mRNA_H-canaliculatus_F_contig13512.2850.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13512.2850.1
Unique NamemRNA_H-canaliculatus_F_contig13512.2850.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13512.2850.1 vs. uniprot
Match: D7FS94_ECTSI (RRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS94_ECTSI)

HSP 1 Score: 276 bits (707), Expect = 9.700e-88
Identity = 157/236 (66.53%), Postives = 171/236 (72.46%), Query Frame = 1 
Query:    1 VGGLARGVDPKELAALIARTLPPG-ASPTAEIMRDATTGIERGFGYVTVPPGEGVKAGAERAIAAYNGSRWRGNKIRVGLAKGDYLQRLKAEWDAAAKAKAKAAEEALVAAGAKK---------PAVPYKARPCLRVRRRPGESRVILVDPTPIAWAKPPRQDPRAWKKNKEKEAXXXXXXXXXXXXXXXXXGKDSESGPHRRKRGVLGCRRRVEFPGREATCTTKCRELWRRHLQ 678
            VGGLARGVDP ELAALIARTLP G ASPTAEIMRDA+TGIERGFGYV++P GEGVKAGAERAIAAY+G+RW+G KIRVG AKGDYLQRLKAEWDAAA                           PAV YKARP LR+RRRPGE RV+LVDPTPIAWAKP R+DPR W K +E+                    +  + G HRRKRGVLG RRRVEFPGREATC+TKCRELWRRHLQ
Sbjct:   15 VGGLARGVDPNELAALIARTLPSGTASPTAEIMRDASTGIERGFGYVSIPGGEGVKAGAERAIAAYDGARWKGGKIRVGFAKGDYLQRLKAEWDAAAXXXXXXXXXXXXXXXXXXXXPSKTPVPPAVAYKARPFLRLRRRPGE-RVVLVDPTPIAWAKPSRKDPRTWNKREEEGGE-----------------EGGDGGTHRRKRGVLGARRRVEFPGREATCSTKCRELWRRHLQ 232
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BLAST of mRNA_H-canaliculatus_F_contig13512.2850.1 vs. uniprot
Match: A0A6H5KVR0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVR0_9PHAE)

HSP 1 Score: 222 bits (565), Expect = 2.040e-70
Identity = 140/200 (70.00%), Postives = 151/200 (75.50%), Query Frame = 1 
Query:   94 MRDATTGIERGFGYVTVPPGEGVKAGAERAIAAYNGSRWRGNKIRVGLAKGDYLQRLKAEWDAAAKAKAKAAEEALVAAG--AKKP---AVPYKARPCLRVRRRPGESRVILVDPTPIAWAKPPRQDPRAWKKNKEKEAXXXXXXXXXXXXXXXXXGKDSESGPHRRKRGVLGCRRRVEFPGREATCTTKCRELWRRHLQ 678
            MRDA+TGIERGFGYV++P GEGVKAGAERAIAAYNG+RW+G KIRVG AKGDYLQRLKAEWDAAAK            AG  +K P   AV YKARP LR+RRRPGE RV+LVDPTPIAWAKP R+DPRAW K +    XXXXXXXXXXXX                 RGVLG RRRVEFPGREATC+TKCRELWRRHLQ
Sbjct:    1 MRDASTGIERGFGYVSIPGGEGVKAGAERAIAAYNGARWKGGKIRVGFAKGDYLQRLKAEWDAAAKKXXXXXXXXXXXAGGPSKTPVPAAVAYKARPFLRLRRRPGE-RVVLVDPTPIAWAKPSRKDPRAWNKKEXXXXXXXXXXXXXXXX-----------------RGVLGGRRRVEFPGREATCSTKCRELWRRHLQ 182
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BLAST of mRNA_H-canaliculatus_F_contig13512.2850.1 vs. uniprot
Match: A0A1Y1HXN5_KLENI (Protein with RRM/RBD/RNP motifs n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HXN5_KLENI)

