mRNA_H-canaliculatus_F_contig13499.2831.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13499.2831.1
Unique NamemRNA_H-canaliculatus_F_contig13499.2831.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13499.2831.1 vs. uniprot
Match: A0A6H5KD62_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD62_9PHAE)

HSP 1 Score: 160 bits (404), Expect = 1.630e-44
Identity = 72/74 (97.30%), Postives = 74/74 (100.00%), Query Frame = 1 
Query:    4 IQSWEAHTDYIRYLEVHPTLPYVLSASDDMSVKLWDWERQWDCTQVFEGHSHYVMMVKFNLKDSNTFASASLDR 225
            IQ+WEAHTDYIRYLEVHPTLPYVLSASDDMSVKLWDWERQWDCTQVFEGH+HYVMMVKFNLKDSNTFASASLDR
Sbjct:  125 IQAWEAHTDYIRYLEVHPTLPYVLSASDDMSVKLWDWERQWDCTQVFEGHAHYVMMVKFNLKDSNTFASASLDR 198
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BLAST of mRNA_H-canaliculatus_F_contig13499.2831.1 vs. uniprot
Match: A0A7S3ZMX6_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZMX6_9STRA)

HSP 1 Score: 131 bits (329), Expect = 1.610e-37
Identity = 54/75 (72.00%), Postives = 67/75 (89.33%), Query Frame = 1 
Query:    1 QIQSWEAHTDYIRYLEVHPTLPYVLSASDDMSVKLWDWERQWDCTQVFEGHSHYVMMVKFNLKDSNTFASASLDR 225
            +++  EAH DYIR++E+HPTLPY+LS+SDDMS+KLW+WE+ WDCT  FEGH+HYVMM KFN KD+NTFASASLDR
Sbjct:   23 KVKDMEAHADYIRFVEIHPTLPYILSSSDDMSIKLWNWEQNWDCTSSFEGHAHYVMMCKFNPKDTNTFASASLDR 97
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BLAST of mRNA_H-canaliculatus_F_contig13499.2831.1 vs. uniprot
Match: A0A7S1D8T3_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D8T3_CYCTE)

HSP 1 Score: 129 bits (325), Expect = 4.440e-37
Identity = 55/75 (73.33%), Postives = 69/75 (92.00%), Query Frame = 1 
Query:    1 QIQSWEAHTDYIRYLEVHPTLPYVLSASDDMSVKLWDWERQWDCTQVFEGHSHYVMMVKFNLKDSNTFASASLDR 225
            +++ +EAH DYIR LE+HP+LPYVLS+SDDM++KLWDW+R +DCTQ+FEGH+HYVM VKFN KD+NTFASASLDR
Sbjct:   52 KVKEFEAHADYIRSLEIHPSLPYVLSSSDDMTIKLWDWDRGFDCTQLFEGHAHYVMQVKFNPKDTNTFASASLDR 126
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BLAST of mRNA_H-canaliculatus_F_contig13499.2831.1 vs. uniprot
Match: A0A392PJT1_9FABA (Coatomer subunit beta'-2-like (Fragment) n=2 Tax=Pentapetalae TaxID=1437201 RepID=A0A392PJT1_9FABA)

HSP 1 Score: 128 bits (321), Expect = 7.340e-37
Identity = 56/75 (74.67%), Postives = 66/75 (88.00%), Query Frame = 1 
Query:    1 QIQSWEAHTDYIRYLEVHPTLPYVLSASDDMSVKLWDWERQWDCTQVFEGHSHYVMMVKFNLKDSNTFASASLDR 225
            +++ +EAHTDYIR + VHPTLPYVLS+SDDM +KLWDWE+ W CTQ+FEGHSHYVM V FN KD+NTFASASLDR
Sbjct:   31 KVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWICTQIFEGHSHYVMQVTFNPKDTNTFASASLDR 105
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BLAST of mRNA_H-canaliculatus_F_contig13499.2831.1 vs. uniprot
Match: A0A835YRX4_9STRA (Coatomer WD associated region-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRX4_9STRA)

