mRNA_H-canaliculatus_F_contig13501.2841.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13501.2841.1
Unique NamemRNA_H-canaliculatus_F_contig13501.2841.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13501.2841.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13501contigH-canaliculatus_F_contig13501:1178..2044 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size601
Cds size309
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13501.2841.1prot_H-canaliculatus_F_contig13501.2841.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13501 1612..1920 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929091.9709966-UTR-H-canaliculatus_F_contig13501:1177..12641622929091.9709966-UTR-H-canaliculatus_F_contig13501:1177..1264Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13501 1178..1264 +
1696845676.521169-UTR-H-canaliculatus_F_contig13501:1177..12641696845676.521169-UTR-H-canaliculatus_F_contig13501:1177..1264Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13501 1178..1264 +
1622929091.9929643-UTR-H-canaliculatus_F_contig13501:1530..16111622929091.9929643-UTR-H-canaliculatus_F_contig13501:1530..1611Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13501 1531..1611 +
1696845676.5342839-UTR-H-canaliculatus_F_contig13501:1530..16111696845676.5342839-UTR-H-canaliculatus_F_contig13501:1530..1611Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13501 1531..1611 +
1622929092.0467625-UTR-H-canaliculatus_F_contig13501:1920..20441622929092.0467625-UTR-H-canaliculatus_F_contig13501:1920..2044Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13501 1921..2044 +
1696845676.5550492-UTR-H-canaliculatus_F_contig13501:1920..20441696845676.5550492-UTR-H-canaliculatus_F_contig13501:1920..2044Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13501 1921..2044 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929092.0217817-CDS-H-canaliculatus_F_contig13501:1611..19201622929092.0217817-CDS-H-canaliculatus_F_contig13501:1611..1920Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13501 1612..1920 +
1696845676.546346-CDS-H-canaliculatus_F_contig13501:1611..19201696845676.546346-CDS-H-canaliculatus_F_contig13501:1611..1920Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13501 1612..1920 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13501.2841.1

>prot_H-canaliculatus_F_contig13501.2841.1 ID=prot_H-canaliculatus_F_contig13501.2841.1|Name=mRNA_H-canaliculatus_F_contig13501.2841.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=103bp
MFRVRLLAARTTRSEQSLGSRGTTLRAPLPRNKLGRSVKLCDEAFAAYQK
KYENTWVSCFCSQNMSLYTAQCDSDKNILFIFCWCISDEDLIGAILLQMI
EL*
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mRNA from alignment at H-canaliculatus_F_contig13501:1178..2044+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13501.2841.1 ID=mRNA_H-canaliculatus_F_contig13501.2841.1|Name=mRNA_H-canaliculatus_F_contig13501.2841.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=867bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13501:1178..2044+ (Hapterophycus canaliculatus Oshoro5f female)
CGTTGAATAGTGCAGCTTCACGGGCTGGACTGTAGCAGAAGGCGGCACGG
CCCCGGCAGGGTCAACTACAATCTCCGCAGATCCTCGGTGAGAGAACTGC
CGGTAAAGTGTTAATAAAAAGCCGATCGACACGAATGTCAGCGCTAGGTT
GGTTCCTTCGGGAGAGGAGGCAGGTTACTAAAGCACTACGATGTACGTTC
TACTGGACATATGATCCCTTGTTCTGGGCGCTACTATCGCTGCTTCGTTT
CTGCCGTCAAGTCTTGCTCGGCTTCGCTTTGACAGTGCTTTTCAGCGGAA
CACTTGAAAACAAATGCTCATTTCGCGAACCTACCTTTGAATTTGAACCA
AAGGCATGCTCCACGCTGACGCTGCGCGCACTACCATAAGCGAACCACGT
GAGAAGAGCGACTGCGGTAATCATACAGGTCTTCATGTTCAGGGTGAGGC
TCCTGGCGGCACGCACGACACGATCGGAACAGAGTCTGGGTTCCAGAGGT
ACCACTCTTCGGGCTCCCCTACCTAGAAACAAATTGGGGCGAAGCGTGAA
ATTATGTGACGAGGCGTTTGCCGCGTACCAGAAGAAATACGAAAATACCT
GGGTTTCTTGCTTTTGCAGTCAAAACATGTCGCTCTACACGGCGCAATGT
GATAGTGACAAGAACATCTTGTTCATCTTTTGTTGGTGTATTTCGGATGA
AGACCTGATTGGCGCTATTTTGTTGCAGATGATCGAGCTGTGAATATCTC
GGGCCGGAGTAGAAAACACACGTGAAGAGAACGAGCACGTGCCTTTCTTG
CTCTTGTCTAAAATCATGGACCCGATAGATTCCACTATGTTCCTTTTTTT
GCCATGTTCGATTTCCA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13501:1178..2044+

>mRNA_H-canaliculatus_F_contig13501.2841.1 ID=mRNA_H-canaliculatus_F_contig13501.2841.1|Name=mRNA_H-canaliculatus_F_contig13501.2841.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=618bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13501:1178..2044+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTTCAGGGTGAGGCTCCTGGCGGCACGCACGACACGATCGGAACAGAG
TCTGGGTTCCAGAGGTACCACTCTTCGGGCTCCCCTACCTAGAAACAAAT
TGGGGCGAAGCGTGAAATTATGTGACGAGGCGTTTGCCGCGTACCAGAAG
AAATACGAAAATACCTGGGTTTCTTGCTTTTGCAGTCAAAACATGTCGCT
CTACACGGCGCAATGTGATAGTGACAAGAACATCTTGTTCATCTTTTGTT
GGTGTATTTCGGATGAAGACCTGATTGGCGCTATTTTGTTGCAGATGATC
GAGCTGTGAATGTTCAGGGTGAGGCTCCTGGCGGCACGCACGACACGATC
GGAACAGAGTCTGGGTTCCAGAGGTACCACTCTTCGGGCTCCCCTACCTA
GAAACAAATTGGGGCGAAGCGTGAAATTATGTGACGAGGCGTTTGCCGCG
TACCAGAAGAAATACGAAAATACCTGGGTTTCTTGCTTTTGCAGTCAAAA
CATGTCGCTCTACACGGCGCAATGTGATAGTGACAAGAACATCTTGTTCA
TCTTTTGTTGGTGTATTTCGGATGAAGACCTGATTGGCGCTATTTTGTTG
CAGATGATCGAGCTGTGA
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