HSP 1 Score: 61.6 bits (148), Expect = 2.240e-7
Identity = 40/93 (43.01%), Postives = 53/93 (56.99%), Query Frame = 1 
Query:    1 VGGLARGVDPKELAALIARTLPPGASPTAEIM-RDATTGIERGFGYVTVPPGEGVKAGAERAIAAYNGSRWRGNKIRVGLAKGDYLQRLKAEW 276
            VGGL   V P+EL A   R  P G    +EI+ +    G  RGFGYV + P    +A   +  A YNG++WRG ++RV  A+  +L RLKAEW
Sbjct:   35 VGGLPADVTPEELQA---RFQPFGKVVGSEIVPQKEDAGTCRGFGYVDLEPVS--EASLSKCFAVYNGTKWRGGRLRVEKARASFLDRLKAEW 122
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13512.2850.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FS94_ECTSI9.700e-8866.53RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KVR0_9PHAE2.040e-7070.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1Y1HXN5_KLENI2.240e-743.01Protein with RRM/RBD/RNP motifs n=1 Tax=Klebsormid... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13512contigH-canaliculatus_F_contig13512:1006..3072 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size678
Cds size678
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13512.2850.1prot_H-canaliculatus_F_contig13512.2850.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13512 1006..3072 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929095.7045574-CDS-H-canaliculatus_F_contig13512:1005..12811622929095.7045574-CDS-H-canaliculatus_F_contig13512:1005..1281Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13512 1006..1281 -
1696845676.9957793-CDS-H-canaliculatus_F_contig13512:1005..12811696845676.9957793-CDS-H-canaliculatus_F_contig13512:1005..1281Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13512 1006..1281 -
1622929095.721008-CDS-H-canaliculatus_F_contig13512:2095..22911622929095.721008-CDS-H-canaliculatus_F_contig13512:2095..2291Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13512 2096..2291 -
1696845677.0057883-CDS-H-canaliculatus_F_contig13512:2095..22911696845677.0057883-CDS-H-canaliculatus_F_contig13512:2095..2291Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13512 2096..2291 -
1622929095.7423856-CDS-H-canaliculatus_F_contig13512:2866..30721622929095.7423856-CDS-H-canaliculatus_F_contig13512:2866..3072Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13512 2867..3072 -
1696845677.0162547-CDS-H-canaliculatus_F_contig13512:2866..30721696845677.0162547-CDS-H-canaliculatus_F_contig13512:2866..3072Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13512 2867..3072 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13512.2850.1