HSP 1 Score: 137 bits (345), Expect = 5.680e-36
Identity = 58/75 (77.33%), Postives = 67/75 (89.33%), Query Frame = 1 
Query:    1 QIQSWEAHTDYIRYLEVHPTLPYVLSASDDMSVKLWDWERQWDCTQVFEGHSHYVMMVKFNLKDSNTFASASLDR 225
            ++ +WEAHTDYIR++EVHP LPYVLS SDDMS+KLWDWER WDC QVFEGH HYVMM+K N +D+NTFASASLDR
Sbjct:   91 KVNAWEAHTDYIRFVEVHPNLPYVLSCSDDMSIKLWDWERGWDCCQVFEGHVHYVMMIKVNPRDTNTFASASLDR 165
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BLAST of mRNA_H-canaliculatus_F_contig13499.2831.1 vs. uniprot
Match: A0A7S2XXQ5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XXQ5_9STRA)

HSP 1 Score: 137 bits (344), Expect = 7.750e-36
Identity = 56/75 (74.67%), Postives = 70/75 (93.33%), Query Frame = 1 
Query:    1 QIQSWEAHTDYIRYLEVHPTLPYVLSASDDMSVKLWDWERQWDCTQVFEGHSHYVMMVKFNLKDSNTFASASLDR 225
            ++ +WEAHTDYIR+LEVHP+LP +LS+SDDM+++LWDWE+ WDC QVFEGH+HYVMMV+FN KD+NTFASASLDR
Sbjct:   91 KVHAWEAHTDYIRFLEVHPSLPNILSSSDDMTIRLWDWEKNWDCIQVFEGHAHYVMMVRFNPKDTNTFASASLDR 165
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BLAST of mRNA_H-canaliculatus_F_contig13499.2831.1 vs. uniprot
Match: UPI000B8CB730 (coatomer subunit beta'-2 n=1 Tax=Carica papaya TaxID=3649 RepID=UPI000B8CB730)

HSP 1 Score: 128 bits (322), Expect = 1.950e-35
Identity = 57/75 (76.00%), Postives = 66/75 (88.00%), Query Frame = 1 
Query:    1 QIQSWEAHTDYIRYLEVHPTLPYVLSASDDMSVKLWDWERQWDCTQVFEGHSHYVMMVKFNLKDSNTFASASLDR 225
            +I+ +EAHTDYIR + VHPTLPYVLS+SDDM +KLWDWE+ W CTQ+FEGHSHYVM V FN KD+NTFASASLDR
Sbjct:   43 KIKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDR 117
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BLAST of mRNA_H-canaliculatus_F_contig13499.2831.1 vs. uniprot
Match: A0A2N9GN71_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GN71_FAGSY)

HSP 1 Score: 127 bits (319), Expect = 3.280e-35
Identity = 57/73 (78.08%), Postives = 63/73 (86.30%), Query Frame = 1 
Query:    7 QSWEAHTDYIRYLEVHPTLPYVLSASDDMSVKLWDWERQWDCTQVFEGHSHYVMMVKFNLKDSNTFASASLDR 225
            Q  EAHTDYIR + VHPTLPYVLS+SDDM +KLWDWE+ W CTQ+FEGHSHYVM V FN KD+NTFASASLDR
Sbjct:   59 QKVEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDR 131
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13499.2831.1 vs. uniprot
Match: A0A7S1Y0J4_9STRA (Hypothetical protein (Fragment) n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1Y0J4_9STRA)

HSP 1 Score: 134 bits (336), Expect = 9.260e-35
Identity = 56/76 (73.68%), Postives = 69/76 (90.79%), Query Frame = 1 
Query:    1 QIQSWE-AHTDYIRYLEVHPTLPYVLSASDDMSVKLWDWERQWDCTQVFEGHSHYVMMVKFNLKDSNTFASASLDR 225
            ++++WE AH DYIRY+EVHPTLPYVL++SDD+++KLWDWE+ WDCT VFEGH HYVMM+K N KD+NTFASASLDR
Sbjct:   91 KVKAWERAHDDYIRYIEVHPTLPYVLTSSDDLTIKLWDWEKNWDCTNVFEGHGHYVMMIKINPKDTNTFASASLDR 166
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13499.2831.1 vs. uniprot
Match: UPI001036F02F (coatomer subunit beta'-1-like n=1 Tax=Camellia sinensis TaxID=4442 RepID=UPI001036F02F)

