mRNA_H-canaliculatus_F_contig13723.2981.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13723.2981.1
Unique NamemRNA_H-canaliculatus_F_contig13723.2981.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13723.2981.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13723contigH-canaliculatus_F_contig13723:889..1908 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1011
Cds size612
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13723.2981.1prot_H-canaliculatus_F_contig13723.2981.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13723 1061..1672 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929113.4163094-UTR-H-canaliculatus_F_contig13723:888..10601622929113.4163094-UTR-H-canaliculatus_F_contig13723:888..1060Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13723 889..1060 +
1696845683.7532191-UTR-H-canaliculatus_F_contig13723:888..10601696845683.7532191-UTR-H-canaliculatus_F_contig13723:888..1060Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13723 889..1060 +
1622929113.45999-UTR-H-canaliculatus_F_contig13723:1672..17161622929113.45999-UTR-H-canaliculatus_F_contig13723:1672..1716Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13723 1673..1716 +
1696845683.7777522-UTR-H-canaliculatus_F_contig13723:1672..17161696845683.7777522-UTR-H-canaliculatus_F_contig13723:1672..1716Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13723 1673..1716 +
1622929113.4787414-UTR-H-canaliculatus_F_contig13723:1725..19081622929113.4787414-UTR-H-canaliculatus_F_contig13723:1725..1908Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13723 1726..1908 +
1696845683.7890747-UTR-H-canaliculatus_F_contig13723:1725..19081696845683.7890747-UTR-H-canaliculatus_F_contig13723:1725..1908Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13723 1726..1908 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929113.4353335-CDS-H-canaliculatus_F_contig13723:1060..16721622929113.4353335-CDS-H-canaliculatus_F_contig13723:1060..1672Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13723 1061..1672 +
1696845683.7628808-CDS-H-canaliculatus_F_contig13723:1060..16721696845683.7628808-CDS-H-canaliculatus_F_contig13723:1060..1672Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13723 1061..1672 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13723.2981.1

>prot_H-canaliculatus_F_contig13723.2981.1 ID=prot_H-canaliculatus_F_contig13723.2981.1|Name=mRNA_H-canaliculatus_F_contig13723.2981.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=204bp
MRATEVAPSQYHPERLKLGVDMPTSTTCQLSSPLSAAGRAKLSRYDRADS
WLWFGVLGVLGHAPASVQGPNECGRRETHRAYIDARCSPPFLHAVNNRAP
CKPPHKVPTGGWRVFEIEAKPKPDNGPHQLRLTANGLGRRHQGYMAANRQ
ADECNYGGTDSYSSGIMKPTTCSNNRCRGISLAGRSKTCPASAILHHHLH
LQQ*
back to top

mRNA from alignment at H-canaliculatus_F_contig13723:889..1908+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13723.2981.1 ID=mRNA_H-canaliculatus_F_contig13723.2981.1|Name=mRNA_H-canaliculatus_F_contig13723.2981.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1020bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13723:889..1908+ (Hapterophycus canaliculatus Oshoro5f female)
GTCTCACACTGGCCGCTGGAGATGGGCAGGGGCAACAAGCAAGGGCAACG
AGACGCTGCTTCCCTGCCGCCGCCCCCGCCACGATGTAGCGTGCGCGTGC
CGGTATACACTACACCACCGGTGAACTAGCCGAGCTTGTGATGTCGCACT
CATCATTGCGGAACTGAAGTATATGCGAGCAACCGAGGTCGCCCCTTCGC
AGTATCACCCCGAGAGGCTCAAGCTCGGTGTGGACATGCCGACGAGCACA
ACATGCCAGCTCTCTTCTCCCCTTTCCGCCGCGGGTCGTGCAAAGCTCTC
GCGCTACGACAGAGCCGACTCCTGGCTTTGGTTCGGGGTACTTGGAGTGC
TTGGCCATGCCCCCGCCAGCGTGCAAGGGCCCAATGAATGCGGAAGAAGG
GAAACACATAGGGCTTATATAGACGCGCGTTGCTCGCCACCCTTCCTGCA
TGCCGTGAACAACAGAGCTCCTTGCAAACCACCACACAAAGTTCCAACCG
GTGGTTGGAGAGTATTTGAAATAGAGGCCAAACCCAAGCCCGACAACGGA
CCTCACCAACTCCGTCTCACAGCGAATGGACTTGGTCGTCGACACCAGGG
TTACATGGCAGCCAACAGGCAAGCTGATGAGTGCAATTACGGCGGAACAG
ATTCCTACTCAAGCGGGATTATGAAACCCACAACATGCTCGAACAACAGA
TGTAGAGGCATCAGCCTTGCCGGCAGGAGCAAGACTTGCCCAGCATCGGC
TATACTGCACCACCACCTCCACCTCCAGCAGTAGAGGATGGAGGAGGTGA
AGACAGGGCGGGATATCAAGGGTTACGAGTAGAGAAGGAAGACGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAAAGAAAAAGAAACAAACTCCAATC
AGCAGTTCGTAGTTTTTCATCAAGGTTTCGGACGTCTCACACGGGCCGCT
GGAGATGGGCAGGGGCAACAAGCAAGGGCAACGAGACGCTGCTTCCCTGC
CGCCGCCTCCGTCACGATGT
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13723:889..1908+