>prot_H-canaliculatus_F_contig13512.2850.1 ID=prot_H-canaliculatus_F_contig13512.2850.1|Name=mRNA_H-canaliculatus_F_contig13512.2850.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=226bp
VGGLARGVDPKELAALIARTLPPGASPTAEIMRDATTGIERGFGYVTVPP
GEGVKAGAERAIAAYNGSRWRGNKIRVGLAKGDYLQRLKAEWDAAAKAKA
KAAEEALVAAGAKKPAVPYKARPCLRVRRRPGESRVILVDPTPIAWAKPP
RQDPRAWKKNKEKEAEERRRGEEEAAKEEWGGGKDSESGPHRRKRGVLGC
RRRVEFPGREATCTTKCRELWRRHLQ
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mRNA from alignment at H-canaliculatus_F_contig13512:1006..3072-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13512.2850.1 ID=mRNA_H-canaliculatus_F_contig13512.2850.1|Name=mRNA_H-canaliculatus_F_contig13512.2850.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2067bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13512:1006..3072- (Hapterophycus canaliculatus Oshoro5f female)
GTGGGCGGTCTGGCGCGCGGGGTCGACCCCAAGGAGCTAGCGGCTCTCAT
CGCTCGCACCCTTCCGCCAGGAGCCTCGCCGACGGCCGAGATCATGCGCG
ACGCGACCACCGGCATCGAGCGCGGGTTCGGCTACGTCACCGTGCCCCCC
GGGGAAGGAGTCAAGGCCGGGGCGGAGCGGGCGATAGCAGCATACAACGG
CAGCAGGTAAACTTCTTCCTGCAAATCTGAGCGTTTCCATCATCGTGCCT
GTGGGGCTACGCGAGGCAAGCGTGCGAGCGCTCGTCTCCTCTCGAAAGTT
TCTCGCTCGGGCTTGTCTTGTTCGGTGGGTGGACGTGGCGCGAGTGCGAA
AGCCCTGGGACGGTGATGCTGCTGCAGGCCGAGGATGTATCACCCCCCTG
CACAGCCGCACGATGCGCTCTCGCTAGCCAGGGCGGACCTACAGCAGTAC
CGCACGGGCAGCAGCAAAAGCCGAGGGAAGGCGTCGGCGCTGTTGCTGTA
ACGGCGGGGGCCACATGTTTTTCGGCCACACAGAGCCGTCCTCTTACCCC
GGCCGATCACGTCCCTAAGTGGCCGCGGGCCGGTCGTGTTCCCGCTGTAG
TTGCAAGCCTTCACCAGCTGGGTACTGTGCGAGGTGATTCCTTGGCTGCT
CATGACGTGCGAAAACCTCCTCCTCGCCCCTGGCACCGCAATCCCCGCCC
CCCGCCCCCCCCTAAAAGCTCCGAGTCATCGTCGTCGTCGCCGTCCTCGT
TGCTGTTGTTGCTGCTTCTGCCCCTCCGCAGGTGGAGGGGCAACAAGATA
AGGGTGGGTCTTGCCAAGGGGGACTACCTGCAGCGGCTCAAGGCTGAGTG
GGACGCCGCTGCCAAGGCCAAGGCGAAAGCGGCGGAGGAGGCGCTCGTGG
CGGCGGGAGCAAAGAAGCCCGCCGTGCCCTACAAGGCGCGACCGTGTCTC
AGGGTTCGGCGAAGGCCTGGTGAGAGCGTTCTGCCAGTCGCTGATCGAAT
CCGGGCCGCACGCAGGGCTTTGTGCACAGGGGGTGCTCCGTGGGAAACGC
TGGGGCGGCTGCTACCTCTTGAAGTGCGTTGGTTGGCTTTGTCGAGGAGG
CGTGGAAGCAGACGGTTCGAACATTCTCCCCACTCTTTTTTCCGCGTGTT
GCGGTGTGCTTCCAAAGCGCTATGGCACATCACATCGGGTGGGGAGGGGG
GGTTGGGGGGGGTTCCGCGGTTTGGGGGGAGGGGGTATCGTGGTGTGGTG
CTGTCGTTTTCGTCGTTGGGGTTGTCGTTTTTGTCCTTCTTGTCTCATGT
TTGCTATTGTTGTTGTCCTTGTGGTTGAGACCTCAACGGGGGTCCGGTTT
GGCTTCGACTAGTAGCAGCCTTCCGCCGGACAAGCTCCAAGAGAGCAAAA
CATGCAGGGCAAGAGAGACCCAACGCGCCACATCGGGTGCACGAGACGAC
CACGAAGCGCCTACACACCACACCACACCACACCGGAGAACGCAACAGCA