HSP 1 Score: 125 bits (314), Expect = 1.190e-34
Identity = 54/75 (72.00%), Postives = 64/75 (85.33%), Query Frame = 1 
Query:    1 QIQSWEAHTDYIRYLEVHPTLPYVLSASDDMSVKLWDWERQWDCTQVFEGHSHYVMMVKFNLKDSNTFASASLDR 225
            +++ +EAHTDYIR + VHPTLPYVLS+SDDM +K WDWE+ W CTQ+FEGHSHYVM V FN KD+NTF SASLDR
Sbjct:   35 KVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKFWDWEKGWVCTQIFEGHSHYVMQVTFNSKDTNTFVSASLDR 109
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13499.2831.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KD62_9PHAE1.630e-4497.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3ZMX6_9STRA1.610e-3772.00Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S1D8T3_CYCTE4.440e-3773.33Hypothetical protein (Fragment) n=1 Tax=Cyclophora... [more]
A0A392PJT1_9FABA7.340e-3774.67Coatomer subunit beta'-2-like (Fragment) n=2 Tax=P... [more]
A0A835YRX4_9STRA5.680e-3677.33Coatomer WD associated region-domain-containing pr... [more]
A0A7S2XXQ5_9STRA7.750e-3674.67Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
UPI000B8CB7301.950e-3576.00coatomer subunit beta'-2 n=1 Tax=Carica papaya Tax... [more]
A0A2N9GN71_FAGSY3.280e-3578.08Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A7S1Y0J4_9STRA9.260e-3573.68Hypothetical protein (Fragment) n=2 Tax=Phaeomonas... [more]
UPI001036F02F1.190e-3472.00coatomer subunit beta'-1-like n=1 Tax=Camellia sin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13499contigH-canaliculatus_F_contig13499:1018..2031 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score132.9
Seed ortholog evalue6.3e-29
Seed eggNOG ortholog44056.XP_009041059.1
KEGG koko:K17302
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005798,GO:0006810,GO:0006886,GO:0006888,GO:0006890,GO:0006891,GO:0008104,GO:0008150,GO:0012505,GO:0012506,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0030117,GO:0030120,GO:0030126,GO:0030135,GO:0030137,GO:0030659,GO:0030660,GO:0030662,GO:0030663,GO:0031090,GO:0031410,GO:0031982,GO:0032991,GO:0033036,GO:0034613,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048193,GO:0048475,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0097708,GO:0098588,GO:0098796,GO:0098805
EggNOG free text desc.The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins
EggNOG OGsKOG0276@1,KOG0276@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Exons2
Model size225
Cds size225
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929089.9310453-CDS-H-canaliculatus_F_contig13499:1017..11041622929089.9310453-CDS-H-canaliculatus_F_contig13499:1017..1104Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13499 1018..1104 -
1696845675.5345411-CDS-H-canaliculatus_F_contig13499:1017..11041696845675.5345411-CDS-H-canaliculatus_F_contig13499:1017..1104Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13499 1018..1104 -
1622929089.9484437-CDS-H-canaliculatus_F_contig13499:1893..20311622929089.9484437-CDS-H-canaliculatus_F_contig13499:1893..2031Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13499 1894..2031 -
1696845675.5477273-CDS-H-canaliculatus_F_contig13499:1893..20311696845675.5477273-CDS-H-canaliculatus_F_contig13499:1893..2031Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13499 1894..2031 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13499.2831.1prot_H-canaliculatus_F_contig13499.2831.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13499 1018..2031 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13499.2831.1