>mRNA_H-canaliculatus_F_contig13723.2981.1 ID=mRNA_H-canaliculatus_F_contig13723.2981.1|Name=mRNA_H-canaliculatus_F_contig13723.2981.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1224bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13723:889..1908+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCGAGCAACCGAGGTCGCCCCTTCGCAGTATCACCCCGAGAGGCTCAA
GCTCGGTGTGGACATGCCGACGAGCACAACATGCCAGCTCTCTTCTCCCC
TTTCCGCCGCGGGTCGTGCAAAGCTCTCGCGCTACGACAGAGCCGACTCC
TGGCTTTGGTTCGGGGTACTTGGAGTGCTTGGCCATGCCCCCGCCAGCGT
GCAAGGGCCCAATGAATGCGGAAGAAGGGAAACACATAGGGCTTATATAG
ACGCGCGTTGCTCGCCACCCTTCCTGCATGCCGTGAACAACAGAGCTCCT
TGCAAACCACCACACAAAGTTCCAACCGGTGGTTGGAGAGTATTTGAAAT
AGAGGCCAAACCCAAGCCCGACAACGGACCTCACCAACTCCGTCTCACAG
CGAATGGACTTGGTCGTCGACACCAGGGTTACATGGCAGCCAACAGGCAA
GCTGATGAGTGCAATTACGGCGGAACAGATTCCTACTCAAGCGGGATTAT
GAAACCCACAACATGCTCGAACAACAGATGTAGAGGCATCAGCCTTGCCG
GCAGGAGCAAGACTTGCCCAGCATCGGCTATACTGCACCACCACCTCCAC
CTCCAGCAGTAGATGCGAGCAACCGAGGTCGCCCCTTCGCAGTATCACCC
CGAGAGGCTCAAGCTCGGTGTGGACATGCCGACGAGCACAACATGCCAGC
TCTCTTCTCCCCTTTCCGCCGCGGGTCGTGCAAAGCTCTCGCGCTACGAC
AGAGCCGACTCCTGGCTTTGGTTCGGGGTACTTGGAGTGCTTGGCCATGC
CCCCGCCAGCGTGCAAGGGCCCAATGAATGCGGAAGAAGGGAAACACATA
GGGCTTATATAGACGCGCGTTGCTCGCCACCCTTCCTGCATGCCGTGAAC
AACAGAGCTCCTTGCAAACCACCACACAAAGTTCCAACCGGTGGTTGGAG
AGTATTTGAAATAGAGGCCAAACCCAAGCCCGACAACGGACCTCACCAAC
TCCGTCTCACAGCGAATGGACTTGGTCGTCGACACCAGGGTTACATGGCA
GCCAACAGGCAAGCTGATGAGTGCAATTACGGCGGAACAGATTCCTACTC
AAGCGGGATTATGAAACCCACAACATGCTCGAACAACAGATGTAGAGGCA
TCAGCCTTGCCGGCAGGAGCAAGACTTGCCCAGCATCGGCTATACTGCAC
CACCACCTCCACCTCCAGCAGTAG
back to top