CCGAGGCGTAGATCTAGCCTAGCGCAAAGCACGAAAAGTGCTTTTAGCCC
CTCGCACCCAAAGGCAAGGCAAAATAAGTTCAGGGGCTTTAAGCAGACGT
CTGCGAAGATTCGAACGGAACGGACCGACACGTAGCCCCCCCCCCCCCCC
CCCCCAACCAAACGACCGCTCTCGCCTGCGTGCCGCTGAATCTTTCCACC
AACCCCTTCCCTCCTCCCTCCCCTCGCCTTACCGCCGACCGCGCGTGATG
CCCCGTCTCTTCTGGTGCAAAAATCGACCAACGAAGGGGAGCGCGTGATC
CTTGTGGACCCCACCCCCATCGCATGGGCGAAACCCCCCCGGCAAGACCC
GAGGGCCTGGAAGAAGAACAAGGAGAAAGAGGCCGAGGAGAGACGGCGGG
GGGAGGAGGAGGCGGCGAAGGAGGAGTGGGGCGGGGGCAAGGATAGCGAG
AGCGGGCCGCACCGGCGCAAGAGGGGGGTGCTCGGCTGTAGGCGGAGGGT
GGAGTTCCCAGGGAGAGAGGCCACCTGCACCACCAAGTGTCGGGAGCTGT
GGCGAAGGCACCTGCAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13512:1006..3072-

>mRNA_H-canaliculatus_F_contig13512.2850.1 ID=mRNA_H-canaliculatus_F_contig13512.2850.1|Name=mRNA_H-canaliculatus_F_contig13512.2850.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1356bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13512:1006..3072- (Hapterophycus canaliculatus Oshoro5f female)
GTGGGCGGTCTGGCGCGCGGGGTCGACCCCAAGGAGCTAGCGGCTCTCAT
CGCTCGCACCCTTCCGCCAGGAGCCTCGCCGACGGCCGAGATCATGCGCG
ACGCGACCACCGGCATCGAGCGCGGGTTCGGCTACGTCACCGTGCCCCCC
GGGGAAGGAGTCAAGGCCGGGGCGGAGCGGGCGATAGCAGCATACAACGG
CAGCAGGTGGGCGGTCTGGCGCGCGGGGTCGACCCCAAGGAGCTAGCGGC
TCTCATCGCTCGCACCCTTCCGCCAGGAGCCTCGCCGACGGCCGAGATCA
TGCGCGACGCGACCACCGGCATCGAGCGCGGGTTCGGCTACGTCACCGTG
CCCCCCGGGGAAGGAGTCAAGGCCGGGGCGGAGCGGGCGATAGCAGCATA
CAACGGCAGCAGGTGGAGGGGCAACAAGATAAGGGTGGGTCTTGCCAAGG
GGGACTACCTGCAGCGGCTCAAGGCTGAGTGGGACGCCGCTGCCAAGGCC
AAGGCGAAAGCGGCGGAGGAGGCGCTCGTGGCGGCGGGAGCAAAGAAGCC
CGCCGTGCCCTACAAGGCGCGACCGTGTCTCAGGGTTCGGCGAAGGCCTG
GTGAGAGCGTGGAGGGGCAACAAGATAAGGGTGGGTCTTGCCAAGGGGGA
CTACCTGCAGCGGCTCAAGGCTGAGTGGGACGCCGCTGCCAAGGCCAAGG
CGAAAGCGGCGGAGGAGGCGCTCGTGGCGGCGGGAGCAAAGAAGCCCGCC
GTGCCCTACAAGGCGCGACCGTGTCTCAGGGTTCGGCGAAGGCCTGGTGA
GAGCCGCGTGATCCTTGTGGACCCCACCCCCATCGCATGGGCGAAACCCC
CCCGGCAAGACCCGAGGGCCTGGAAGAAGAACAAGGAGAAAGAGGCCGAG
GAGAGACGGCGGGGGGAGGAGGAGGCGGCGAAGGAGGAGTGGGGCGGGGG
CAAGGATAGCGAGAGCGGGCCGCACCGGCGCAAGAGGGGGGTGCTCGGCT
GTAGGCGGAGGGTGGAGTTCCCAGGGAGAGAGGCCACCTGCACCACCAAG
TGTCGGGAGCTGTGGCGAAGGCACCTGCAGCGCGTGATCCTTGTGGACCC
CACCCCCATCGCATGGGCGAAACCCCCCCGGCAAGACCCGAGGGCCTGGA
AGAAGAACAAGGAGAAAGAGGCCGAGGAGAGACGGCGGGGGGAGGAGGAG
GCGGCGAAGGAGGAGTGGGGCGGGGGCAAGGATAGCGAGAGCGGGCCGCA
CCGGCGCAAGAGGGGGGTGCTCGGCTGTAGGCGGAGGGTGGAGTTCCCAG
GGAGAGAGGCCACCTGCACCACCAAGTGTCGGGAGCTGTGGCGAAGGCAC
CTGCAG
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