSHQQRYS+LS EGAKEAE++K+SF RY   LS G
Sbjct:  285 KGGLVPGHVLIVPVSHQQRYSELSAEGAKEAEQYKESFKRY--CLSCG 330
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BLAST of mRNA_H-canaliculatus_F_contig13822.3038.1 vs. uniprot
Match: A0A836CFA8_9STRA (CwfJ C-terminus 1-domain-containing protein-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFA8_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 5.930e-6
Identity = 23/41 (56.10%), Postives = 30/41 (73.17%), Query Frame = 1 
Query:    1 QGGLVPGHVLIIPVSHQQRYSDLSEEGAKEAERFKQSFSRY 123
            +GGLVP HVLI+P++H QRYS+LS+   KE E FK +   Y
Sbjct:  634 KGGLVPDHVLIVPIAHIQRYSELSDACVKEVEAFKAALKAY 674
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BLAST of mRNA_H-canaliculatus_F_contig13822.3038.1 vs. uniprot
Match: A0A7R9FNI5_9NEOP (Hypothetical protein n=1 Tax=Timema tahoe TaxID=61484 RepID=A0A7R9FNI5_9NEOP)

HSP 1 Score: 47.8 bits (112), Expect = 9.850e-5
Identity = 22/44 (50.00%), Postives = 32/44 (72.73%), Query Frame = 1 
Query:    1 QGGLVPGHVLIIPVSHQQRYSDLSEEGAKEAERFKQSFSRYRET 132
            +GGLVP H+LI+PV+H Q  SD+ E  AKE ++FK +  +Y +T
Sbjct:  347 KGGLVPEHLLILPVTHHQSLSDVPEAVAKEIKKFKSALKKYFKT 390
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13822.3038.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LD91_ECTSI1.050e-1375.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CFA8_9STRA5.930e-656.10CwfJ C-terminus 1-domain-containing protein-like p... [more]
A0A7R9FNI5_9NEOP9.850e-550.00Hypothetical protein n=1 Tax=Timema tahoe TaxID=61... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13822contigH-canaliculatus_F_contig13822:1661..1837 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.2
Seed ortholog evalue4.7e-11
Seed eggNOG ortholog2880.D8LD91
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.DNA binding
EggNOG OGsKOG2476@1,KOG2476@2759
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size177
Cds size177
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929123.8554006-CDS-H-canaliculatus_F_contig13822:1660..18371622929123.8554006-CDS-H-canaliculatus_F_contig13822:1660..1837Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13822 1661..1837 -
1696845687.4154582-CDS-H-canaliculatus_F_contig13822:1660..18371696845687.4154582-CDS-H-canaliculatus_F_contig13822:1660..1837Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13822 1661..1837 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13822.3038.1prot_H-canaliculatus_F_contig13822.3038.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13822 1661..1837 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13822.3038.1

>prot_H-canaliculatus_F_contig13822.3038.1 ID=prot_H-canaliculatus_F_contig13822.3038.1|Name=mRNA_H-canaliculatus_F_contig13822.3038.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=59bp
QGGLVPGHVLIIPVSHQQRYSDLSEEGAKEAERFKQSFSRYRETLSAGRT
RTLKLARR*
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mRNA from alignment at H-canaliculatus_F_contig13822:1661..1837-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13822.3038.1 ID=mRNA_H-canaliculatus_F_contig13822.3038.1|Name=mRNA_H-canaliculatus_F_contig13822.3038.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=177bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13822:1661..1837- (Hapterophycus canaliculatus Oshoro5f female)
CAGGGCGGGTTAGTACCGGGGCACGTGCTGATCATTCCGGTGTCGCATCA
GCAACGGTACAGCGATCTCAGCGAGGAAGGGGCGAAGGAAGCCGAGCGAT
TCAAACAATCCTTCAGCAGGTACAGAGAAACCCTTTCAGCAGGTAGAACG
AGAACCCTTAAGCTGGCACGTAGATAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13822:1661..1837-

>mRNA_H-canaliculatus_F_contig13822.3038.1 ID=mRNA_H-canaliculatus_F_contig13822.3038.1|Name=mRNA_H-canaliculatus_F_contig13822.3038.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=354bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13822:1661..1837- (Hapterophycus canaliculatus Oshoro5f female)
CAGGGCGGGTTAGTACCGGGGCACGTGCTGATCATTCCGGTGTCGCATCA
GCAACGGTACAGCGATCTCAGCGAGGAAGGGGCGAAGGAAGCCGAGCGAT
TCAAACAATCCTTCAGCAGGTACAGAGAAACCCTTTCAGCAGGTAGAACG
AGAACCCTTAAGCTGGCACGTAGATAGCAGGGCGGGTTAGTACCGGGGCA
CGTGCTGATCATTCCGGTGTCGCATCAGCAACGGTACAGCGATCTCAGCG
AGGAAGGGGCGAAGGAAGCCGAGCGATTCAAACAATCCTTCAGCAGGTAC
AGAGAAACCCTTTCAGCAGGTAGAACGAGAACCCTTAAGCTGGCACGTAG
ATAG
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