>prot_H-canaliculatus_F_contig13499.2831.1 ID=prot_H-canaliculatus_F_contig13499.2831.1|Name=mRNA_H-canaliculatus_F_contig13499.2831.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=75bp
QIQSWEAHTDYIRYLEVHPTLPYVLSASDDMSVKLWDWERQWDCTQVFEG
HSHYVMMVKFNLKDSNTFASASLDR
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mRNA from alignment at H-canaliculatus_F_contig13499:1018..2031-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13499.2831.1 ID=mRNA_H-canaliculatus_F_contig13499.2831.1|Name=mRNA_H-canaliculatus_F_contig13499.2831.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1014bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13499:1018..2031- (Hapterophycus canaliculatus Oshoro5f female)
CAGATCCAGTCGTGGGAGGCCCACACCGACTACATCCGCTACCTGGAGGT
GCACCCGACGCTGCCGTACGTCCTCTCCGCCTCGGACGACATGAGCGTCA
AGCTGTGGGACTGGGAGAGGCAGTGGGACTGCACACAGGTGAGAGGCGGG
GAGGGCACGGATGGCGGCCGGCCGGCCGGCGGGGGAGCGGGGGGGGGGGA
TCGCGAACCGGAATGGCCCACGGTACCGAAACGGGACGCGGACGGAAAAC
GGGACGGAACCGAACGGGGAGGGAAACGGGACGGAACGGAACGGAACGGG
ACGGAATGGGACGGGTCCGAAGGGAAGGAAGCAGCAAGCACCGCGGGAGG
AGCATGCTTTGTTGAGTTCCATGCGGCGGTACGGTGGCGAGCGAGGCCGA
GGCGGTACGGCCGAGAAAAGCACCCCCCCGTCTCGGGCACAACAGGCGGC
GGTGGTTGCTGATTGGCTTCTGGGGCACTCGCGCCCGACGTTCGAGTGAC
GTCACTGTTCACTCTGCGTCCGCCTGTGTGCCAGGGCGGTCTACTTTCTT
TCTTTTTTTAATGCCGCGTGTACGACCCTGCCGCACGAGTCTTTCGGTGG
TTGCTGGCGTCCGCGAGAGTGGACCGTCCTCTCGGTCGATCGCCTCGTGC
GCACGGACGTCGTGATGCCCCCCTGGTACGTCTTCGAGCGTGGTCCTCCA
GCATCAGCAACAACGACGACAGCGACGGTCTCGGCCGATACTCCGCGCTC
GATTGCGCTGCCTCGCGTTCCTTGCCCAAGCATTCACCGTGTGCATGCCC
CGCCCTTGCACGTGTCGCCACGGCGGTGGTGCCGCCTGTCGAAACCGCAA
ATAAAAAAGAACGATGGTCCCCCCGCGTCTCGTGTCATGGTTCTGTACGG
CGGTGCGCGATGGGTCGTGTCGTCCAGGTGTTCGAGGGCCACTCCCACTA
CGTGATGATGGTCAAGTTCAACCTCAAGGATTCCAACACCTTCGCCAGCG
CTTCTCTGGACAGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13499:1018..2031-

>mRNA_H-canaliculatus_F_contig13499.2831.1 ID=mRNA_H-canaliculatus_F_contig13499.2831.1|Name=mRNA_H-canaliculatus_F_contig13499.2831.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=450bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13499:1018..2031- (Hapterophycus canaliculatus Oshoro5f female)
CAGATCCAGTCGTGGGAGGCCCACACCGACTACATCCGCTACCTGGAGGT
GCACCCGACGCTGCCGTACGTCCTCTCCGCCTCGGACGACATGAGCGTCA
AGCTGTGGGACTGGGAGAGGCAGTGGGACTGCACACAGCAGATCCAGTCG
TGGGAGGCCCACACCGACTACATCCGCTACCTGGAGGTGCACCCGACGCT
GCCGTACGTCCTCTCCGCCTCGGACGACATGAGCGTCAAGCTGTGGGACT
GGGAGAGGCAGTGGGACTGCACACAGGTGTTCGAGGGCCACTCCCACTAC
GTGATGATGGTCAAGTTCAACCTCAAGGATTCCAACACCTTCGCCAGCGC
TTCTCTGGACAGGGTGTTCGAGGGCCACTCCCACTACGTGATGATGGTCA
AGTTCAACCTCAAGGATTCCAACACCTTCGCCAGCGCTTCTCTGGACAGG
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